data_2ZCW # _entry.id 2ZCW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZCW RCSB RCSB027812 WWPDB D_1000027812 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2007-12-04 _pdbx_database_PDB_obs_spr.pdb_id 2ZCW _pdbx_database_PDB_obs_spr.replace_pdb_id 2COH _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001019.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZCW _pdbx_database_status.recvd_initial_deposition_date 2007-11-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Agari, Y.' 1 'Yokoyama, S.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator' _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 70 _citation.page_first 60 _citation.page_last 75 _citation.year 2008 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18699868 _citation.pdbx_database_id_DOI 10.1111/j.1365-2958.2008.06388.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Agari, Y.' 1 primary 'Kashihara, A.' 2 primary 'Yokoyama, S.' 3 primary 'Kuramitsu, S.' 4 primary 'Shinkai, A.' 5 # _cell.entry_id 2ZCW _cell.length_a 54.050 _cell.length_b 54.050 _cell.length_c 147.718 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZCW _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, FNR/CRP family' 22395.344 1 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 3 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name TTHA1359 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQERIYFAEAATDVR LEPLPENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNR(MSE)AAALLELSETPLAHEEEGKVVLKATHDELAAAV GSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRGQGR ; _entity_poly.pdbx_seq_one_letter_code_can ;MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQERIYFAEAATDVR LEPLPENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVR ETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRGQGR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001019.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLN n 1 4 VAL n 1 5 ARG n 1 6 GLU n 1 7 THR n 1 8 VAL n 1 9 SER n 1 10 PHE n 1 11 LYS n 1 12 ALA n 1 13 GLY n 1 14 ASP n 1 15 VAL n 1 16 ILE n 1 17 LEU n 1 18 TYR n 1 19 PRO n 1 20 GLY n 1 21 VAL n 1 22 PRO n 1 23 GLY n 1 24 PRO n 1 25 ARG n 1 26 ASP n 1 27 ARG n 1 28 ALA n 1 29 TYR n 1 30 ARG n 1 31 VAL n 1 32 LEU n 1 33 GLU n 1 34 GLY n 1 35 LEU n 1 36 VAL n 1 37 ARG n 1 38 LEU n 1 39 GLU n 1 40 ALA n 1 41 VAL n 1 42 ASP n 1 43 GLU n 1 44 GLU n 1 45 GLY n 1 46 ASN n 1 47 ALA n 1 48 LEU n 1 49 THR n 1 50 LEU n 1 51 ARG n 1 52 LEU n 1 53 VAL n 1 54 ARG n 1 55 PRO n 1 56 GLY n 1 57 GLY n 1 58 PHE n 1 59 PHE n 1 60 GLY n 1 61 GLU n 1 62 GLU n 1 63 ALA n 1 64 LEU n 1 65 PHE n 1 66 GLY n 1 67 GLN n 1 68 GLU n 1 69 ARG n 1 70 ILE n 1 71 TYR n 1 72 PHE n 1 73 ALA n 1 74 GLU n 1 75 ALA n 1 76 ALA n 1 77 THR n 1 78 ASP n 1 79 VAL n 1 80 ARG n 1 81 LEU n 1 82 GLU n 1 83 PRO n 1 84 LEU n 1 85 PRO n 1 86 GLU n 1 87 ASN n 1 88 PRO n 1 89 ASP n 1 90 PRO n 1 91 GLU n 1 92 LEU n 1 93 LEU n 1 94 LYS n 1 95 ASP n 1 96 LEU n 1 97 ALA n 1 98 GLN n 1 99 HIS n 1 100 LEU n 1 101 SER n 1 102 GLN n 1 103 GLY n 1 104 LEU n 1 105 ALA n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 ARG n 1 110 ARG n 1 111 ILE n 1 112 GLU n 1 113 ARG n 1 114 LEU n 1 115 ALA n 1 116 THR n 1 117 GLN n 1 118 ARG n 1 119 LEU n 1 120 LYS n 1 121 ASN n 1 122 ARG n 1 123 MSE n 1 124 ALA n 1 125 ALA n 1 126 ALA n 1 127 LEU n 1 128 LEU n 1 129 GLU n 1 130 LEU n 1 131 SER n 1 132 GLU n 1 133 THR n 1 134 PRO n 1 135 LEU n 1 136 ALA n 1 137 HIS n 1 138 GLU n 1 139 GLU n 1 140 GLU n 1 141 GLY n 1 142 LYS n 1 143 VAL n 1 144 VAL n 1 145 LEU n 1 146 LYS n 1 147 ALA n 1 148 THR n 1 149 HIS n 1 150 ASP n 1 151 GLU n 1 152 LEU n 1 153 ALA n 1 154 ALA n 1 155 ALA n 1 156 VAL n 1 157 GLY n 1 158 SER n 1 159 VAL n 1 160 ARG n 1 161 GLU n 1 162 THR n 1 163 VAL n 1 164 THR n 1 165 LYS n 1 166 VAL n 1 167 ILE n 1 168 GLY n 1 169 GLU n 1 170 LEU n 1 171 ALA n 1 172 ARG n 1 173 GLU n 1 174 GLY n 1 175 TYR n 1 176 ILE n 1 177 ARG n 1 178 SER n 1 179 GLY n 1 180 TYR n 1 181 GLY n 1 182 LYS n 1 183 ILE n 1 184 GLN n 1 185 LEU n 1 186 LEU n 1 187 ASP n 1 188 LEU n 1 189 LYS n 1 190 GLY n 1 191 LEU n 1 192 LYS n 1 193 GLU n 1 194 LEU n 1 195 ALA n 1 196 GLU n 1 197 SER n 1 198 ARG n 1 199 GLY n 1 200 GLN n 1 201 GLY n 1 202 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SIL0_THET8 _struct_ref.pdbx_db_accession Q5SIL0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQERIYFAEAATDVR LEPLPENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVR ETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELAESRGQGR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZCW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 202 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SIL0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 202 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 201 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZCW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.1 _exptl_crystal_grow.pdbx_details '31% MPD, 0.1M sodium acetate, 20mM calcium chloride, pH5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2004-10-07 _diffrn_detector.details 'A fixed exit Si double crystal monochromator followed by a two dimensional focusing mirror which is coated in rhodium' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9 1.0 2 0.97874 1.0 3 0.97939 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9, 0.97874, 0.97939' # _reflns.entry_id 2ZCW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.45 _reflns.number_obs 39799 _reflns.number_all 39799 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 50.7 _reflns.B_iso_Wilson_estimate 19.6 _reflns.pdbx_redundancy 13.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 96.1 _reflns_shell.Rmerge_I_obs 0.266 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.7 _reflns_shell.pdbx_redundancy 8.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3781 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZCW _refine.ls_number_reflns_obs 36036 _refine.ls_number_reflns_all 39603 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1701323.01 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.40 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 3592 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.4 _refine.aniso_B[1][1] -0.55 _refine.aniso_B[2][2] -0.55 _refine.aniso_B[3][3] 1.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.395389 _refine.solvent_model_param_bsol 50.4771 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZCW _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1506 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 1671 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 36.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.78 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.44 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.20 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.91 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 5255 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.252 _refine_ls_shell.R_factor_R_free_error 0.010 _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 608 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 5863 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 mpd_xplor.param mpd_xplor.top 'X-RAY DIFFRACTION' # _struct.entry_id 2ZCW _struct.title 'Crystal Structure of TTHA1359, a Transcriptional Regulator, CRP/FNR family from Thermus thermophilus HB8' _struct.pdbx_descriptor 'Transcriptional regulator, FNR/CRP family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZCW _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;FNR/CRP family, transcriptional regulator, Thermus thermophilus, stationary phase, DNA-binding, Transcription regulation, Winged helix DNA-binding domain, cAMP-binding domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 60 ? PHE A 65 ? GLY A 59 PHE A 64 5 ? 6 HELX_P HELX_P2 2 ASP A 89 ? GLN A 117 ? ASP A 88 GLN A 116 1 ? 29 HELX_P HELX_P3 3 ARG A 118 ? SER A 131 ? ARG A 117 SER A 130 1 ? 14 HELX_P HELX_P4 4 THR A 148 ? GLY A 157 ? THR A 147 GLY A 156 1 ? 10 HELX_P HELX_P5 5 VAL A 159 ? GLU A 173 ? VAL A 158 GLU A 172 1 ? 15 HELX_P HELX_P6 6 ASP A 187 ? GLU A 196 ? ASP A 186 GLU A 195 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 122 C ? ? ? 1_555 A MSE 123 N ? ? A ARG 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 123 C ? ? ? 1_555 A ALA 124 N ? ? A MSE 122 A ALA 123 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 8 ? PHE A 10 ? VAL A 7 PHE A 9 A 2 VAL A 79 ? PRO A 83 ? VAL A 78 PRO A 82 A 3 TYR A 29 ? GLU A 33 ? TYR A 28 GLU A 32 A 4 PHE A 58 ? PHE A 59 ? PHE A 57 PHE A 58 B 1 VAL A 15 ? LEU A 17 ? VAL A 14 LEU A 16 B 2 PHE A 72 ? ALA A 75 ? PHE A 71 ALA A 74 B 3 VAL A 36 ? VAL A 41 ? VAL A 35 VAL A 40 B 4 ALA A 47 ? VAL A 53 ? ALA A 46 VAL A 52 C 1 ALA A 136 ? GLU A 139 ? ALA A 135 GLU A 138 C 2 LYS A 142 ? LYS A 146 ? LYS A 141 LYS A 145 C 3 LYS A 182 ? LEU A 185 ? LYS A 181 LEU A 184 C 4 ILE A 176 ? GLY A 179 ? ILE A 175 GLY A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 8 ? N VAL A 7 O LEU A 81 ? O LEU A 80 A 2 3 O ARG A 80 ? O ARG A 79 N LEU A 32 ? N LEU A 31 A 3 4 N TYR A 29 ? N TYR A 28 O PHE A 59 ? O PHE A 58 B 1 2 N ILE A 16 ? N ILE A 15 O ALA A 73 ? O ALA A 72 B 2 3 O GLU A 74 ? O GLU A 73 N ARG A 37 ? N ARG A 36 B 3 4 N VAL A 36 ? N VAL A 35 O VAL A 53 ? O VAL A 52 C 1 2 N HIS A 137 ? N HIS A 136 O VAL A 144 ? O VAL A 143 C 2 3 N LEU A 145 ? N LEU A 144 O ILE A 183 ? O ILE A 182 C 3 4 O GLN A 184 ? O GLN A 183 N ARG A 177 ? N ARG A 176 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MPD A 301' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MPD A 302' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MPD A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 109 ? ARG A 108 . ? 1_555 ? 2 AC1 6 GLU A 112 ? GLU A 111 . ? 1_555 ? 3 AC1 6 THR A 116 ? THR A 115 . ? 1_555 ? 4 AC1 6 GLN A 117 ? GLN A 116 . ? 1_555 ? 5 AC1 6 GLU A 196 ? GLU A 195 . ? 1_555 ? 6 AC1 6 SER A 197 ? SER A 196 . ? 1_555 ? 7 AC2 7 GLU A 43 ? GLU A 42 . ? 5_655 ? 8 AC2 7 GLU A 139 ? GLU A 138 . ? 1_555 ? 9 AC2 7 GLU A 140 ? GLU A 139 . ? 1_555 ? 10 AC2 7 GLY A 179 ? GLY A 178 . ? 1_555 ? 11 AC2 7 LYS A 182 ? LYS A 181 . ? 1_555 ? 12 AC2 7 GLN A 184 ? GLN A 183 . ? 1_555 ? 13 AC2 7 HOH E . ? HOH A 404 . ? 1_555 ? 14 AC3 6 VAL A 41 ? VAL A 40 . ? 5_655 ? 15 AC3 6 GLY A 45 ? GLY A 44 . ? 5_655 ? 16 AC3 6 GLU A 74 ? GLU A 73 . ? 5_655 ? 17 AC3 6 THR A 164 ? THR A 163 . ? 1_555 ? 18 AC3 6 ARG A 172 ? ARG A 171 . ? 1_555 ? 19 AC3 6 HOH E . ? HOH A 358 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZCW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZCW _atom_sites.fract_transf_matrix[1][1] 0.018501 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018501 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 THR 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 VAL 4 3 ? ? ? A . n A 1 5 ARG 5 4 ? ? ? A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 PRO 22 21 21 PRO PRO A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 ASP 26 25 25 ASP ASP A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 ARG 51 50 50 ARG ARG A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 HIS 99 98 98 HIS HIS A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 GLN 102 101 101 GLN GLN A . n A 1 103 GLY 103 102 102 GLY GLY A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 TYR 108 107 107 TYR TYR A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 GLN 117 116 116 GLN GLN A . n A 1 118 ARG 118 117 117 ARG ARG A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 ARG 122 121 121 ARG ARG A . n A 1 123 MSE 123 122 122 MSE MSE A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 ALA 136 135 135 ALA ALA A . n A 1 137 HIS 137 136 136 HIS HIS A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 VAL 144 143 143 VAL VAL A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 THR 148 147 147 THR THR A . n A 1 149 HIS 149 148 148 HIS HIS A . n A 1 150 ASP 150 149 149 ASP ASP A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 GLY 157 156 156 GLY GLY A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 VAL 159 158 158 VAL VAL A . n A 1 160 ARG 160 159 159 ARG ARG A . n A 1 161 GLU 161 160 160 GLU GLU A . n A 1 162 THR 162 161 161 THR THR A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 LYS 165 164 164 LYS LYS A . n A 1 166 VAL 166 165 165 VAL VAL A . n A 1 167 ILE 167 166 166 ILE ILE A . n A 1 168 GLY 168 167 167 GLY GLY A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 TYR 175 174 174 TYR TYR A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 SER 178 177 177 SER SER A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 TYR 180 179 179 TYR TYR A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 LYS 182 181 181 LYS LYS A . n A 1 183 ILE 183 182 182 ILE ILE A . n A 1 184 GLN 184 183 183 GLN GLN A . n A 1 185 LEU 185 184 184 LEU LEU A . n A 1 186 LEU 186 185 185 LEU LEU A . n A 1 187 ASP 187 186 186 ASP ASP A . n A 1 188 LEU 188 187 187 LEU LEU A . n A 1 189 LYS 189 188 188 LYS LYS A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 LEU 191 190 190 LEU LEU A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 GLU 196 195 195 GLU GLU A . n A 1 197 SER 197 196 196 SER SER A . n A 1 198 ARG 198 197 197 ARG ARG A . n A 1 199 GLY 199 198 198 GLY GLY A . n A 1 200 GLN 200 199 ? ? ? A . n A 1 201 GLY 201 200 ? ? ? A . n A 1 202 ARG 202 201 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD 1 301 301 MPD MPD A . C 2 MPD 1 302 302 MPD MPD A . D 2 MPD 1 303 303 MPD MPD A . E 3 HOH 1 304 1 HOH HOH A . E 3 HOH 2 305 2 HOH HOH A . E 3 HOH 3 306 3 HOH HOH A . E 3 HOH 4 307 4 HOH HOH A . E 3 HOH 5 308 5 HOH HOH A . E 3 HOH 6 309 6 HOH HOH A . E 3 HOH 7 310 7 HOH HOH A . E 3 HOH 8 311 8 HOH HOH A . E 3 HOH 9 312 9 HOH HOH A . E 3 HOH 10 313 10 HOH HOH A . E 3 HOH 11 314 11 HOH HOH A . E 3 HOH 12 315 12 HOH HOH A . E 3 HOH 13 316 13 HOH HOH A . E 3 HOH 14 317 14 HOH HOH A . E 3 HOH 15 318 15 HOH HOH A . E 3 HOH 16 319 16 HOH HOH A . E 3 HOH 17 320 17 HOH HOH A . E 3 HOH 18 321 18 HOH HOH A . E 3 HOH 19 322 19 HOH HOH A . E 3 HOH 20 323 20 HOH HOH A . E 3 HOH 21 324 21 HOH HOH A . E 3 HOH 22 325 22 HOH HOH A . E 3 HOH 23 326 23 HOH HOH A . E 3 HOH 24 327 24 HOH HOH A . E 3 HOH 25 328 25 HOH HOH A . E 3 HOH 26 329 26 HOH HOH A . E 3 HOH 27 330 27 HOH HOH A . E 3 HOH 28 331 28 HOH HOH A . E 3 HOH 29 332 29 HOH HOH A . E 3 HOH 30 333 30 HOH HOH A . E 3 HOH 31 334 31 HOH HOH A . E 3 HOH 32 335 32 HOH HOH A . E 3 HOH 33 336 33 HOH HOH A . E 3 HOH 34 337 34 HOH HOH A . E 3 HOH 35 338 35 HOH HOH A . E 3 HOH 36 339 36 HOH HOH A . E 3 HOH 37 340 37 HOH HOH A . E 3 HOH 38 341 38 HOH HOH A . E 3 HOH 39 342 39 HOH HOH A . E 3 HOH 40 343 40 HOH HOH A . E 3 HOH 41 344 41 HOH HOH A . E 3 HOH 42 345 42 HOH HOH A . E 3 HOH 43 346 43 HOH HOH A . E 3 HOH 44 347 44 HOH HOH A . E 3 HOH 45 348 45 HOH HOH A . E 3 HOH 46 349 46 HOH HOH A . E 3 HOH 47 350 47 HOH HOH A . E 3 HOH 48 351 48 HOH HOH A . E 3 HOH 49 352 49 HOH HOH A . E 3 HOH 50 353 50 HOH HOH A . E 3 HOH 51 354 51 HOH HOH A . E 3 HOH 52 355 52 HOH HOH A . E 3 HOH 53 356 53 HOH HOH A . E 3 HOH 54 357 54 HOH HOH A . E 3 HOH 55 358 55 HOH HOH A . E 3 HOH 56 359 56 HOH HOH A . E 3 HOH 57 360 57 HOH HOH A . E 3 HOH 58 361 58 HOH HOH A . E 3 HOH 59 362 59 HOH HOH A . E 3 HOH 60 363 60 HOH HOH A . E 3 HOH 61 364 61 HOH HOH A . E 3 HOH 62 365 62 HOH HOH A . E 3 HOH 63 366 63 HOH HOH A . E 3 HOH 64 367 64 HOH HOH A . E 3 HOH 65 368 65 HOH HOH A . E 3 HOH 66 369 66 HOH HOH A . E 3 HOH 67 370 67 HOH HOH A . E 3 HOH 68 371 68 HOH HOH A . E 3 HOH 69 372 69 HOH HOH A . E 3 HOH 70 373 70 HOH HOH A . E 3 HOH 71 374 71 HOH HOH A . E 3 HOH 72 375 72 HOH HOH A . E 3 HOH 73 376 73 HOH HOH A . E 3 HOH 74 377 74 HOH HOH A . E 3 HOH 75 378 75 HOH HOH A . E 3 HOH 76 379 76 HOH HOH A . E 3 HOH 77 380 77 HOH HOH A . E 3 HOH 78 381 78 HOH HOH A . E 3 HOH 79 382 79 HOH HOH A . E 3 HOH 80 383 80 HOH HOH A . E 3 HOH 81 384 81 HOH HOH A . E 3 HOH 82 385 82 HOH HOH A . E 3 HOH 83 386 83 HOH HOH A . E 3 HOH 84 387 84 HOH HOH A . E 3 HOH 85 388 85 HOH HOH A . E 3 HOH 86 389 86 HOH HOH A . E 3 HOH 87 390 87 HOH HOH A . E 3 HOH 88 391 88 HOH HOH A . E 3 HOH 89 392 89 HOH HOH A . E 3 HOH 90 393 90 HOH HOH A . E 3 HOH 91 394 91 HOH HOH A . E 3 HOH 92 395 92 HOH HOH A . E 3 HOH 93 396 93 HOH HOH A . E 3 HOH 94 397 94 HOH HOH A . E 3 HOH 95 398 95 HOH HOH A . E 3 HOH 96 399 96 HOH HOH A . E 3 HOH 97 400 97 HOH HOH A . E 3 HOH 98 401 98 HOH HOH A . E 3 HOH 99 402 99 HOH HOH A . E 3 HOH 100 403 100 HOH HOH A . E 3 HOH 101 404 101 HOH HOH A . E 3 HOH 102 405 102 HOH HOH A . E 3 HOH 103 406 103 HOH HOH A . E 3 HOH 104 407 104 HOH HOH A . E 3 HOH 105 408 105 HOH HOH A . E 3 HOH 106 409 106 HOH HOH A . E 3 HOH 107 410 107 HOH HOH A . E 3 HOH 108 411 108 HOH HOH A . E 3 HOH 109 412 109 HOH HOH A . E 3 HOH 110 413 110 HOH HOH A . E 3 HOH 111 414 111 HOH HOH A . E 3 HOH 112 415 112 HOH HOH A . E 3 HOH 113 416 113 HOH HOH A . E 3 HOH 114 417 114 HOH HOH A . E 3 HOH 115 418 115 HOH HOH A . E 3 HOH 116 419 116 HOH HOH A . E 3 HOH 117 420 117 HOH HOH A . E 3 HOH 118 421 118 HOH HOH A . E 3 HOH 119 422 119 HOH HOH A . E 3 HOH 120 423 120 HOH HOH A . E 3 HOH 121 424 121 HOH HOH A . E 3 HOH 122 425 122 HOH HOH A . E 3 HOH 123 426 123 HOH HOH A . E 3 HOH 124 427 124 HOH HOH A . E 3 HOH 125 428 125 HOH HOH A . E 3 HOH 126 429 126 HOH HOH A . E 3 HOH 127 430 127 HOH HOH A . E 3 HOH 128 431 128 HOH HOH A . E 3 HOH 129 432 129 HOH HOH A . E 3 HOH 130 433 130 HOH HOH A . E 3 HOH 131 434 131 HOH HOH A . E 3 HOH 132 435 132 HOH HOH A . E 3 HOH 133 436 133 HOH HOH A . E 3 HOH 134 437 134 HOH HOH A . E 3 HOH 135 438 135 HOH HOH A . E 3 HOH 136 439 136 HOH HOH A . E 3 HOH 137 440 137 HOH HOH A . E 3 HOH 138 441 138 HOH HOH A . E 3 HOH 139 442 139 HOH HOH A . E 3 HOH 140 443 140 HOH HOH A . E 3 HOH 141 444 141 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 123 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 122 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5090 ? 1 MORE -89.1 ? 1 'SSA (A^2)' 18990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BSS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 133 ? ? -66.07 0.79 2 1 SER A 157 ? ? -124.97 -161.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A THR 1 ? A THR 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A VAL 3 ? A VAL 4 5 1 Y 1 A ARG 4 ? A ARG 5 6 1 Y 1 A GLN 199 ? A GLN 200 7 1 Y 1 A GLY 200 ? A GLY 201 8 1 Y 1 A ARG 201 ? A ARG 202 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH #