data_2ZD0 # _entry.id 2ZD0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZD0 pdb_00002zd0 10.2210/pdb2zd0/pdb RCSB RCSB027816 ? ? WWPDB D_1000027816 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2EXS 'Fusion of three TRAP monomers' unspecified PDB 2EXT 'Fusion of four TRAP monomers' unspecified PDB 1QAW 'B. stearothermophilus wild-type TRAP' unspecified PDB 2ZCZ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZD0 _pdbx_database_status.recvd_initial_deposition_date 2007-11-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Watanabe, M.' 1 'Mishima, Y.' 2 'Yamashita, I.' 3 'Park, S.Y.' 4 'Tame, J.R.H.' 5 'Heddle, J.G.' 6 # _citation.id primary _citation.title 'Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 17 _citation.page_first 518 _citation.page_last 526 _citation.year 2008 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18287284 _citation.pdbx_database_id_DOI 10.1110/ps.073059308 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Watanabe, M.' 1 ? primary 'Mishima, Y.' 2 ? primary 'Yamashita, I.' 3 ? primary 'Park, S.Y.' 4 ? primary 'Tame, J.R.' 5 ? primary 'Heddle, J.G.' 6 ? # _cell.entry_id 2ZD0 _cell.length_a 109.676 _cell.length_b 109.676 _cell.length_c 36.756 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZD0 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription attenuation protein mtrB' 8612.765 3 ? ? ? ? 2 non-polymer syn TRYPTOPHAN 204.225 3 ? ? ? ? 3 water nat water 18.015 39 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tryptophan RNA-binding attenuator protein, Trp RNA-binding attenuation protein, TRAP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGKKAAAAA _entity_poly.pdbx_seq_one_letter_code_can MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGKKAAAAA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 TYR n 1 3 THR n 1 4 ASN n 1 5 SER n 1 6 ASP n 1 7 PHE n 1 8 VAL n 1 9 VAL n 1 10 ILE n 1 11 LYS n 1 12 ALA n 1 13 LEU n 1 14 GLU n 1 15 ASP n 1 16 GLY n 1 17 VAL n 1 18 ASN n 1 19 VAL n 1 20 ILE n 1 21 GLY n 1 22 LEU n 1 23 THR n 1 24 ARG n 1 25 GLY n 1 26 ALA n 1 27 ASP n 1 28 THR n 1 29 ARG n 1 30 PHE n 1 31 HIS n 1 32 HIS n 1 33 SER n 1 34 GLU n 1 35 LYS n 1 36 LEU n 1 37 ASP n 1 38 LYS n 1 39 GLY n 1 40 GLU n 1 41 VAL n 1 42 LEU n 1 43 ILE n 1 44 ALA n 1 45 GLN n 1 46 PHE n 1 47 THR n 1 48 GLU n 1 49 HIS n 1 50 THR n 1 51 SER n 1 52 ALA n 1 53 ILE n 1 54 LYS n 1 55 VAL n 1 56 ARG n 1 57 GLY n 1 58 LYS n 1 59 ALA n 1 60 TYR n 1 61 ILE n 1 62 GLN n 1 63 THR n 1 64 ARG n 1 65 HIS n 1 66 GLY n 1 67 VAL n 1 68 ILE n 1 69 GLU n 1 70 SER n 1 71 GLU n 1 72 GLY n 1 73 LYS n 1 74 LYS n 1 75 ALA n 1 76 ALA n 1 77 ALA n 1 78 ALA n 1 79 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacillus _entity_src_gen.pdbx_gene_src_gene mtrB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCA 26, ATCC 12980' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTRB_BACST _struct_ref.pdbx_db_accession Q9X6J6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGKK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZD0 A 1 ? 74 ? Q9X6J6 1 ? 74 ? 3 76 2 1 2ZD0 B 1 ? 74 ? Q9X6J6 1 ? 74 ? 3 76 3 1 2ZD0 C 1 ? 74 ? Q9X6J6 1 ? 74 ? 3 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZD0 ALA A 75 ? UNP Q9X6J6 ? ? linker 77 1 1 2ZD0 ALA A 76 ? UNP Q9X6J6 ? ? linker 78 2 1 2ZD0 ALA A 77 ? UNP Q9X6J6 ? ? linker 79 3 1 2ZD0 ALA A 78 ? UNP Q9X6J6 ? ? linker 80 4 1 2ZD0 ALA A 79 ? UNP Q9X6J6 ? ? linker 81 5 2 2ZD0 ALA B 75 ? UNP Q9X6J6 ? ? linker 77 6 2 2ZD0 ALA B 76 ? UNP Q9X6J6 ? ? linker 78 7 2 2ZD0 ALA B 77 ? UNP Q9X6J6 ? ? linker 79 8 2 2ZD0 ALA B 78 ? UNP Q9X6J6 ? ? linker 80 9 2 2ZD0 ALA B 79 ? UNP Q9X6J6 ? ? linker 81 10 3 2ZD0 ALA C 75 ? UNP Q9X6J6 ? ? linker 77 11 3 2ZD0 ALA C 76 ? UNP Q9X6J6 ? ? linker 78 12 3 2ZD0 ALA C 77 ? UNP Q9X6J6 ? ? linker 79 13 3 2ZD0 ALA C 78 ? UNP Q9X6J6 ? ? linker 80 14 3 2ZD0 ALA C 79 ? UNP Q9X6J6 ? ? linker 81 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZD0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.pdbx_details '0.09M CAPS pH 10.5, 30%(w/v) PEG300, 0.15M Ammonium sulfate, 10mM L-tryptophan, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-06-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2ZD0 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 7898 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.B_iso_Wilson_estimate 27.4 _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 93.6 _reflns_shell.Rmerge_I_obs 0.221 _reflns_shell.pdbx_Rsym_value 0.246 _reflns_shell.meanI_over_sigI_obs 11.7 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 744 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ZD0 _refine.ls_number_reflns_obs 7503 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.19971 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19691 _refine.ls_R_factor_R_free 0.25647 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 363 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 27.491 _refine.aniso_B[1][1] -0.35 _refine.aniso_B[2][2] -0.35 _refine.aniso_B[3][3] 0.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2EXS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.609 _refine.pdbx_overall_ESU_R_Free 0.301 _refine.overall_SU_ML 0.185 _refine.overall_SU_B 7.967 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1519 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1603 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1591 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.422 1.927 ? 2141 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.103 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.180 23.108 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.015 15.000 ? 283 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.298 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 245 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1181 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 529 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 1015 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 83 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.184 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.129 0.200 ? 21 'X-RAY DIFFRACTION' ? r_mcbond_it 0.744 1.500 ? 1007 'X-RAY DIFFRACTION' ? r_mcangle_it 1.235 2.000 ? 1562 'X-RAY DIFFRACTION' ? r_scbond_it 1.855 3.000 ? 664 'X-RAY DIFFRACTION' ? r_scangle_it 3.034 4.500 ? 579 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.497 _refine_ls_shell.d_res_low 2.561 _refine_ls_shell.number_reflns_R_work 511 _refine_ls_shell.R_factor_R_work 0.195 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.R_factor_R_free_error 0.080 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 7503 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZD0 _struct.title 'Crystal structures and thermostability of mutant TRAP3 A5 (ENGINEERED TRAP)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZD0 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'LINKER, ARTIFICIAL, ENGINEERED, RING PROTEIN, 12-mer, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.details ;THE POLYPEPTIDE CHAIN CONTAINS THREE (3) COPIES OF THE TRAP PROTEIN LINKED IN TANDEM, WHICH ARRANGE THEMSELVES TO MAKE A 12-MER RING IN SOLUTION. EACH CHAIN IN THIS MODEL REPRESENTS ONE COPY OF TRAP, NOT A SEPARATE POLYPEPTIDE. THE LINKER PEPTIDES ARE NOT VISIBLE IN THE ELECTRON DENSITY. THE 12MER RINGS ARE ALIGNED WITH THE CRYSTALLOGRAPHIC FOUR-FOLD AXIS. THERE ARE THREE COPIES OF TRAP PRESENT IN THE ASYMMETRIC UNIT. FOR THIS PROTEIN, CALLED T3A5, THE LINKER PEPTIDES CONSIST OF FIVE (5) ALANINE RESIDUES. ; # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 7 ? C ? 7 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 41 ? GLN A 45 ? VAL A 43 GLN A 47 A 2 PHE A 7 ? ALA A 12 ? PHE A 9 ALA A 14 A 3 ALA A 59 ? GLN A 62 ? ALA A 61 GLN A 64 B 1 PHE A 30 ? LEU A 36 ? PHE A 32 LEU A 38 B 2 VAL A 17 ? THR A 23 ? VAL A 19 THR A 25 B 3 THR A 50 ? ARG A 56 ? THR A 52 ARG A 58 B 4 VAL B 41 ? GLN B 45 ? VAL B 43 GLN B 47 B 5 PHE B 7 ? ALA B 12 ? PHE B 9 ALA B 14 B 6 ALA B 59 ? THR B 63 ? ALA B 61 THR B 65 B 7 GLY B 66 ? GLU B 69 ? GLY B 68 GLU B 71 C 1 PHE B 30 ? LEU B 36 ? PHE B 32 LEU B 38 C 2 VAL B 17 ? THR B 23 ? VAL B 19 THR B 25 C 3 THR B 50 ? ARG B 56 ? THR B 52 ARG B 58 C 4 VAL C 41 ? GLN C 45 ? VAL C 43 GLN C 47 C 5 PHE C 7 ? ALA C 12 ? PHE C 9 ALA C 14 C 6 ALA C 59 ? THR C 63 ? ALA C 61 THR C 65 C 7 GLY C 66 ? SER C 70 ? GLY C 68 SER C 72 D 1 PHE C 30 ? LEU C 36 ? PHE C 32 LEU C 38 D 2 VAL C 17 ? THR C 23 ? VAL C 19 THR C 25 D 3 THR C 50 ? ARG C 56 ? THR C 52 ARG C 58 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 44 ? O ALA A 46 N VAL A 8 ? N VAL A 10 A 2 3 N VAL A 9 ? N VAL A 11 O GLN A 62 ? O GLN A 64 B 1 2 O GLU A 34 ? O GLU A 36 N VAL A 19 ? N VAL A 21 B 2 3 N LEU A 22 ? N LEU A 24 O ALA A 52 ? O ALA A 54 B 3 4 N ILE A 53 ? N ILE A 55 O ILE B 43 ? O ILE B 45 B 4 5 O ALA B 44 ? O ALA B 46 N VAL B 8 ? N VAL B 10 B 5 6 N LYS B 11 ? N LYS B 13 O TYR B 60 ? O TYR B 62 B 6 7 N THR B 63 ? N THR B 65 O GLY B 66 ? O GLY B 68 C 1 2 O GLU B 34 ? O GLU B 36 N VAL B 19 ? N VAL B 21 C 2 3 N ILE B 20 ? N ILE B 22 O LYS B 54 ? O LYS B 56 C 3 4 N SER B 51 ? N SER B 53 O GLN C 45 ? O GLN C 47 C 4 5 O LEU C 42 ? O LEU C 44 N ILE C 10 ? N ILE C 12 C 5 6 N LYS C 11 ? N LYS C 13 O TYR C 60 ? O TYR C 62 C 6 7 N ALA C 59 ? N ALA C 61 O SER C 70 ? O SER C 72 D 1 2 O LEU C 36 ? O LEU C 38 N VAL C 17 ? N VAL C 19 D 2 3 N ILE C 20 ? N ILE C 22 O LYS C 54 ? O LYS C 56 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TRP 100 ? 12 'BINDING SITE FOR RESIDUE TRP A 100' AC2 Software B TRP 100 ? 12 'BINDING SITE FOR RESIDUE TRP B 100' AC3 Software C TRP 100 ? 11 'BINDING SITE FOR RESIDUE TRP C 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 THR A 23 ? THR A 25 . ? 1_555 ? 2 AC1 12 ARG A 24 ? ARG A 26 . ? 1_555 ? 3 AC1 12 GLY A 25 ? GLY A 27 . ? 1_555 ? 4 AC1 12 ASP A 27 ? ASP A 29 . ? 1_555 ? 5 AC1 12 THR A 28 ? THR A 30 . ? 1_555 ? 6 AC1 12 SER A 51 ? SER A 53 . ? 1_555 ? 7 AC1 12 GLY B 21 ? GLY B 23 . ? 1_555 ? 8 AC1 12 GLN B 45 ? GLN B 47 . ? 1_555 ? 9 AC1 12 THR B 47 ? THR B 49 . ? 1_555 ? 10 AC1 12 HIS B 49 ? HIS B 51 . ? 1_555 ? 11 AC1 12 THR B 50 ? THR B 52 . ? 1_555 ? 12 AC1 12 HOH H . ? HOH B 105 . ? 1_555 ? 13 AC2 12 THR B 23 ? THR B 25 . ? 1_555 ? 14 AC2 12 ARG B 24 ? ARG B 26 . ? 1_555 ? 15 AC2 12 GLY B 25 ? GLY B 27 . ? 1_555 ? 16 AC2 12 ASP B 27 ? ASP B 29 . ? 1_555 ? 17 AC2 12 THR B 28 ? THR B 30 . ? 1_555 ? 18 AC2 12 SER B 51 ? SER B 53 . ? 1_555 ? 19 AC2 12 GLY C 21 ? GLY C 23 . ? 1_555 ? 20 AC2 12 ALA C 44 ? ALA C 46 . ? 1_555 ? 21 AC2 12 GLN C 45 ? GLN C 47 . ? 1_555 ? 22 AC2 12 THR C 47 ? THR C 49 . ? 1_555 ? 23 AC2 12 THR C 50 ? THR C 52 . ? 1_555 ? 24 AC2 12 HOH I . ? HOH C 101 . ? 1_555 ? 25 AC3 11 GLY A 21 ? GLY A 23 . ? 3_545 ? 26 AC3 11 ALA A 44 ? ALA A 46 . ? 3_545 ? 27 AC3 11 GLN A 45 ? GLN A 47 . ? 3_545 ? 28 AC3 11 THR A 47 ? THR A 49 . ? 3_545 ? 29 AC3 11 THR A 50 ? THR A 52 . ? 3_545 ? 30 AC3 11 THR C 23 ? THR C 25 . ? 1_555 ? 31 AC3 11 ARG C 24 ? ARG C 26 . ? 1_555 ? 32 AC3 11 GLY C 25 ? GLY C 27 . ? 1_555 ? 33 AC3 11 ASP C 27 ? ASP C 29 . ? 1_555 ? 34 AC3 11 THR C 28 ? THR C 30 . ? 1_555 ? 35 AC3 11 SER C 51 ? SER C 53 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZD0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZD0 _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027206 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 3 ? ? ? A . n A 1 2 TYR 2 4 ? ? ? A . n A 1 3 THR 3 5 ? ? ? A . n A 1 4 ASN 4 6 ? ? ? A . n A 1 5 SER 5 7 7 SER SER A . n A 1 6 ASP 6 8 8 ASP ASP A . n A 1 7 PHE 7 9 9 PHE PHE A . n A 1 8 VAL 8 10 10 VAL VAL A . n A 1 9 VAL 9 11 11 VAL VAL A . n A 1 10 ILE 10 12 12 ILE ILE A . n A 1 11 LYS 11 13 13 LYS LYS A . n A 1 12 ALA 12 14 14 ALA ALA A . n A 1 13 LEU 13 15 15 LEU LEU A . n A 1 14 GLU 14 16 16 GLU GLU A . n A 1 15 ASP 15 17 17 ASP ASP A . n A 1 16 GLY 16 18 18 GLY GLY A . n A 1 17 VAL 17 19 19 VAL VAL A . n A 1 18 ASN 18 20 20 ASN ASN A . n A 1 19 VAL 19 21 21 VAL VAL A . n A 1 20 ILE 20 22 22 ILE ILE A . n A 1 21 GLY 21 23 23 GLY GLY A . n A 1 22 LEU 22 24 24 LEU LEU A . n A 1 23 THR 23 25 25 THR THR A . n A 1 24 ARG 24 26 26 ARG ARG A . n A 1 25 GLY 25 27 27 GLY GLY A . n A 1 26 ALA 26 28 28 ALA ALA A . n A 1 27 ASP 27 29 29 ASP ASP A . n A 1 28 THR 28 30 30 THR THR A . n A 1 29 ARG 29 31 31 ARG ARG A . n A 1 30 PHE 30 32 32 PHE PHE A . n A 1 31 HIS 31 33 33 HIS HIS A . n A 1 32 HIS 32 34 34 HIS HIS A . n A 1 33 SER 33 35 35 SER SER A . n A 1 34 GLU 34 36 36 GLU GLU A . n A 1 35 LYS 35 37 37 LYS LYS A . n A 1 36 LEU 36 38 38 LEU LEU A . n A 1 37 ASP 37 39 39 ASP ASP A . n A 1 38 LYS 38 40 40 LYS LYS A . n A 1 39 GLY 39 41 41 GLY GLY A . n A 1 40 GLU 40 42 42 GLU GLU A . n A 1 41 VAL 41 43 43 VAL VAL A . n A 1 42 LEU 42 44 44 LEU LEU A . n A 1 43 ILE 43 45 45 ILE ILE A . n A 1 44 ALA 44 46 46 ALA ALA A . n A 1 45 GLN 45 47 47 GLN GLN A . n A 1 46 PHE 46 48 48 PHE PHE A . n A 1 47 THR 47 49 49 THR THR A . n A 1 48 GLU 48 50 50 GLU GLU A . n A 1 49 HIS 49 51 51 HIS HIS A . n A 1 50 THR 50 52 52 THR THR A . n A 1 51 SER 51 53 53 SER SER A . n A 1 52 ALA 52 54 54 ALA ALA A . n A 1 53 ILE 53 55 55 ILE ILE A . n A 1 54 LYS 54 56 56 LYS LYS A . n A 1 55 VAL 55 57 57 VAL VAL A . n A 1 56 ARG 56 58 58 ARG ARG A . n A 1 57 GLY 57 59 59 GLY GLY A . n A 1 58 LYS 58 60 60 LYS LYS A . n A 1 59 ALA 59 61 61 ALA ALA A . n A 1 60 TYR 60 62 62 TYR TYR A . n A 1 61 ILE 61 63 63 ILE ILE A . n A 1 62 GLN 62 64 64 GLN GLN A . n A 1 63 THR 63 65 65 THR THR A . n A 1 64 ARG 64 66 66 ARG ARG A . n A 1 65 HIS 65 67 67 HIS HIS A . n A 1 66 GLY 66 68 68 GLY GLY A . n A 1 67 VAL 67 69 69 VAL VAL A . n A 1 68 ILE 68 70 ? ? ? A . n A 1 69 GLU 69 71 ? ? ? A . n A 1 70 SER 70 72 ? ? ? A . n A 1 71 GLU 71 73 ? ? ? A . n A 1 72 GLY 72 74 ? ? ? A . n A 1 73 LYS 73 75 ? ? ? A . n A 1 74 LYS 74 76 ? ? ? A . n A 1 75 ALA 75 77 ? ? ? A . n A 1 76 ALA 76 78 ? ? ? A . n A 1 77 ALA 77 79 ? ? ? A . n A 1 78 ALA 78 80 ? ? ? A . n A 1 79 ALA 79 81 ? ? ? A . n B 1 1 MET 1 3 ? ? ? B . n B 1 2 TYR 2 4 ? ? ? B . n B 1 3 THR 3 5 ? ? ? B . n B 1 4 ASN 4 6 ? ? ? B . n B 1 5 SER 5 7 7 SER SER B . n B 1 6 ASP 6 8 8 ASP ASP B . n B 1 7 PHE 7 9 9 PHE PHE B . n B 1 8 VAL 8 10 10 VAL VAL B . n B 1 9 VAL 9 11 11 VAL VAL B . n B 1 10 ILE 10 12 12 ILE ILE B . n B 1 11 LYS 11 13 13 LYS LYS B . n B 1 12 ALA 12 14 14 ALA ALA B . n B 1 13 LEU 13 15 15 LEU LEU B . n B 1 14 GLU 14 16 16 GLU GLU B . n B 1 15 ASP 15 17 17 ASP ASP B . n B 1 16 GLY 16 18 18 GLY GLY B . n B 1 17 VAL 17 19 19 VAL VAL B . n B 1 18 ASN 18 20 20 ASN ASN B . n B 1 19 VAL 19 21 21 VAL VAL B . n B 1 20 ILE 20 22 22 ILE ILE B . n B 1 21 GLY 21 23 23 GLY GLY B . n B 1 22 LEU 22 24 24 LEU LEU B . n B 1 23 THR 23 25 25 THR THR B . n B 1 24 ARG 24 26 26 ARG ARG B . n B 1 25 GLY 25 27 27 GLY GLY B . n B 1 26 ALA 26 28 28 ALA ALA B . n B 1 27 ASP 27 29 29 ASP ASP B . n B 1 28 THR 28 30 30 THR THR B . n B 1 29 ARG 29 31 31 ARG ARG B . n B 1 30 PHE 30 32 32 PHE PHE B . n B 1 31 HIS 31 33 33 HIS HIS B . n B 1 32 HIS 32 34 34 HIS HIS B . n B 1 33 SER 33 35 35 SER SER B . n B 1 34 GLU 34 36 36 GLU GLU B . n B 1 35 LYS 35 37 37 LYS LYS B . n B 1 36 LEU 36 38 38 LEU LEU B . n B 1 37 ASP 37 39 39 ASP ASP B . n B 1 38 LYS 38 40 40 LYS LYS B . n B 1 39 GLY 39 41 41 GLY GLY B . n B 1 40 GLU 40 42 42 GLU GLU B . n B 1 41 VAL 41 43 43 VAL VAL B . n B 1 42 LEU 42 44 44 LEU LEU B . n B 1 43 ILE 43 45 45 ILE ILE B . n B 1 44 ALA 44 46 46 ALA ALA B . n B 1 45 GLN 45 47 47 GLN GLN B . n B 1 46 PHE 46 48 48 PHE PHE B . n B 1 47 THR 47 49 49 THR THR B . n B 1 48 GLU 48 50 50 GLU GLU B . n B 1 49 HIS 49 51 51 HIS HIS B . n B 1 50 THR 50 52 52 THR THR B . n B 1 51 SER 51 53 53 SER SER B . n B 1 52 ALA 52 54 54 ALA ALA B . n B 1 53 ILE 53 55 55 ILE ILE B . n B 1 54 LYS 54 56 56 LYS LYS B . n B 1 55 VAL 55 57 57 VAL VAL B . n B 1 56 ARG 56 58 58 ARG ARG B . n B 1 57 GLY 57 59 59 GLY GLY B . n B 1 58 LYS 58 60 60 LYS LYS B . n B 1 59 ALA 59 61 61 ALA ALA B . n B 1 60 TYR 60 62 62 TYR TYR B . n B 1 61 ILE 61 63 63 ILE ILE B . n B 1 62 GLN 62 64 64 GLN GLN B . n B 1 63 THR 63 65 65 THR THR B . n B 1 64 ARG 64 66 66 ARG ARG B . n B 1 65 HIS 65 67 67 HIS HIS B . n B 1 66 GLY 66 68 68 GLY GLY B . n B 1 67 VAL 67 69 69 VAL VAL B . n B 1 68 ILE 68 70 70 ILE ILE B . n B 1 69 GLU 69 71 71 GLU GLU B . n B 1 70 SER 70 72 72 SER SER B . n B 1 71 GLU 71 73 ? ? ? B . n B 1 72 GLY 72 74 ? ? ? B . n B 1 73 LYS 73 75 ? ? ? B . n B 1 74 LYS 74 76 ? ? ? B . n B 1 75 ALA 75 77 ? ? ? B . n B 1 76 ALA 76 78 ? ? ? B . n B 1 77 ALA 77 79 ? ? ? B . n B 1 78 ALA 78 80 ? ? ? B . n B 1 79 ALA 79 81 ? ? ? B . n C 1 1 MET 1 3 ? ? ? C . n C 1 2 TYR 2 4 ? ? ? C . n C 1 3 THR 3 5 ? ? ? C . n C 1 4 ASN 4 6 ? ? ? C . n C 1 5 SER 5 7 7 SER SER C . n C 1 6 ASP 6 8 8 ASP ASP C . n C 1 7 PHE 7 9 9 PHE PHE C . n C 1 8 VAL 8 10 10 VAL VAL C . n C 1 9 VAL 9 11 11 VAL VAL C . n C 1 10 ILE 10 12 12 ILE ILE C . n C 1 11 LYS 11 13 13 LYS LYS C . n C 1 12 ALA 12 14 14 ALA ALA C . n C 1 13 LEU 13 15 15 LEU LEU C . n C 1 14 GLU 14 16 16 GLU GLU C . n C 1 15 ASP 15 17 17 ASP ASP C . n C 1 16 GLY 16 18 18 GLY GLY C . n C 1 17 VAL 17 19 19 VAL VAL C . n C 1 18 ASN 18 20 20 ASN ASN C . n C 1 19 VAL 19 21 21 VAL VAL C . n C 1 20 ILE 20 22 22 ILE ILE C . n C 1 21 GLY 21 23 23 GLY GLY C . n C 1 22 LEU 22 24 24 LEU LEU C . n C 1 23 THR 23 25 25 THR THR C . n C 1 24 ARG 24 26 26 ARG ARG C . n C 1 25 GLY 25 27 27 GLY GLY C . n C 1 26 ALA 26 28 28 ALA ALA C . n C 1 27 ASP 27 29 29 ASP ASP C . n C 1 28 THR 28 30 30 THR THR C . n C 1 29 ARG 29 31 31 ARG ARG C . n C 1 30 PHE 30 32 32 PHE PHE C . n C 1 31 HIS 31 33 33 HIS HIS C . n C 1 32 HIS 32 34 34 HIS HIS C . n C 1 33 SER 33 35 35 SER SER C . n C 1 34 GLU 34 36 36 GLU GLU C . n C 1 35 LYS 35 37 37 LYS LYS C . n C 1 36 LEU 36 38 38 LEU LEU C . n C 1 37 ASP 37 39 39 ASP ASP C . n C 1 38 LYS 38 40 40 LYS LYS C . n C 1 39 GLY 39 41 41 GLY GLY C . n C 1 40 GLU 40 42 42 GLU GLU C . n C 1 41 VAL 41 43 43 VAL VAL C . n C 1 42 LEU 42 44 44 LEU LEU C . n C 1 43 ILE 43 45 45 ILE ILE C . n C 1 44 ALA 44 46 46 ALA ALA C . n C 1 45 GLN 45 47 47 GLN GLN C . n C 1 46 PHE 46 48 48 PHE PHE C . n C 1 47 THR 47 49 49 THR THR C . n C 1 48 GLU 48 50 50 GLU GLU C . n C 1 49 HIS 49 51 51 HIS HIS C . n C 1 50 THR 50 52 52 THR THR C . n C 1 51 SER 51 53 53 SER SER C . n C 1 52 ALA 52 54 54 ALA ALA C . n C 1 53 ILE 53 55 55 ILE ILE C . n C 1 54 LYS 54 56 56 LYS LYS C . n C 1 55 VAL 55 57 57 VAL VAL C . n C 1 56 ARG 56 58 58 ARG ARG C . n C 1 57 GLY 57 59 59 GLY GLY C . n C 1 58 LYS 58 60 60 LYS LYS C . n C 1 59 ALA 59 61 61 ALA ALA C . n C 1 60 TYR 60 62 62 TYR TYR C . n C 1 61 ILE 61 63 63 ILE ILE C . n C 1 62 GLN 62 64 64 GLN GLN C . n C 1 63 THR 63 65 65 THR THR C . n C 1 64 ARG 64 66 66 ARG ARG C . n C 1 65 HIS 65 67 67 HIS HIS C . n C 1 66 GLY 66 68 68 GLY GLY C . n C 1 67 VAL 67 69 69 VAL VAL C . n C 1 68 ILE 68 70 70 ILE ILE C . n C 1 69 GLU 69 71 71 GLU GLU C . n C 1 70 SER 70 72 72 SER SER C . n C 1 71 GLU 71 73 ? ? ? C . n C 1 72 GLY 72 74 ? ? ? C . n C 1 73 LYS 73 75 ? ? ? C . n C 1 74 LYS 74 76 ? ? ? C . n C 1 75 ALA 75 77 ? ? ? C . n C 1 76 ALA 76 78 ? ? ? C . n C 1 77 ALA 77 79 ? ? ? C . n C 1 78 ALA 78 80 ? ? ? C . n C 1 79 ALA 79 81 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRP 1 100 100 TRP TRP A . E 2 TRP 1 100 100 TRP TRP B . F 2 TRP 1 100 100 TRP TRP C . G 3 HOH 1 101 4 HOH HOH A . G 3 HOH 2 102 7 HOH HOH A . G 3 HOH 3 103 8 HOH HOH A . G 3 HOH 4 104 14 HOH HOH A . G 3 HOH 5 105 15 HOH HOH A . G 3 HOH 6 106 17 HOH HOH A . G 3 HOH 7 107 19 HOH HOH A . G 3 HOH 8 108 20 HOH HOH A . G 3 HOH 9 109 24 HOH HOH A . G 3 HOH 10 110 27 HOH HOH A . G 3 HOH 11 111 30 HOH HOH A . G 3 HOH 12 112 31 HOH HOH A . G 3 HOH 13 113 36 HOH HOH A . G 3 HOH 14 114 39 HOH HOH A . H 3 HOH 1 101 3 HOH HOH B . H 3 HOH 2 102 6 HOH HOH B . H 3 HOH 3 103 9 HOH HOH B . H 3 HOH 4 104 10 HOH HOH B . H 3 HOH 5 105 11 HOH HOH B . H 3 HOH 6 106 18 HOH HOH B . H 3 HOH 7 107 21 HOH HOH B . H 3 HOH 8 108 25 HOH HOH B . H 3 HOH 9 109 26 HOH HOH B . H 3 HOH 10 110 28 HOH HOH B . H 3 HOH 11 111 29 HOH HOH B . H 3 HOH 12 112 32 HOH HOH B . H 3 HOH 13 113 37 HOH HOH B . I 3 HOH 1 101 1 HOH HOH C . I 3 HOH 2 102 2 HOH HOH C . I 3 HOH 3 103 5 HOH HOH C . I 3 HOH 4 104 12 HOH HOH C . I 3 HOH 5 105 13 HOH HOH C . I 3 HOH 6 106 16 HOH HOH C . I 3 HOH 7 107 22 HOH HOH C . I 3 HOH 8 108 23 HOH HOH C . I 3 HOH 9 109 33 HOH HOH C . I 3 HOH 10 110 34 HOH HOH C . I 3 HOH 11 111 35 HOH HOH C . I 3 HOH 12 112 38 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 25330 ? 1 MORE -113 ? 1 'SSA (A^2)' 30420 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 109.6760000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0.0000000000 -1.0000000000 0.0000000000 54.8380000000 1.0000000000 0.0000000000 0.0000000000 -54.8380000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 54.8380000000 -1.0000000000 0.0000000000 0.0000000000 54.8380000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-02-08 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 PHASER phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 3 ? A MET 1 2 1 Y 1 A TYR 4 ? A TYR 2 3 1 Y 1 A THR 5 ? A THR 3 4 1 Y 1 A ASN 6 ? A ASN 4 5 1 Y 1 A ILE 70 ? A ILE 68 6 1 Y 1 A GLU 71 ? A GLU 69 7 1 Y 1 A SER 72 ? A SER 70 8 1 Y 1 A GLU 73 ? A GLU 71 9 1 Y 1 A GLY 74 ? A GLY 72 10 1 Y 1 A LYS 75 ? A LYS 73 11 1 Y 1 A LYS 76 ? A LYS 74 12 1 Y 1 A ALA 77 ? A ALA 75 13 1 Y 1 A ALA 78 ? A ALA 76 14 1 Y 1 A ALA 79 ? A ALA 77 15 1 Y 1 A ALA 80 ? A ALA 78 16 1 Y 1 A ALA 81 ? A ALA 79 17 1 Y 1 B MET 3 ? B MET 1 18 1 Y 1 B TYR 4 ? B TYR 2 19 1 Y 1 B THR 5 ? B THR 3 20 1 Y 1 B ASN 6 ? B ASN 4 21 1 Y 1 B GLU 73 ? B GLU 71 22 1 Y 1 B GLY 74 ? B GLY 72 23 1 Y 1 B LYS 75 ? B LYS 73 24 1 Y 1 B LYS 76 ? B LYS 74 25 1 Y 1 B ALA 77 ? B ALA 75 26 1 Y 1 B ALA 78 ? B ALA 76 27 1 Y 1 B ALA 79 ? B ALA 77 28 1 Y 1 B ALA 80 ? B ALA 78 29 1 Y 1 B ALA 81 ? B ALA 79 30 1 Y 1 C MET 3 ? C MET 1 31 1 Y 1 C TYR 4 ? C TYR 2 32 1 Y 1 C THR 5 ? C THR 3 33 1 Y 1 C ASN 6 ? C ASN 4 34 1 Y 1 C GLU 73 ? C GLU 71 35 1 Y 1 C GLY 74 ? C GLY 72 36 1 Y 1 C LYS 75 ? C LYS 73 37 1 Y 1 C LYS 76 ? C LYS 74 38 1 Y 1 C ALA 77 ? C ALA 75 39 1 Y 1 C ALA 78 ? C ALA 76 40 1 Y 1 C ALA 79 ? C ALA 77 41 1 Y 1 C ALA 80 ? C ALA 78 42 1 Y 1 C ALA 81 ? C ALA 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 SER N N N N 259 SER CA C N S 260 SER C C N N 261 SER O O N N 262 SER CB C N N 263 SER OG O N N 264 SER OXT O N N 265 SER H H N N 266 SER H2 H N N 267 SER HA H N N 268 SER HB2 H N N 269 SER HB3 H N N 270 SER HG H N N 271 SER HXT H N N 272 THR N N N N 273 THR CA C N S 274 THR C C N N 275 THR O O N N 276 THR CB C N R 277 THR OG1 O N N 278 THR CG2 C N N 279 THR OXT O N N 280 THR H H N N 281 THR H2 H N N 282 THR HA H N N 283 THR HB H N N 284 THR HG1 H N N 285 THR HG21 H N N 286 THR HG22 H N N 287 THR HG23 H N N 288 THR HXT H N N 289 TRP N N N N 290 TRP CA C N S 291 TRP C C N N 292 TRP O O N N 293 TRP CB C N N 294 TRP CG C Y N 295 TRP CD1 C Y N 296 TRP CD2 C Y N 297 TRP NE1 N Y N 298 TRP CE2 C Y N 299 TRP CE3 C Y N 300 TRP CZ2 C Y N 301 TRP CZ3 C Y N 302 TRP CH2 C Y N 303 TRP OXT O N N 304 TRP H H N N 305 TRP H2 H N N 306 TRP HA H N N 307 TRP HB2 H N N 308 TRP HB3 H N N 309 TRP HD1 H N N 310 TRP HE1 H N N 311 TRP HE3 H N N 312 TRP HZ2 H N N 313 TRP HZ3 H N N 314 TRP HH2 H N N 315 TRP HXT H N N 316 TYR N N N N 317 TYR CA C N S 318 TYR C C N N 319 TYR O O N N 320 TYR CB C N N 321 TYR CG C Y N 322 TYR CD1 C Y N 323 TYR CD2 C Y N 324 TYR CE1 C Y N 325 TYR CE2 C Y N 326 TYR CZ C Y N 327 TYR OH O N N 328 TYR OXT O N N 329 TYR H H N N 330 TYR H2 H N N 331 TYR HA H N N 332 TYR HB2 H N N 333 TYR HB3 H N N 334 TYR HD1 H N N 335 TYR HD2 H N N 336 TYR HE1 H N N 337 TYR HE2 H N N 338 TYR HH H N N 339 TYR HXT H N N 340 VAL N N N N 341 VAL CA C N S 342 VAL C C N N 343 VAL O O N N 344 VAL CB C N N 345 VAL CG1 C N N 346 VAL CG2 C N N 347 VAL OXT O N N 348 VAL H H N N 349 VAL H2 H N N 350 VAL HA H N N 351 VAL HB H N N 352 VAL HG11 H N N 353 VAL HG12 H N N 354 VAL HG13 H N N 355 VAL HG21 H N N 356 VAL HG22 H N N 357 VAL HG23 H N N 358 VAL HXT H N N 359 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 SER N CA sing N N 247 SER N H sing N N 248 SER N H2 sing N N 249 SER CA C sing N N 250 SER CA CB sing N N 251 SER CA HA sing N N 252 SER C O doub N N 253 SER C OXT sing N N 254 SER CB OG sing N N 255 SER CB HB2 sing N N 256 SER CB HB3 sing N N 257 SER OG HG sing N N 258 SER OXT HXT sing N N 259 THR N CA sing N N 260 THR N H sing N N 261 THR N H2 sing N N 262 THR CA C sing N N 263 THR CA CB sing N N 264 THR CA HA sing N N 265 THR C O doub N N 266 THR C OXT sing N N 267 THR CB OG1 sing N N 268 THR CB CG2 sing N N 269 THR CB HB sing N N 270 THR OG1 HG1 sing N N 271 THR CG2 HG21 sing N N 272 THR CG2 HG22 sing N N 273 THR CG2 HG23 sing N N 274 THR OXT HXT sing N N 275 TRP N CA sing N N 276 TRP N H sing N N 277 TRP N H2 sing N N 278 TRP CA C sing N N 279 TRP CA CB sing N N 280 TRP CA HA sing N N 281 TRP C O doub N N 282 TRP C OXT sing N N 283 TRP CB CG sing N N 284 TRP CB HB2 sing N N 285 TRP CB HB3 sing N N 286 TRP CG CD1 doub Y N 287 TRP CG CD2 sing Y N 288 TRP CD1 NE1 sing Y N 289 TRP CD1 HD1 sing N N 290 TRP CD2 CE2 doub Y N 291 TRP CD2 CE3 sing Y N 292 TRP NE1 CE2 sing Y N 293 TRP NE1 HE1 sing N N 294 TRP CE2 CZ2 sing Y N 295 TRP CE3 CZ3 doub Y N 296 TRP CE3 HE3 sing N N 297 TRP CZ2 CH2 doub Y N 298 TRP CZ2 HZ2 sing N N 299 TRP CZ3 CH2 sing Y N 300 TRP CZ3 HZ3 sing N N 301 TRP CH2 HH2 sing N N 302 TRP OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 TRYPTOPHAN TRP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EXS _pdbx_initial_refinement_model.details 'PDB ENTRY 2EXS' #