HEADER HYDROLASE 18-DEC-07 2ZEY TITLE FAMILY 16 CARBOHYDRATE BINDING MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-LAYER ASSOCIATED MULTIDOMAIN ENDOGLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBM-1, UNP RESIDUES 614-756; COMPND 5 SYNONYM: CBM-1 MANNOPENTAOSE COMPLEX; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM; SOURCE 3 ORGANISM_TAXID: 44256; SOURCE 4 GENE: CELA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS FAMILY 16 CBM-1 MANNOPENTAOSE COMPLEX, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.NAIR,B.BAE REVDAT 6 01-NOV-23 2ZEY 1 HETSYN REVDAT 5 29-JUL-20 2ZEY 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2ZEY 1 VERSN REVDAT 3 24-FEB-09 2ZEY 1 VERSN REVDAT 2 20-MAY-08 2ZEY 1 JRNL REVDAT 1 04-MAR-08 2ZEY 0 JRNL AUTH B.BAE,S.OHENE-ADJEI,S.KOCHERGINSKAYA,R.I.MACKIE,M.A.SPIES, JRNL AUTH 2 I.K.CANN,S.K.NAIR JRNL TITL MOLECULAR BASIS FOR THE SELECTIVITY AND SPECIFICITY OF JRNL TITL 2 LIGAND RECOGNITION BY THE FAMILY 16 CARBOHYDRATE-BINDING JRNL TITL 3 MODULES FROM THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM MANA JRNL REF J.BIOL.CHEM. V. 283 12415 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18025086 JRNL DOI 10.1074/JBC.M706513200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2429 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3331 ; 1.416 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 7.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;37.013 ;26.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;14.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1798 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1118 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1655 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.098 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 0.518 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2292 ; 0.837 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 1.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 1.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0522 -20.3401 13.6263 REMARK 3 T TENSOR REMARK 3 T11: -0.2296 T22: -0.3160 REMARK 3 T33: -0.1905 T12: -0.0563 REMARK 3 T13: 0.0633 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.8550 L22: 4.0505 REMARK 3 L33: 4.1043 L12: 0.9945 REMARK 3 L13: 0.5923 L23: 2.2953 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.0440 S13: -0.2420 REMARK 3 S21: 0.1700 S22: 0.0137 S23: 0.1751 REMARK 3 S31: 0.3328 S32: -0.1926 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8121 -46.2567 7.6305 REMARK 3 T TENSOR REMARK 3 T11: -0.0069 T22: -0.0578 REMARK 3 T33: -0.2610 T12: -0.1842 REMARK 3 T13: -0.0169 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 4.5764 L22: 3.3175 REMARK 3 L33: 4.4305 L12: 1.4604 REMARK 3 L13: -0.4627 L23: -0.8771 REMARK 3 S TENSOR REMARK 3 S11: 0.4072 S12: -0.9645 S13: -0.2602 REMARK 3 S21: 0.8120 S22: -0.4905 S23: -0.2135 REMARK 3 S31: 0.0765 S32: 0.3232 S33: 0.0833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000027886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 41.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZEW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 100MM MEX REMARK 280 PH6.5, 10% DIOXANE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.39067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.69533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.69533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.39067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 74.09400 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 159 O HOH B 285 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 181 O HOH B 289 4655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 31 CD GLU B 31 OE1 0.128 REMARK 500 GLU B 31 CD GLU B 31 OE2 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 -3.22 77.40 REMARK 500 PHE B 12 26.81 49.71 REMARK 500 SER B 18 -7.20 76.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 11 O REMARK 620 2 GLU A 13 OE2 85.1 REMARK 620 3 ASN A 35 O 165.6 80.6 REMARK 620 4 LEU A 38 O 86.0 84.0 94.0 REMARK 620 5 ASP A 139 OD1 70.7 155.3 123.3 98.7 REMARK 620 6 ASP A 139 OD2 116.7 151.7 77.4 80.1 51.5 REMARK 620 7 HOH A 154 O 95.2 88.0 82.8 171.8 89.3 106.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 11 O REMARK 620 2 GLU B 13 OE2 74.7 REMARK 620 3 ASN B 35 O 156.6 82.1 REMARK 620 4 LEU B 38 O 78.9 79.8 93.8 REMARK 620 5 ASP B 139 OD1 78.0 152.7 125.2 96.8 REMARK 620 6 ASP B 139 OD2 123.8 154.2 77.2 86.2 50.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZEW RELATED DB: PDB REMARK 900 RELATED ID: 2ZEX RELATED DB: PDB REMARK 900 RELATED ID: 2ZEZ RELATED DB: PDB DBREF 2ZEY A 4 146 UNP Q9ZA17 Q9ZA17_9THEO 614 756 DBREF 2ZEY B 4 146 UNP Q9ZA17 Q9ZA17_9THEO 614 756 SEQADV 2ZEY GLY A 1 UNP Q9ZA17 EXPRESSION TAG SEQADV 2ZEY HIS A 2 UNP Q9ZA17 EXPRESSION TAG SEQADV 2ZEY MET A 3 UNP Q9ZA17 EXPRESSION TAG SEQADV 2ZEY GLY B 1 UNP Q9ZA17 EXPRESSION TAG SEQADV 2ZEY HIS B 2 UNP Q9ZA17 EXPRESSION TAG SEQADV 2ZEY MET B 3 UNP Q9ZA17 EXPRESSION TAG SEQRES 1 A 146 GLY HIS MET VAL ASN MET VAL SER ASN PRO GLY PHE GLU SEQRES 2 A 146 ASP GLY LEU ASP SER TRP GLN ASP TRP GLN GLN ASP MET SEQRES 3 A 146 SER ALA VAL PRO GLU ALA ALA HIS ASN GLY ALA LEU GLY SEQRES 4 A 146 LEU LYS ILE GLY GLY GLY LYS ALA ALA GLY GLY GLY GLN SEQRES 5 A 146 ASP ILE PRO LEU LYS PRO ASN THR THR TYR ILE LEU GLY SEQRES 6 A 146 ALA TRP ALA LYS PHE ASP SER LYS PRO ALA GLY THR PHE SEQRES 7 A 146 ASP VAL VAL VAL GLN TYR HIS LEU LYS ASP ALA ASN ASN SEQRES 8 A 146 THR TYR VAL GLN HIS ILE LEU ASN PHE ASN GLU THR ASP SEQRES 9 A 146 TRP THR TYR LYS GLN LEU LEU PHE THR THR PRO ASP VAL SEQRES 10 A 146 PHE GLY SER THR PRO GLN LEU ALA LEU TRP LYS GLY ASP SEQRES 11 A 146 THR SER LYS ALA ASN LEU TYR VAL ASP ASP VAL TYR LEU SEQRES 12 A 146 VAL GLU VAL SEQRES 1 B 146 GLY HIS MET VAL ASN MET VAL SER ASN PRO GLY PHE GLU SEQRES 2 B 146 ASP GLY LEU ASP SER TRP GLN ASP TRP GLN GLN ASP MET SEQRES 3 B 146 SER ALA VAL PRO GLU ALA ALA HIS ASN GLY ALA LEU GLY SEQRES 4 B 146 LEU LYS ILE GLY GLY GLY LYS ALA ALA GLY GLY GLY GLN SEQRES 5 B 146 ASP ILE PRO LEU LYS PRO ASN THR THR TYR ILE LEU GLY SEQRES 6 B 146 ALA TRP ALA LYS PHE ASP SER LYS PRO ALA GLY THR PHE SEQRES 7 B 146 ASP VAL VAL VAL GLN TYR HIS LEU LYS ASP ALA ASN ASN SEQRES 8 B 146 THR TYR VAL GLN HIS ILE LEU ASN PHE ASN GLU THR ASP SEQRES 9 B 146 TRP THR TYR LYS GLN LEU LEU PHE THR THR PRO ASP VAL SEQRES 10 B 146 PHE GLY SER THR PRO GLN LEU ALA LEU TRP LYS GLY ASP SEQRES 11 B 146 THR SER LYS ALA ASN LEU TYR VAL ASP ASP VAL TYR LEU SEQRES 12 B 146 VAL GLU VAL HET BMA C 1 12 HET BMA C 2 11 HET BMA C 3 11 HET BMA C 4 11 HET BMA C 5 11 HET MAN D 1 12 HET BMA D 2 11 HET BMA D 3 11 HET BMA D 4 11 HET BMA D 5 11 HET CA A 152 1 HET CA B 152 1 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 BMA 9(C6 H12 O6) FORMUL 4 MAN C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *229(H2 O) HELIX 1 1 PRO A 30 ALA A 33 5 4 HELIX 2 2 PRO B 30 ALA B 33 5 4 SHEET 1 A10 GLN A 20 ASP A 21 0 SHEET 2 A10 ALA A 48 ASP A 53 -1 O GLY A 51 N GLN A 20 SHEET 3 A10 GLN A 123 LYS A 128 -1 O LEU A 126 N GLY A 50 SHEET 4 A10 PHE A 78 HIS A 85 -1 N ASP A 79 O TRP A 127 SHEET 5 A10 TYR A 93 PHE A 100 -1 O LEU A 98 N VAL A 80 SHEET 6 A10 TYR B 93 PHE B 100 -1 O GLN B 95 N TYR A 93 SHEET 7 A10 PHE B 78 HIS B 85 -1 N VAL B 80 O LEU B 98 SHEET 8 A10 GLN B 123 LYS B 128 -1 O TRP B 127 N ASP B 79 SHEET 9 A10 ALA B 48 ASP B 53 -1 N GLY B 50 O LEU B 126 SHEET 10 A10 GLN B 20 ASP B 21 -1 N GLN B 20 O GLY B 51 SHEET 1 B 5 MET A 26 VAL A 29 0 SHEET 2 B 5 GLY A 39 ILE A 42 -1 O LYS A 41 N SER A 27 SHEET 3 B 5 LEU A 136 GLU A 145 -1 O LEU A 136 N ILE A 42 SHEET 4 B 5 THR A 61 PHE A 70 -1 N GLY A 65 O TYR A 142 SHEET 5 B 5 THR A 106 THR A 113 -1 O PHE A 112 N TYR A 62 SHEET 1 C 5 MET B 26 VAL B 29 0 SHEET 2 C 5 GLY B 39 ILE B 42 -1 O LYS B 41 N SER B 27 SHEET 3 C 5 LEU B 136 GLU B 145 -1 O VAL B 138 N LEU B 40 SHEET 4 C 5 THR B 61 PHE B 70 -1 N GLY B 65 O TYR B 142 SHEET 5 C 5 THR B 106 THR B 113 -1 O PHE B 112 N TYR B 62 LINK O4 BMA C 1 C1 BMA C 2 1555 1555 1.44 LINK O4 BMA C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 BMA C 3 C1 BMA C 4 1555 1555 1.44 LINK O4 BMA C 4 C1 BMA C 5 1555 1555 1.44 LINK O4 MAN D 1 C1 BMA D 2 1555 1555 1.45 LINK O4 BMA D 2 C1 BMA D 3 1555 1555 1.45 LINK O4 BMA D 3 C1 BMA D 4 1555 1555 1.44 LINK O4 BMA D 4 C1 BMA D 5 1555 1555 1.44 LINK O GLY A 11 CA CA A 152 1555 1555 2.34 LINK OE2 GLU A 13 CA CA A 152 1555 1555 2.42 LINK O ASN A 35 CA CA A 152 1555 1555 2.46 LINK O LEU A 38 CA CA A 152 1555 1555 2.25 LINK OD1 ASP A 139 CA CA A 152 1555 1555 2.56 LINK OD2 ASP A 139 CA CA A 152 1555 1555 2.46 LINK CA CA A 152 O HOH A 154 1555 1555 2.31 LINK O GLY B 11 CA CA B 152 1555 1555 2.53 LINK OE2 GLU B 13 CA CA B 152 1555 1555 2.42 LINK O ASN B 35 CA CA B 152 1555 1555 2.46 LINK O LEU B 38 CA CA B 152 1555 1555 2.40 LINK OD1 ASP B 139 CA CA B 152 1555 1555 2.63 LINK OD2 ASP B 139 CA CA B 152 1555 1555 2.53 CRYST1 74.094 74.094 116.086 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013496 0.007792 0.000000 0.00000 SCALE2 0.000000 0.015584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008614 0.00000