HEADER DNA BINDING PROTEIN 16-JAN-08 2ZFZ TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN HEXAMER OF ARGR FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE REPRESSOR; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN: RESIDUES 92-170; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 GENE: ARGR, AHRC, RV1657, MT1695, MTCY06H11.22; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PDEST-15; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGST-1657 KEYWDS L-ARGININE REPRESSOR, DNA BINDING PROTEIN, CORE, OLIGOMERIZATION KEYWDS 2 DOMAIN, ALPHA/BETA TOPOLOGY, STRUCTURAL GENOMICS, TB STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, TBSGC, AMINO-ACID BIOSYNTHESIS, ARGININE KEYWDS 4 BIOSYNTHESIS, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 5 PSI-2, PROTEIN STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,G.J.LU,M.N.G.JAMES,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 6 30-AUG-23 2ZFZ 1 REMARK REVDAT 5 11-OCT-17 2ZFZ 1 REMARK REVDAT 4 13-JUL-11 2ZFZ 1 VERSN REVDAT 3 24-FEB-09 2ZFZ 1 VERSN REVDAT 2 02-SEP-08 2ZFZ 1 JRNL REVDAT 1 12-FEB-08 2ZFZ 0 JRNL AUTH L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,G.J.LU,M.N.JAMES JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE ARGININE REPRESSOR JRNL TITL 2 PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 950 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18703843 JRNL DOI 10.1107/S0907444908021513 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : 2.05000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3510 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4774 ; 1.570 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 6.072 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;36.697 ;22.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;14.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2648 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1703 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2412 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2416 ; 0.946 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3732 ; 1.372 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1189 ; 2.615 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1042 ; 4.097 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000027923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 61.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 17.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1B4B, POLY-ALANINE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1 M TRIS-HCL, 0.1 M REMARK 280 GUANIDINE-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.83650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.54950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.97350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.54950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.83650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.97350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE ASYMMETRIC UNIT CONTAINS ONE HEXAMER REMARK 300 THAT IS A DIMER OF TRIMERS. EITHER HEXAMER OR TRIMER MIGHT BE THE REMARK 300 BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY B 92 REMARK 465 GLY C 92 REMARK 465 GLY E 92 REMARK 465 GLY F 92 REMARK 465 GLY F 93 REMARK 465 THR F 94 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG E 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG F 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAI A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAI E 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1657 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3BUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN HEXAMER OF ARGR FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS DBREF 2ZFZ A 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 DBREF 2ZFZ B 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 DBREF 2ZFZ C 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 DBREF 2ZFZ D 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 DBREF 2ZFZ E 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 DBREF 2ZFZ F 92 170 UNP P0A4Y8 ARGR_MYCTU 92 170 SEQRES 1 A 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 A 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 A 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 A 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 A 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 A 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 A 79 ARG SEQRES 1 B 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 B 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 B 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 B 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 B 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 B 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 B 79 ARG SEQRES 1 C 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 C 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 C 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 C 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 C 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 C 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 C 79 ARG SEQRES 1 D 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 D 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 D 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 D 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 D 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 D 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 D 79 ARG SEQRES 1 E 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 E 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 E 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 E 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 E 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 E 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 E 79 ARG SEQRES 1 F 79 GLY GLY THR ASP ARG MET ALA ARG LEU LEU GLY GLU LEU SEQRES 2 F 79 LEU VAL SER THR ASP ASP SER GLY ASN LEU ALA VAL LEU SEQRES 3 F 79 ARG THR PRO PRO GLY ALA ALA HIS TYR LEU ALA SER ALA SEQRES 4 F 79 ILE ASP ARG ALA ALA LEU PRO GLN VAL VAL GLY THR ILE SEQRES 5 F 79 ALA GLY ASP ASP THR ILE LEU VAL VAL ALA ARG GLU PRO SEQRES 6 F 79 THR THR GLY ALA GLN LEU ALA GLY MET PHE GLU ASN LEU SEQRES 7 F 79 ARG HET ARG A 300 12 HET GAI A 400 4 HET ARG B 300 12 HET ARG C 300 12 HET ARG D 300 12 HET ARG E 300 12 HET GAI E 400 4 HET ARG F 300 12 HETNAM ARG ARGININE HETNAM GAI GUANIDINE FORMUL 7 ARG 6(C6 H15 N4 O2 1+) FORMUL 8 GAI 2(C H5 N3) FORMUL 15 HOH *407(H2 O) HELIX 1 1 THR A 94 LEU A 105 1 12 HELIX 2 2 ALA A 123 ALA A 135 1 13 HELIX 3 3 THR A 158 ARG A 170 1 13 HELIX 4 4 GLY B 93 LEU B 105 1 13 HELIX 5 5 ALA B 123 ALA B 135 1 13 HELIX 6 6 THR B 158 ASN B 168 1 11 HELIX 7 7 GLY C 93 LEU C 105 1 13 HELIX 8 8 ALA C 123 ALA C 135 1 13 HELIX 9 9 THR C 158 ARG C 170 1 13 HELIX 10 10 GLY D 92 LEU D 105 1 14 HELIX 11 11 ALA D 123 ALA D 135 1 13 HELIX 12 12 THR D 158 LEU D 169 1 12 HELIX 13 13 GLY E 93 LEU E 105 1 13 HELIX 14 14 ALA E 123 ALA E 135 1 13 HELIX 15 15 THR E 158 ARG E 170 1 13 HELIX 16 16 ARG F 96 LEU F 105 1 10 HELIX 17 17 ALA F 123 ALA F 135 1 13 HELIX 18 18 THR F 158 LEU F 169 1 12 SHEET 1 A 4 SER A 107 SER A 111 0 SHEET 2 A 4 LEU A 114 ARG A 118 -1 O VAL A 116 N ASP A 109 SHEET 3 A 4 THR A 148 ALA A 153 -1 O VAL A 151 N ALA A 115 SHEET 4 A 4 VAL A 139 ALA A 144 -1 N VAL A 140 O VAL A 152 SHEET 1 B 4 SER B 107 SER B 111 0 SHEET 2 B 4 LEU B 114 ARG B 118 -1 O VAL B 116 N ASP B 109 SHEET 3 B 4 THR B 148 ALA B 153 -1 O VAL B 151 N ALA B 115 SHEET 4 B 4 VAL B 139 ALA B 144 -1 N VAL B 140 O VAL B 152 SHEET 1 C 4 SER C 107 SER C 111 0 SHEET 2 C 4 LEU C 114 ARG C 118 -1 O ARG C 118 N SER C 107 SHEET 3 C 4 THR C 148 ALA C 153 -1 O VAL C 151 N ALA C 115 SHEET 4 C 4 VAL C 139 ALA C 144 -1 N VAL C 140 O VAL C 152 SHEET 1 D 4 SER D 107 SER D 111 0 SHEET 2 D 4 LEU D 114 ARG D 118 -1 O VAL D 116 N ASP D 109 SHEET 3 D 4 THR D 148 ALA D 153 -1 O VAL D 151 N ALA D 115 SHEET 4 D 4 VAL D 139 ALA D 144 -1 N VAL D 140 O VAL D 152 SHEET 1 E 4 SER E 107 SER E 111 0 SHEET 2 E 4 LEU E 114 ARG E 118 -1 O ARG E 118 N SER E 107 SHEET 3 E 4 THR E 148 ALA E 153 -1 O VAL E 151 N ALA E 115 SHEET 4 E 4 VAL E 139 ALA E 144 -1 N GLY E 141 O VAL E 152 SHEET 1 F 4 SER F 107 SER F 111 0 SHEET 2 F 4 LEU F 114 ARG F 118 -1 O VAL F 116 N ASP F 109 SHEET 3 F 4 THR F 148 ALA F 153 -1 O VAL F 151 N ALA F 115 SHEET 4 F 4 VAL F 139 ALA F 144 -1 N VAL F 140 O VAL F 152 CISPEP 1 GLU A 155 PRO A 156 0 0.42 CISPEP 2 GLU B 155 PRO B 156 0 11.29 CISPEP 3 GLU C 155 PRO C 156 0 4.14 CISPEP 4 GLU D 155 PRO D 156 0 5.39 CISPEP 5 GLU E 155 PRO E 156 0 7.67 CISPEP 6 GLU F 155 PRO F 156 0 4.93 SITE 1 AC1 15 HIS A 125 ALA A 128 ASP A 132 THR A 142 SITE 2 AC1 15 ILE A 143 ALA A 144 HOH A 508 HOH A 512 SITE 3 AC1 15 GLY C 145 ASP C 146 ASP C 147 THR C 148 SITE 4 AC1 15 PRO F 121 GLY F 122 ASP F 146 SITE 1 AC2 14 GLY A 145 ASP A 146 ASP A 147 THR A 148 SITE 2 AC2 14 HIS B 125 ALA B 128 ASP B 132 THR B 142 SITE 3 AC2 14 ILE B 143 ALA B 144 HOH B 534 HOH B 547 SITE 4 AC2 14 GLY E 122 ASP E 146 SITE 1 AC3 16 ARG B 118 GLY B 145 ASP B 146 ASP B 147 SITE 2 AC3 16 THR B 148 HIS C 125 ALA C 128 ASP C 132 SITE 3 AC3 16 THR C 142 ILE C 143 ALA C 144 HOH C 507 SITE 4 AC3 16 HOH C 508 PRO D 121 GLY D 122 ASP D 146 SITE 1 AC4 14 GLY C 122 ASP C 146 HIS D 125 ALA D 128 SITE 2 AC4 14 ASP D 132 THR D 142 ILE D 143 ALA D 144 SITE 3 AC4 14 HOH D 568 HOH D 579 GLY F 145 ASP F 146 SITE 4 AC4 14 ASP F 147 THR F 148 SITE 1 AC5 14 PRO B 121 ASP B 146 GLY D 145 ASP D 146 SITE 2 AC5 14 ASP D 147 THR D 148 HIS E 125 ALA E 128 SITE 3 AC5 14 ASP E 132 THR E 142 ILE E 143 ALA E 144 SITE 4 AC5 14 HOH E 583 HOH E 586 SITE 1 AC6 14 PRO A 121 ASP A 146 GLY E 145 ASP E 146 SITE 2 AC6 14 ASP E 147 THR E 148 HIS F 125 ALA F 128 SITE 3 AC6 14 ASP F 132 THR F 142 ILE F 143 ALA F 144 SITE 4 AC6 14 HOH F 507 HOH F 512 SITE 1 AC7 6 GLY A 164 GLU A 167 ASN A 168 GLY E 102 SITE 2 AC7 6 GLU E 103 LEU E 105 SITE 1 AC8 5 LEU A 105 VAL A 106 GLU A 167 ARG A 170 SITE 2 AC8 5 HOH A 551 CRYST1 57.673 75.947 107.099 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009337 0.00000