HEADER HYDROLASE 29-FEB-08 2ZJ2 TITLE ARCHAEAL DNA HELICASE HJM APO STATE IN FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SKI2-TYPE HELICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA HELICASE; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS RECA FOLD, ATP-BINDING, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.OYAMA,H.OKA,R.FUJIKANE,Y.ISHINO,K.MORIKAWA REVDAT 2 13-MAR-24 2ZJ2 1 REMARK REVDAT 1 10-FEB-09 2ZJ2 0 JRNL AUTH T.OYAMA,H.OKA,K.MAYANAGI,T.SHIRAI,K.MATOBA,R.FUJIKANE, JRNL AUTH 2 Y.ISHINO,K.MORIKAWA JRNL TITL ATOMIC STRUCTURES AND FUNCTIONAL IMPLICATIONS OF THE JRNL TITL 2 ARCHAEAL RECQ-LIKE HELICASE HJM JRNL REF BMC STRUCT.BIOL. V. 9 2 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19159486 JRNL DOI 10.1186/1472-6807-9-2 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 348188.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 29821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4353 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 217 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.66000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : 5.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 16.530; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 15.860; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 19.240; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 17.990; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 51.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SO4.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SO4.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000028034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : K-B MIRROR REMARK 200 OPTICS : SI REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SUFLATE, 0.1M CITRATE, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.63450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.72050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.63450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.72050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.77198 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.71077 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 901 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 332 REMARK 465 GLY A 333 REMARK 465 ILE A 334 REMARK 465 ASN A 335 REMARK 465 SER A 557 REMARK 465 GLY A 558 REMARK 465 TYR A 559 REMARK 465 ASP A 560 REMARK 465 PRO A 561 REMARK 465 TYR A 562 REMARK 465 LEU A 563 REMARK 465 SER A 665 REMARK 465 GLY A 666 REMARK 465 PHE A 667 REMARK 465 ARG A 668 REMARK 465 SER A 669 REMARK 465 ILE A 670 REMARK 465 GLU A 671 REMARK 465 ASP A 672 REMARK 465 ILE A 673 REMARK 465 SER A 674 REMARK 465 GLN A 675 REMARK 465 ALA A 676 REMARK 465 ARG A 677 REMARK 465 PRO A 678 REMARK 465 GLU A 679 REMARK 465 GLU A 680 REMARK 465 LEU A 681 REMARK 465 LEU A 682 REMARK 465 LYS A 683 REMARK 465 ILE A 684 REMARK 465 GLU A 685 REMARK 465 GLY A 686 REMARK 465 ILE A 687 REMARK 465 GLY A 688 REMARK 465 VAL A 689 REMARK 465 LYS A 690 REMARK 465 THR A 691 REMARK 465 VAL A 692 REMARK 465 GLU A 693 REMARK 465 ALA A 694 REMARK 465 ILE A 695 REMARK 465 PHE A 696 REMARK 465 LYS A 697 REMARK 465 PHE A 698 REMARK 465 LEU A 699 REMARK 465 GLY A 700 REMARK 465 LYS A 701 REMARK 465 ASN A 702 REMARK 465 VAL A 703 REMARK 465 LYS A 704 REMARK 465 ILE A 705 REMARK 465 SER A 706 REMARK 465 GLU A 707 REMARK 465 LYS A 708 REMARK 465 PRO A 709 REMARK 465 ARG A 710 REMARK 465 LYS A 711 REMARK 465 SER A 712 REMARK 465 THR A 713 REMARK 465 LEU A 714 REMARK 465 ASP A 715 REMARK 465 TYR A 716 REMARK 465 PHE A 717 REMARK 465 LEU A 718 REMARK 465 LYS A 719 REMARK 465 SER A 720 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 350 OG REMARK 470 PHE A 352 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 ARG A 533 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 536 CG CD OE1 OE2 REMARK 470 ASP A 552 CG OD1 OD2 REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 ARG A 565 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 650 CG CD OE1 NE2 REMARK 470 ARG A 658 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 354 CE MET A 354 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 598 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 21.65 -153.62 REMARK 500 LYS A 78 58.59 -66.45 REMARK 500 ALA A 79 -26.11 -157.56 REMARK 500 ASP A 90 -7.58 -57.18 REMARK 500 ASP A 106 57.20 -92.96 REMARK 500 ASP A 154 -83.38 -65.78 REMARK 500 GLN A 210 74.74 44.68 REMARK 500 LYS A 237 -17.67 64.51 REMARK 500 SER A 263 24.91 -75.14 REMARK 500 THR A 266 160.53 -48.89 REMARK 500 ALA A 290 -70.71 -62.58 REMARK 500 LEU A 330 32.16 86.79 REMARK 500 SER A 386 61.60 -157.46 REMARK 500 ASN A 410 104.56 -48.58 REMARK 500 ASP A 448 97.42 -35.36 REMARK 500 ASP A 475 32.76 75.36 REMARK 500 TYR A 490 -0.09 69.40 REMARK 500 ASP A 552 -84.60 -52.14 REMARK 500 TYR A 555 -109.52 -67.90 REMARK 500 ALA A 623 54.25 -65.66 REMARK 500 GLU A 644 12.28 -60.77 REMARK 500 LEU A 648 3.39 -53.65 REMARK 500 LEU A 651 149.19 -12.73 REMARK 500 LEU A 653 137.24 170.11 REMARK 500 VAL A 654 -84.55 -170.57 REMARK 500 ARG A 657 -103.05 -41.12 REMARK 500 TYR A 663 -11.90 -45.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZJ5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ADP REMARK 900 RELATED ID: 2ZJ8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ANOTHER CRYSTAL FORM REMARK 900 RELATED ID: 2ZJA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMPPCP DBREF 2ZJ2 A 1 720 UNP O73946 HELS_PYRFU 1 720 SEQRES 1 A 720 MET ARG VAL ASP GLU LEU ARG VAL ASP GLU ARG ILE LYS SEQRES 2 A 720 SER THR LEU LYS GLU ARG GLY ILE GLU SER PHE TYR PRO SEQRES 3 A 720 PRO GLN ALA GLU ALA LEU LYS SER GLY ILE LEU GLU GLY SEQRES 4 A 720 LYS ASN ALA LEU ILE SER ILE PRO THR ALA SER GLY LYS SEQRES 5 A 720 THR LEU ILE ALA GLU ILE ALA MET VAL HIS ARG ILE LEU SEQRES 6 A 720 THR GLN GLY GLY LYS ALA VAL TYR ILE VAL PRO LEU LYS SEQRES 7 A 720 ALA LEU ALA GLU GLU LYS PHE GLN GLU PHE GLN ASP TRP SEQRES 8 A 720 GLU LYS ILE GLY LEU ARG VAL ALA MET ALA THR GLY ASP SEQRES 9 A 720 TYR ASP SER LYS ASP GLU TRP LEU GLY LYS TYR ASP ILE SEQRES 10 A 720 ILE ILE ALA THR ALA GLU LYS PHE ASP SER LEU LEU ARG SEQRES 11 A 720 HIS GLY SER SER TRP ILE LYS ASP VAL LYS ILE LEU VAL SEQRES 12 A 720 ALA ASP GLU ILE HIS LEU ILE GLY SER ARG ASP ARG GLY SEQRES 13 A 720 ALA THR LEU GLU VAL ILE LEU ALA HIS MET LEU GLY LYS SEQRES 14 A 720 ALA GLN ILE ILE GLY LEU SER ALA THR ILE GLY ASN PRO SEQRES 15 A 720 GLU GLU LEU ALA GLU TRP LEU ASN ALA GLU LEU ILE VAL SEQRES 16 A 720 SER ASP TRP ARG PRO VAL LYS LEU ARG ARG GLY VAL PHE SEQRES 17 A 720 TYR GLN GLY PHE VAL THR TRP GLU ASP GLY SER ILE ASP SEQRES 18 A 720 ARG PHE SER SER TRP GLU GLU LEU VAL TYR ASP ALA ILE SEQRES 19 A 720 ARG LYS LYS LYS GLY ALA LEU ILE PHE VAL ASN MET ARG SEQRES 20 A 720 ARG LYS ALA GLU ARG VAL ALA LEU GLU LEU SER LYS LYS SEQRES 21 A 720 VAL LYS SER LEU LEU THR LYS PRO GLU ILE ARG ALA LEU SEQRES 22 A 720 ASN GLU LEU ALA ASP SER LEU GLU GLU ASN PRO THR ASN SEQRES 23 A 720 GLU LYS LEU ALA LYS ALA ILE ARG GLY GLY VAL ALA PHE SEQRES 24 A 720 HIS HIS ALA GLY LEU GLY ARG ASP GLU ARG VAL LEU VAL SEQRES 25 A 720 GLU GLU ASN PHE ARG LYS GLY ILE ILE LYS ALA VAL VAL SEQRES 26 A 720 ALA THR PRO THR LEU SER ALA GLY ILE ASN THR PRO ALA SEQRES 27 A 720 PHE ARG VAL ILE ILE ARG ASP ILE TRP ARG TYR SER ASP SEQRES 28 A 720 PHE GLY MET GLU ARG ILE PRO ILE ILE GLU VAL HIS GLN SEQRES 29 A 720 MET LEU GLY ARG ALA GLY ARG PRO LYS TYR ASP GLU VAL SEQRES 30 A 720 GLY GLU GLY ILE ILE VAL SER THR SER ASP ASP PRO ARG SEQRES 31 A 720 GLU VAL MET ASN HIS TYR ILE PHE GLY LYS PRO GLU LYS SEQRES 32 A 720 LEU PHE SER GLN LEU SER ASN GLU SER ASN LEU ARG SER SEQRES 33 A 720 GLN VAL LEU ALA LEU ILE ALA THR PHE GLY TYR SER THR SEQRES 34 A 720 VAL GLU GLU ILE LEU LYS PHE ILE SER ASN THR PHE TYR SEQRES 35 A 720 ALA TYR GLN ARG LYS ASP THR TYR SER LEU GLU GLU LYS SEQRES 36 A 720 ILE ARG ASN ILE LEU TYR PHE LEU LEU GLU ASN GLU PHE SEQRES 37 A 720 ILE GLU ILE SER LEU GLU ASP LYS ILE ARG PRO LEU SER SEQRES 38 A 720 LEU GLY ILE ARG THR ALA LYS LEU TYR ILE ASP PRO TYR SEQRES 39 A 720 THR ALA LYS MET PHE LYS ASP LYS MET GLU GLU VAL VAL SEQRES 40 A 720 LYS ASP PRO ASN PRO ILE GLY ILE PHE HIS LEU ILE SER SEQRES 41 A 720 LEU THR PRO ASP ILE THR PRO PHE ASN TYR SER LYS ARG SEQRES 42 A 720 GLU PHE GLU ARG LEU GLU GLU GLU TYR TYR GLU PHE LYS SEQRES 43 A 720 ASP ARG LEU TYR PHE ASP ASP PRO TYR ILE SER GLY TYR SEQRES 44 A 720 ASP PRO TYR LEU GLU ARG LYS PHE PHE ARG ALA PHE LYS SEQRES 45 A 720 THR ALA LEU VAL LEU LEU ALA TRP ILE ASN GLU VAL PRO SEQRES 46 A 720 GLU GLY GLU ILE VAL GLU LYS TYR SER VAL GLU PRO GLY SEQRES 47 A 720 ASP ILE TYR ARG ILE VAL GLU THR ALA GLU TRP LEU VAL SEQRES 48 A 720 TYR SER LEU LYS GLU ILE ALA LYS VAL LEU GLY ALA TYR SEQRES 49 A 720 GLU ILE VAL ASP TYR LEU GLU THR LEU ARG VAL ARG VAL SEQRES 50 A 720 LYS TYR GLY ILE ARG GLU GLU LEU ILE PRO LEU MET GLN SEQRES 51 A 720 LEU PRO LEU VAL GLY ARG ARG ARG ALA ARG ALA LEU TYR SEQRES 52 A 720 ASN SER GLY PHE ARG SER ILE GLU ASP ILE SER GLN ALA SEQRES 53 A 720 ARG PRO GLU GLU LEU LEU LYS ILE GLU GLY ILE GLY VAL SEQRES 54 A 720 LYS THR VAL GLU ALA ILE PHE LYS PHE LEU GLY LYS ASN SEQRES 55 A 720 VAL LYS ILE SER GLU LYS PRO ARG LYS SER THR LEU ASP SEQRES 56 A 720 TYR PHE LEU LYS SER HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *90(H2 O) HELIX 1 1 ARG A 2 LEU A 6 5 5 HELIX 2 2 ASP A 9 ARG A 19 1 11 HELIX 3 3 TYR A 25 LYS A 33 1 9 HELIX 4 4 GLY A 35 GLY A 39 5 5 HELIX 5 5 PRO A 47 SER A 50 5 4 HELIX 6 6 GLY A 51 GLY A 68 1 18 HELIX 7 7 LEU A 80 PHE A 88 1 9 HELIX 8 8 GLN A 89 GLY A 95 5 7 HELIX 9 9 ASP A 109 TYR A 115 5 7 HELIX 10 10 ALA A 122 GLY A 132 1 11 HELIX 11 11 SER A 133 LYS A 137 5 5 HELIX 12 12 ILE A 147 SER A 152 5 6 HELIX 13 13 ARG A 155 LEU A 167 1 13 HELIX 14 14 ASN A 181 LEU A 189 1 9 HELIX 15 15 TRP A 226 LYS A 236 1 11 HELIX 16 16 MET A 246 LYS A 262 1 17 HELIX 17 17 SER A 263 LEU A 265 5 3 HELIX 18 18 THR A 266 LEU A 280 1 15 HELIX 19 19 ASN A 283 GLY A 295 1 13 HELIX 20 20 GLY A 305 LYS A 318 1 14 HELIX 21 21 PRO A 358 GLY A 367 1 10 HELIX 22 22 ASP A 388 ILE A 397 1 10 HELIX 23 23 ASN A 410 PHE A 425 1 16 HELIX 24 24 THR A 429 ASN A 439 1 11 HELIX 25 25 THR A 440 GLN A 445 1 6 HELIX 26 26 ASP A 448 ASN A 466 1 19 HELIX 27 27 LEU A 480 TYR A 490 1 11 HELIX 28 28 ASP A 492 ASP A 509 1 18 HELIX 29 29 ASN A 511 SER A 520 1 10 HELIX 30 30 GLU A 534 LYS A 546 1 13 HELIX 31 31 GLU A 564 ASN A 582 1 19 HELIX 32 32 PRO A 585 SER A 594 1 10 HELIX 33 33 GLY A 598 LEU A 621 1 24 HELIX 34 34 GLY A 622 GLU A 625 5 4 HELIX 35 35 ILE A 626 GLY A 640 1 15 HELIX 36 36 ARG A 642 GLN A 650 5 9 HELIX 37 37 GLY A 655 TYR A 663 1 9 SHEET 1 A 7 VAL A 98 ALA A 101 0 SHEET 2 A 7 ILE A 117 THR A 121 1 O ILE A 117 N ALA A 99 SHEET 3 A 7 LYS A 70 VAL A 75 1 N TYR A 73 O ILE A 118 SHEET 4 A 7 VAL A 139 ASP A 145 1 O VAL A 143 N VAL A 72 SHEET 5 A 7 GLN A 171 SER A 176 1 O GLN A 171 N LEU A 142 SHEET 6 A 7 ASN A 41 SER A 45 1 N ILE A 44 O GLY A 174 SHEET 7 A 7 ALA A 191 VAL A 195 1 O GLU A 192 N LEU A 43 SHEET 1 B 8 ILE A 220 ARG A 222 0 SHEET 2 B 8 PHE A 212 TRP A 215 -1 N VAL A 213 O ASP A 221 SHEET 3 B 8 LEU A 203 TYR A 209 -1 N TYR A 209 O PHE A 212 SHEET 4 B 8 GLY A 378 VAL A 383 1 O GLY A 378 N ARG A 204 SHEET 5 B 8 ARG A 340 ILE A 343 1 N VAL A 341 O ILE A 381 SHEET 6 B 8 ALA A 240 PHE A 243 1 N PHE A 243 O ILE A 342 SHEET 7 B 8 ALA A 323 ALA A 326 1 O ALA A 326 N ILE A 242 SHEET 8 B 8 VAL A 297 HIS A 300 1 N ALA A 298 O VAL A 325 SHEET 1 C 2 TRP A 347 SER A 350 0 SHEET 2 C 2 GLY A 353 ARG A 356 -1 O GLU A 355 N ARG A 348 SHEET 1 D 2 ILE A 469 GLU A 470 0 SHEET 2 D 2 ARG A 478 PRO A 479 -1 O ARG A 478 N GLU A 470 SITE 1 AC1 3 LYS A 249 ARG A 344 THR A 385 SITE 1 AC2 3 MET A 246 ARG A 247 ARG A 248 SITE 1 AC3 3 ARG A 634 LYS A 638 TYR A 639 SITE 1 AC4 3 LYS A 108 HIS A 131 LYS A 488 SITE 1 AC5 4 ARG A 247 ALA A 302 THR A 327 THR A 329 CRYST1 117.269 83.441 95.019 90.00 120.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008527 0.000000 0.005061 0.00000 SCALE2 0.000000 0.011985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012238 0.00000