HEADER ISOMERASE 10-MAR-08 2ZJT TITLE CRYSTAL STRUCTURE OF DNA GYRASE B' DOMAIN SHEDS LIGHTS ON THE TITLE 2 MECHANISM FOR T-SEGMENT NAVIGATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GYRB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS, B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20B(+) KEYWDS DNA GYRASE, GYRB-CTD, TOPRIM, TAIL, DNA TOPOISOMERASE II, G-SEGMENT, KEYWDS 2 T-SEGMENT, ATP-BINDING, NUCLEOTIDE-BINDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.FU,D.Y.ZHU,Y.L.HU,D.C.WANG REVDAT 5 13-MAR-24 2ZJT 1 SEQADV REVDAT 4 12-FEB-14 2ZJT 1 JRNL VERSN REVDAT 3 22-SEP-09 2ZJT 1 JRNL REVDAT 2 24-MAR-09 2ZJT 1 JRNL REVDAT 1 10-MAR-09 2ZJT 0 JRNL AUTH G.S.FU,J.J.WU,W.LIU,D.Y.ZHU,Y.L.HU,J.DENG,X.E.ZHANG,L.J.BI, JRNL AUTH 2 D.C.WANG JRNL TITL CRYSTAL STRUCTURE OF DNA GYRASE B' DOMAIN SHEDS LIGHTS ON JRNL TITL 2 THE MECHANISM FOR T-SEGMENT NAVIGATION JRNL REF NUCLEIC ACIDS RES. V. 37 5908 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19596812 JRNL DOI 10.1093/NAR/GKP586 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1177400.520 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 12741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 654 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1731 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 96 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 2.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 41.23 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ZJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000028061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-06; 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 93; 93 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : PHOTON FACTORY; ROTATING ANODE REMARK 200 BEAMLINE : BL-5A; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947, 1.0000; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU RAXIS REMARK 200 IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 50MM SODIUM ACETATE, REMARK 280 0.2M AMMONIUM SULFATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.41550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.28950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.38150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.28950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.41550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.38150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 481 REMARK 465 THR A 482 REMARK 465 PRO A 483 REMARK 465 TYR A 484 REMARK 465 ALA A 485 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 GLY A 503 REMARK 465 GLY A 504 REMARK 465 SER A 505 REMARK 465 ALA A 506 REMARK 465 LYS A 507 REMARK 465 SER A 508 REMARK 465 GLY A 509 REMARK 465 ARG A 510 REMARK 465 ASP A 511 REMARK 465 SER A 512 REMARK 465 ILE A 524 REMARK 465 ILE A 525 REMARK 465 ASN A 526 REMARK 465 VAL A 527 REMARK 465 GLU A 528 REMARK 465 LYS A 529 REMARK 465 ALA A 530 REMARK 465 ARG A 531 REMARK 465 ILE A 532 REMARK 465 GLY A 692 REMARK 465 GLU A 693 REMARK 465 ASP A 694 REMARK 465 VAL A 695 REMARK 465 ASP A 696 REMARK 465 ALA A 697 REMARK 465 ARG A 698 REMARK 465 ARG A 699 REMARK 465 SER A 700 REMARK 465 PHE A 701 REMARK 465 ILE A 702 REMARK 465 THR A 703 REMARK 465 ARG A 704 REMARK 465 ASN A 705 REMARK 465 ALA A 706 REMARK 465 LYS A 707 REMARK 465 ASP A 708 REMARK 465 VAL A 709 REMARK 465 ARG A 710 REMARK 465 PHE A 711 REMARK 465 LEU A 712 REMARK 465 ASP A 713 REMARK 465 VAL A 714 REMARK 465 LYS A 715 REMARK 465 LEU A 716 REMARK 465 ALA A 717 REMARK 465 ALA A 718 REMARK 465 ALA A 719 REMARK 465 LEU A 720 REMARK 465 GLU A 721 REMARK 465 HIS A 722 REMARK 465 HIS A 723 REMARK 465 HIS A 724 REMARK 465 HIS A 725 REMARK 465 HIS A 726 REMARK 465 HIS A 727 REMARK 465 MET B 481 REMARK 465 THR B 482 REMARK 465 PRO B 483 REMARK 465 TYR B 484 REMARK 465 ALA B 485 REMARK 465 SER B 501 REMARK 465 ALA B 502 REMARK 465 GLY B 503 REMARK 465 GLY B 504 REMARK 465 SER B 505 REMARK 465 ALA B 506 REMARK 465 LYS B 507 REMARK 465 SER B 508 REMARK 465 GLY B 509 REMARK 465 ARG B 510 REMARK 465 ASP B 511 REMARK 465 SER B 512 REMARK 465 ILE B 524 REMARK 465 ILE B 525 REMARK 465 ASN B 526 REMARK 465 VAL B 527 REMARK 465 GLU B 528 REMARK 465 LYS B 529 REMARK 465 ALA B 530 REMARK 465 ARG B 531 REMARK 465 ILE B 532 REMARK 465 GLY B 692 REMARK 465 GLU B 693 REMARK 465 ASP B 694 REMARK 465 VAL B 695 REMARK 465 ASP B 696 REMARK 465 ALA B 697 REMARK 465 ARG B 698 REMARK 465 ARG B 699 REMARK 465 SER B 700 REMARK 465 PHE B 701 REMARK 465 ILE B 702 REMARK 465 THR B 703 REMARK 465 ARG B 704 REMARK 465 ASN B 705 REMARK 465 ALA B 706 REMARK 465 LYS B 707 REMARK 465 ASP B 708 REMARK 465 VAL B 709 REMARK 465 ARG B 710 REMARK 465 PHE B 711 REMARK 465 LEU B 712 REMARK 465 ASP B 713 REMARK 465 VAL B 714 REMARK 465 LYS B 715 REMARK 465 LEU B 716 REMARK 465 ALA B 717 REMARK 465 ALA B 718 REMARK 465 ALA B 719 REMARK 465 LEU B 720 REMARK 465 GLU B 721 REMARK 465 HIS B 722 REMARK 465 HIS B 723 REMARK 465 HIS B 724 REMARK 465 HIS B 725 REMARK 465 HIS B 726 REMARK 465 HIS B 727 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 536 -7.25 -57.88 REMARK 500 HIS A 553 -116.77 51.26 REMARK 500 ASP A 575 -93.37 29.37 REMARK 500 PHE A 590 -20.52 -167.19 REMARK 500 MET A 591 35.42 -156.28 REMARK 500 ARG A 614 36.28 -147.96 REMARK 500 LYS A 635 -8.22 -57.73 REMARK 500 MET A 655 -73.43 -88.48 REMARK 500 ASP A 656 131.35 168.17 REMARK 500 LYS A 658 -19.77 102.49 REMARK 500 SER A 668 -72.26 -73.54 REMARK 500 LEU A 690 20.22 -76.33 REMARK 500 LEU B 536 -7.58 -58.42 REMARK 500 HIS B 553 -116.42 52.04 REMARK 500 ASP B 575 -93.23 29.98 REMARK 500 PHE B 590 -19.21 -167.72 REMARK 500 MET B 591 35.25 -157.54 REMARK 500 ARG B 614 35.52 -148.51 REMARK 500 LYS B 635 -8.82 -56.80 REMARK 500 MET B 655 -73.44 -88.49 REMARK 500 ASP B 656 131.70 168.10 REMARK 500 LYS B 658 -20.04 102.26 REMARK 500 SER B 668 -72.44 -73.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AB4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BREAKAGE-REUNION DOMAIN OF DNA GYRASE REMARK 900 RELATED ID: 1EI1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GYRB-NTD REMARK 900 RELATED ID: 1BJT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LARGE FRAGMENT OF TOPO II REMARK 900 RELATED ID: 1BGW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LARGE FRAGMENT OF TOPO II REMARK 900 RELATED ID: 2RGR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G-SEGMENT AND LARGE FRAGMENT OF TOPO II COMPLEX REMARK 900 RELATED ID: 2NOV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BREAKAGE-REUNION DOMAIN OF TOPO IV REMARK 900 RELATED ID: 1SUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GYRA-CTD DBREF 2ZJT A 487 714 UNP P0C5C5 GYRB_MYCTU 448 675 DBREF 2ZJT B 487 714 UNP P0C5C5 GYRB_MYCTU 448 675 SEQADV 2ZJT MET A 481 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT THR A 482 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT PRO A 483 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT TYR A 484 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA A 485 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT PHE A 486 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LYS A 715 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LEU A 716 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA A 717 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA A 718 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA A 719 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LEU A 720 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT GLU A 721 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 722 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 723 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 724 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 725 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 726 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS A 727 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT MET B 481 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT THR B 482 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT PRO B 483 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT TYR B 484 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA B 485 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT PHE B 486 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LYS B 715 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LEU B 716 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA B 717 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA B 718 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT ALA B 719 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT LEU B 720 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT GLU B 721 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 722 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 723 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 724 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 725 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 726 UNP P0C5C5 EXPRESSION TAG SEQADV 2ZJT HIS B 727 UNP P0C5C5 EXPRESSION TAG SEQRES 1 A 247 MET THR PRO TYR ALA PHE THR ASP PRO ARG LYS SER GLU SEQRES 2 A 247 LEU TYR VAL VAL GLU GLY ASP SER ALA GLY GLY SER ALA SEQRES 3 A 247 LYS SER GLY ARG ASP SER MET PHE GLN ALA ILE LEU PRO SEQRES 4 A 247 LEU ARG GLY LYS ILE ILE ASN VAL GLU LYS ALA ARG ILE SEQRES 5 A 247 ASP ARG VAL LEU LYS ASN THR GLU VAL GLN ALA ILE ILE SEQRES 6 A 247 THR ALA LEU GLY THR GLY ILE HIS ASP GLU PHE ASP ILE SEQRES 7 A 247 GLY LYS LEU ARG TYR HIS LYS ILE VAL LEU MET ALA ASP SEQRES 8 A 247 ALA ASP VAL ASP GLY GLN HIS ILE SER THR LEU LEU LEU SEQRES 9 A 247 THR LEU LEU PHE ARG PHE MET ARG PRO LEU ILE GLU ASN SEQRES 10 A 247 GLY HIS VAL PHE LEU ALA GLN PRO PRO LEU TYR LYS LEU SEQRES 11 A 247 LYS TRP GLN ARG SER ASP PRO GLU PHE ALA TYR SER ASP SEQRES 12 A 247 ARG GLU ARG ASP GLY LEU LEU GLU ALA GLY LEU LYS ALA SEQRES 13 A 247 GLY LYS LYS ILE ASN LYS GLU ASP GLY ILE GLN ARG TYR SEQRES 14 A 247 LYS GLY LEU GLY GLU MET ASP ALA LYS GLU LEU TRP GLU SEQRES 15 A 247 THR THR MET ASP PRO SER VAL ARG VAL LEU ARG GLN VAL SEQRES 16 A 247 THR LEU ASP ASP ALA ALA ALA ALA ASP GLU LEU PHE SER SEQRES 17 A 247 ILE LEU MET GLY GLU ASP VAL ASP ALA ARG ARG SER PHE SEQRES 18 A 247 ILE THR ARG ASN ALA LYS ASP VAL ARG PHE LEU ASP VAL SEQRES 19 A 247 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 247 MET THR PRO TYR ALA PHE THR ASP PRO ARG LYS SER GLU SEQRES 2 B 247 LEU TYR VAL VAL GLU GLY ASP SER ALA GLY GLY SER ALA SEQRES 3 B 247 LYS SER GLY ARG ASP SER MET PHE GLN ALA ILE LEU PRO SEQRES 4 B 247 LEU ARG GLY LYS ILE ILE ASN VAL GLU LYS ALA ARG ILE SEQRES 5 B 247 ASP ARG VAL LEU LYS ASN THR GLU VAL GLN ALA ILE ILE SEQRES 6 B 247 THR ALA LEU GLY THR GLY ILE HIS ASP GLU PHE ASP ILE SEQRES 7 B 247 GLY LYS LEU ARG TYR HIS LYS ILE VAL LEU MET ALA ASP SEQRES 8 B 247 ALA ASP VAL ASP GLY GLN HIS ILE SER THR LEU LEU LEU SEQRES 9 B 247 THR LEU LEU PHE ARG PHE MET ARG PRO LEU ILE GLU ASN SEQRES 10 B 247 GLY HIS VAL PHE LEU ALA GLN PRO PRO LEU TYR LYS LEU SEQRES 11 B 247 LYS TRP GLN ARG SER ASP PRO GLU PHE ALA TYR SER ASP SEQRES 12 B 247 ARG GLU ARG ASP GLY LEU LEU GLU ALA GLY LEU LYS ALA SEQRES 13 B 247 GLY LYS LYS ILE ASN LYS GLU ASP GLY ILE GLN ARG TYR SEQRES 14 B 247 LYS GLY LEU GLY GLU MET ASP ALA LYS GLU LEU TRP GLU SEQRES 15 B 247 THR THR MET ASP PRO SER VAL ARG VAL LEU ARG GLN VAL SEQRES 16 B 247 THR LEU ASP ASP ALA ALA ALA ALA ASP GLU LEU PHE SER SEQRES 17 B 247 ILE LEU MET GLY GLU ASP VAL ASP ALA ARG ARG SER PHE SEQRES 18 B 247 ILE THR ARG ASN ALA LYS ASP VAL ARG PHE LEU ASP VAL SEQRES 19 B 247 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 488 ARG A 490 5 3 HELIX 2 2 ARG A 534 LYS A 537 5 4 HELIX 3 3 ASN A 538 GLY A 549 1 12 HELIX 4 4 ILE A 552 PHE A 556 5 5 HELIX 5 5 ASP A 557 LEU A 561 5 5 HELIX 6 6 ILE A 579 ARG A 589 1 11 HELIX 7 7 MET A 591 ASN A 597 1 7 HELIX 8 8 SER A 622 LYS A 635 1 14 HELIX 9 9 LEU A 660 MET A 665 1 6 HELIX 10 10 THR A 676 LEU A 690 1 15 HELIX 11 11 ASP B 488 ARG B 490 5 3 HELIX 12 12 ARG B 534 LYS B 537 5 4 HELIX 13 13 ASN B 538 GLY B 549 1 12 HELIX 14 14 ILE B 552 PHE B 556 5 5 HELIX 15 15 ASP B 557 LEU B 561 5 5 HELIX 16 16 ILE B 579 ARG B 589 1 11 HELIX 17 17 ARG B 592 ASN B 597 1 6 HELIX 18 18 SER B 622 ALA B 636 1 15 HELIX 19 19 LEU B 660 MET B 665 1 6 HELIX 20 20 THR B 676 LEU B 690 1 15 SHEET 1 A 5 PHE A 514 PRO A 519 0 SHEET 2 A 5 SER A 492 VAL A 497 1 N GLU A 493 O ALA A 516 SHEET 3 A 5 LYS A 565 MET A 569 1 O MET A 569 N VAL A 496 SHEET 4 A 5 VAL A 600 ALA A 603 1 O PHE A 601 N LEU A 568 SHEET 5 A 5 LEU A 672 GLN A 674 -1 O ARG A 673 N LEU A 602 SHEET 1 B 3 GLU A 618 ALA A 620 0 SHEET 2 B 3 TYR A 608 LEU A 610 -1 N LEU A 610 O GLU A 618 SHEET 3 B 3 ILE A 646 ARG A 648 -1 O GLN A 647 N LYS A 609 SHEET 1 C 5 PHE B 514 PRO B 519 0 SHEET 2 C 5 SER B 492 VAL B 497 1 N GLU B 493 O ALA B 516 SHEET 3 C 5 LYS B 565 MET B 569 1 O MET B 569 N VAL B 496 SHEET 4 C 5 VAL B 600 ALA B 603 1 O PHE B 601 N LEU B 568 SHEET 5 C 5 LEU B 672 GLN B 674 -1 O ARG B 673 N LEU B 602 SHEET 1 D 3 GLU B 618 ALA B 620 0 SHEET 2 D 3 TYR B 608 LEU B 610 -1 N LEU B 610 O GLU B 618 SHEET 3 D 3 ILE B 646 ARG B 648 -1 O GLN B 647 N LYS B 609 CRYST1 52.831 52.763 192.579 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005193 0.00000