HEADER OXIDOREDUCTASE 12-MAR-08 2ZK7 TITLE STRUCTURE OF A C-TERMINAL DELETION MUTANT OF THERMOPLASMA ACIDOPHILUM TITLE 2 ALDOHEXOSE DEHYDROGENASE (ALDT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE 1-DEHYDROGENASE RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDT, ALDOHEXOSE DEHYDROGENASE; COMPND 5 EC: 1.1.1.118; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0754; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NISHIOKA,Y.YASUTAKE,Y.NISHIYA,N.TAMURA,T.TAMURA REVDAT 4 01-NOV-23 2ZK7 1 SEQADV REVDAT 3 22-JAN-14 2ZK7 1 JRNL REVDAT 2 13-JUL-11 2ZK7 1 VERSN REVDAT 1 13-JAN-09 2ZK7 0 JRNL AUTH T.NISHIOKA,Y.YASUTAKE,Y.NISHIYA,N.TAMURA,T.TAMURA JRNL TITL C-TERMINAL TAIL DERIVED FROM THE NEIGHBORING SUBUNIT IS JRNL TITL 2 CRITICAL FOR THE ACTIVITY OF THERMOPLASMA ACIDOPHILUM JRNL TITL 3 D-ALDOHEXOSE DEHYDROGENASE JRNL REF PROTEINS V. 74 801 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19089950 JRNL DOI 10.1002/PROT.22300 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 74.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.426 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3732 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5052 ; 1.133 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;39.520 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;17.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 577 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2771 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1788 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2587 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 123 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 0.365 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3822 ; 0.646 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1469 ; 0.696 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1230 ; 1.137 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 81 REMARK 3 RESIDUE RANGE : A 93 A 131 REMARK 3 RESIDUE RANGE : A 140 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7716 10.2386 93.1617 REMARK 3 T TENSOR REMARK 3 T11: -0.1843 T22: -0.1312 REMARK 3 T33: -0.0753 T12: -0.1980 REMARK 3 T13: 0.0627 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 1.4648 L22: 2.8185 REMARK 3 L33: 7.5189 L12: 0.1890 REMARK 3 L13: -0.1013 L23: 0.9481 REMARK 3 S TENSOR REMARK 3 S11: 0.1242 S12: -0.0081 S13: 0.0996 REMARK 3 S21: -0.1026 S22: 0.2654 S23: -0.5219 REMARK 3 S31: -1.0082 S32: 1.3671 S33: -0.3896 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0154 -20.8578 98.5854 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: -0.2260 REMARK 3 T33: -0.1350 T12: 0.2559 REMARK 3 T13: -0.0260 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 3.7608 L22: 1.6908 REMARK 3 L33: 4.4495 L12: 1.1368 REMARK 3 L13: -0.5541 L23: -1.1099 REMARK 3 S TENSOR REMARK 3 S11: -0.2564 S12: -0.6896 S13: -0.1665 REMARK 3 S21: 0.3491 S22: 0.1171 S23: -0.1798 REMARK 3 S31: 0.8163 S32: 0.4774 S33: 0.1393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000028075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13725 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 43.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61100 REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2DTD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOL, 0.8M NA/K TARTRATE, REMARK 280 0.1M NACL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.45200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 224.90400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 168.67800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 281.13000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.22600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.45200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 224.90400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 281.13000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 168.67800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.22600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -68.23800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 168.67800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 82 REMARK 465 ILE A 83 REMARK 465 GLU A 84 REMARK 465 SER A 85 REMARK 465 TYR A 86 REMARK 465 GLY A 87 REMARK 465 LYS A 88 REMARK 465 ILE A 89 REMARK 465 GLU A 90 REMARK 465 SER A 91 REMARK 465 MET A 92 REMARK 465 GLN A 134 REMARK 465 ALA A 135 REMARK 465 SER A 136 REMARK 465 ILE A 137 REMARK 465 ILE A 138 REMARK 465 THR A 139 REMARK 465 ALA A 249 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 248 REMARK 465 ALA B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 7 CG ASP B 7 OD1 0.183 REMARK 500 GLU B 70 CD GLU B 70 OE1 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 30.14 -97.26 REMARK 500 ALA A 45 -19.18 -140.25 REMARK 500 LEU A 105 -62.18 -120.43 REMARK 500 SER A 132 -126.77 -94.69 REMARK 500 ALA A 175 -139.50 -83.89 REMARK 500 ASP A 178 96.74 -63.94 REMARK 500 ASP B 7 -3.83 73.58 REMARK 500 GLU B 84 12.68 -144.39 REMARK 500 GLU B 90 -164.32 50.33 REMARK 500 SER B 91 -76.17 -109.38 REMARK 500 MET B 92 -160.64 51.49 REMARK 500 SER B 93 -81.19 -155.47 REMARK 500 LEU B 105 -57.99 -125.67 REMARK 500 ILE B 137 -111.09 -63.66 REMARK 500 THR B 139 88.90 -67.63 REMARK 500 ASN B 141 85.41 -158.31 REMARK 500 ALA B 175 -141.74 -80.08 REMARK 500 ASP B 178 99.89 -64.74 REMARK 500 SER B 192 57.87 -101.39 REMARK 500 VAL B 241 78.94 -106.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 140 ASN B 141 146.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DTD RELATED DB: PDB REMARK 900 LIGAND-FREE FORM OF A WILDT-TYPE ALDT REMARK 900 RELATED ID: 2DTE RELATED DB: PDB REMARK 900 COFACTOR-BOUND FORM OF A WILD-TYPE ALDT REMARK 900 RELATED ID: 2DTX RELATED DB: PDB REMARK 900 SUBSTRATE-BOUND FORM OF A WILD-TYPE ALDT REMARK 999 REMARK 999 SEQUENCE REMARK 999 SIX C-TERMINAL RESIDUES(250-255) ARE DELETED. DBREF 2ZK7 A 1 249 UNP Q9HK51 Q9HK51_THEAC 1 249 DBREF 2ZK7 B 1 249 UNP Q9HK51 Q9HK51_THEAC 1 249 SEQADV 2ZK7 MET A -7 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 GLY A -6 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A -5 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A -4 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A -3 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A -2 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A -1 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS A 0 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 MET B -7 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 GLY B -6 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B -5 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B -4 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B -3 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B -2 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B -1 UNP Q9HK51 EXPRESSION TAG SEQADV 2ZK7 HIS B 0 UNP Q9HK51 EXPRESSION TAG SEQRES 1 A 257 MET GLY HIS HIS HIS HIS HIS HIS MET PHE SER ASP LEU SEQRES 2 A 257 ARG ASP LYS VAL VAL ILE VAL THR GLY ALA SER MET GLY SEQRES 3 A 257 ILE GLY ARG ALA ILE ALA GLU ARG PHE VAL ASP GLU GLY SEQRES 4 A 257 SER LYS VAL ILE ASP LEU SER ILE HIS ASP PRO GLY GLU SEQRES 5 A 257 ALA LYS TYR ASP HIS ILE GLU CYS ASP VAL THR ASN PRO SEQRES 6 A 257 ASP GLN VAL LYS ALA SER ILE ASP HIS ILE PHE LYS GLU SEQRES 7 A 257 TYR GLY SER ILE SER VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 A 257 GLU SER TYR GLY LYS ILE GLU SER MET SER MET GLY GLU SEQRES 9 A 257 TRP ARG ARG ILE ILE ASP VAL ASN LEU PHE GLY TYR TYR SEQRES 10 A 257 TYR ALA SER LYS PHE ALA ILE PRO TYR MET ILE ARG SER SEQRES 11 A 257 ARG ASP PRO SER ILE VAL ASN ILE SER SER VAL GLN ALA SEQRES 12 A 257 SER ILE ILE THR LYS ASN ALA SER ALA TYR VAL THR SER SEQRES 13 A 257 LYS HIS ALA VAL ILE GLY LEU THR LYS SER ILE ALA LEU SEQRES 14 A 257 ASP TYR ALA PRO LEU LEU ARG CYS ASN ALA VAL CYS PRO SEQRES 15 A 257 ALA THR ILE ASP THR PRO LEU VAL ARG LYS ALA ALA GLU SEQRES 16 A 257 LEU GLU VAL GLY SER ASP PRO MET ARG ILE GLU LYS LYS SEQRES 17 A 257 ILE SER GLU TRP GLY HIS GLU HIS PRO MET GLN ARG ILE SEQRES 18 A 257 GLY LYS PRO GLN GLU VAL ALA SER ALA VAL ALA PHE LEU SEQRES 19 A 257 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR CYS LEU SEQRES 20 A 257 TYR VAL ASP GLY GLY LEU SER ILE ARG ALA SEQRES 1 B 257 MET GLY HIS HIS HIS HIS HIS HIS MET PHE SER ASP LEU SEQRES 2 B 257 ARG ASP LYS VAL VAL ILE VAL THR GLY ALA SER MET GLY SEQRES 3 B 257 ILE GLY ARG ALA ILE ALA GLU ARG PHE VAL ASP GLU GLY SEQRES 4 B 257 SER LYS VAL ILE ASP LEU SER ILE HIS ASP PRO GLY GLU SEQRES 5 B 257 ALA LYS TYR ASP HIS ILE GLU CYS ASP VAL THR ASN PRO SEQRES 6 B 257 ASP GLN VAL LYS ALA SER ILE ASP HIS ILE PHE LYS GLU SEQRES 7 B 257 TYR GLY SER ILE SER VAL LEU VAL ASN ASN ALA GLY ILE SEQRES 8 B 257 GLU SER TYR GLY LYS ILE GLU SER MET SER MET GLY GLU SEQRES 9 B 257 TRP ARG ARG ILE ILE ASP VAL ASN LEU PHE GLY TYR TYR SEQRES 10 B 257 TYR ALA SER LYS PHE ALA ILE PRO TYR MET ILE ARG SER SEQRES 11 B 257 ARG ASP PRO SER ILE VAL ASN ILE SER SER VAL GLN ALA SEQRES 12 B 257 SER ILE ILE THR LYS ASN ALA SER ALA TYR VAL THR SER SEQRES 13 B 257 LYS HIS ALA VAL ILE GLY LEU THR LYS SER ILE ALA LEU SEQRES 14 B 257 ASP TYR ALA PRO LEU LEU ARG CYS ASN ALA VAL CYS PRO SEQRES 15 B 257 ALA THR ILE ASP THR PRO LEU VAL ARG LYS ALA ALA GLU SEQRES 16 B 257 LEU GLU VAL GLY SER ASP PRO MET ARG ILE GLU LYS LYS SEQRES 17 B 257 ILE SER GLU TRP GLY HIS GLU HIS PRO MET GLN ARG ILE SEQRES 18 B 257 GLY LYS PRO GLN GLU VAL ALA SER ALA VAL ALA PHE LEU SEQRES 19 B 257 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR CYS LEU SEQRES 20 B 257 TYR VAL ASP GLY GLY LEU SER ILE ARG ALA FORMUL 3 HOH *37(H2 O) HELIX 1 1 GLY A 18 GLU A 30 1 13 HELIX 2 2 ASN A 56 GLY A 72 1 17 HELIX 3 3 SER A 93 LEU A 105 1 13 HELIX 4 4 LEU A 105 ILE A 120 1 16 HELIX 5 5 ALA A 142 ALA A 164 1 23 HELIX 6 6 THR A 179 GLY A 191 1 13 HELIX 7 7 MET A 195 HIS A 206 1 12 HELIX 8 8 LYS A 215 SER A 228 1 14 HELIX 9 9 ARG A 229 SER A 232 5 4 HELIX 10 10 PHE B 2 ARG B 6 5 5 HELIX 11 11 MET B 17 GLY B 31 1 15 HELIX 12 12 ASN B 56 TYR B 71 1 16 HELIX 13 13 SER B 93 LEU B 105 1 13 HELIX 14 14 LEU B 105 ILE B 120 1 16 HELIX 15 15 SER B 132 SER B 136 5 5 HELIX 16 16 ALA B 142 ALA B 164 1 23 HELIX 17 17 THR B 179 GLY B 191 1 13 HELIX 18 18 ASP B 193 HIS B 206 1 14 HELIX 19 19 LYS B 215 SER B 228 1 14 HELIX 20 20 ARG B 229 SER B 232 5 4 SHEET 1 A 7 ASP A 48 GLU A 51 0 SHEET 2 A 7 LYS A 33 SER A 38 1 N ASP A 36 O ILE A 50 SHEET 3 A 7 VAL A 9 THR A 13 1 N VAL A 12 O ILE A 35 SHEET 4 A 7 VAL A 76 ASN A 79 1 O VAL A 78 N ILE A 11 SHEET 5 A 7 SER A 126 ILE A 130 1 O ILE A 130 N ASN A 79 SHEET 6 A 7 ARG A 168 PRO A 174 1 O ARG A 168 N ILE A 127 SHEET 7 A 7 CYS A 238 VAL A 241 1 O LEU A 239 N ALA A 171 SHEET 1 B 7 ASP B 48 GLU B 51 0 SHEET 2 B 7 LYS B 33 SER B 38 1 N ASP B 36 O ASP B 48 SHEET 3 B 7 VAL B 9 VAL B 12 1 N VAL B 10 O ILE B 35 SHEET 4 B 7 VAL B 76 ASN B 79 1 O VAL B 78 N ILE B 11 SHEET 5 B 7 SER B 126 ILE B 130 1 O VAL B 128 N LEU B 77 SHEET 6 B 7 ARG B 168 PRO B 174 1 O ASN B 170 N ASN B 129 SHEET 7 B 7 CYS B 238 VAL B 241 1 O LEU B 239 N ALA B 171 SSBOND 1 CYS A 173 CYS A 238 1555 1555 2.04 SSBOND 2 CYS B 173 CYS B 238 1555 1555 2.05 CISPEP 1 ALA A 164 PRO A 165 0 -1.99 CISPEP 2 ILE B 89 GLU B 90 0 -3.64 CISPEP 3 ALA B 164 PRO B 165 0 0.07 CRYST1 68.238 68.238 337.356 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014655 0.008461 0.000000 0.00000 SCALE2 0.000000 0.016922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002964 0.00000