HEADER HYDROLASE 17-APR-08 2ZMF TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL GAF DOMAIN OF HUMAN TITLE 2 PHOSPHODIESTERASE 10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 10A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: C-TERMINAL GAF DOMAIN; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE (ESCHERICHIA COLI); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PX060608-01 KEYWDS GAF DOMAIN, PHOSPHODIESTERASE, CAMP, CGMP, CGMP-BINDING, HYDROLASE, KEYWDS 2 NUCLEOTIDE-BINDING, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR N.HANDA,S.KISHISHITA,E.MIZOHATA,K.OMORI,J.KOTERA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 16-OCT-24 2ZMF 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ZMF 1 VERSN REVDAT 3 24-FEB-09 2ZMF 1 VERSN REVDAT 2 12-AUG-08 2ZMF 1 JRNL REVDAT 1 29-APR-08 2ZMF 0 SPRSDE 29-APR-08 2ZMF 2E4S JRNL AUTH N.HANDA,E.MIZOHATA,S.KISHISHITA,M.TOYAMA,S.MORITA, JRNL AUTH 2 T.UCHIKUBO-KAMO,R.AKASAKA,K.OMORI,J.KOTERA,T.TERADA, JRNL AUTH 3 M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE GAF-B DOMAIN FROM HUMAN JRNL TITL 2 PHOSPHODIESTERASE 10A COMPLEXED WITH ITS LIGAND, CAMP JRNL REF J.BIOL.CHEM. V. 283 19657 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18477562 JRNL DOI 10.1074/JBC.M800595200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.46000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.815 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2889 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3907 ; 1.723 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2156 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1283 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 167 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 0.940 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2812 ; 1.697 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 3.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1095 ; 4.403 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1225 28.9513 75.4072 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.3624 REMARK 3 T33: 0.1912 T12: -0.1133 REMARK 3 T13: 0.0299 T23: 0.0775 REMARK 3 L TENSOR REMARK 3 L11: 20.6973 L22: 24.0296 REMARK 3 L33: 10.9577 L12: -22.0255 REMARK 3 L13: 23.7912 L23: -9.8026 REMARK 3 S TENSOR REMARK 3 S11: -0.7837 S12: -0.2620 S13: 0.9548 REMARK 3 S21: 1.4944 S22: -0.3002 S23: -1.3532 REMARK 3 S31: 0.0988 S32: 0.5576 S33: 1.0838 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4367 32.2624 58.3823 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1654 REMARK 3 T33: 0.2430 T12: 0.0395 REMARK 3 T13: 0.1047 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 3.4728 L22: 2.0082 REMARK 3 L33: 2.8765 L12: -0.3700 REMARK 3 L13: -1.6976 L23: 1.0642 REMARK 3 S TENSOR REMARK 3 S11: 0.1875 S12: 0.0268 S13: 0.7017 REMARK 3 S21: 0.2098 S22: 0.0721 S23: 0.0516 REMARK 3 S31: -0.4364 S32: -0.1661 S33: -0.2596 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6718 28.4496 50.7999 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.2101 REMARK 3 T33: 0.2045 T12: 0.0246 REMARK 3 T13: 0.0052 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 6.0929 L22: 2.5740 REMARK 3 L33: 7.0484 L12: 0.0994 REMARK 3 L13: -2.7243 L23: -1.3509 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: 0.3221 S13: 0.7170 REMARK 3 S21: 0.0560 S22: 0.1679 S23: -0.1493 REMARK 3 S31: -0.4969 S32: -0.0039 S33: -0.2652 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0704 22.9659 55.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.2201 REMARK 3 T33: 0.2006 T12: 0.0039 REMARK 3 T13: 0.0156 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 4.6804 L22: 0.8302 REMARK 3 L33: 2.0532 L12: -0.6134 REMARK 3 L13: -1.7235 L23: 0.3209 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: -0.0705 S13: 0.0062 REMARK 3 S21: 0.0096 S22: 0.1683 S23: 0.0171 REMARK 3 S31: 0.0963 S32: -0.0420 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 307 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4716 21.4152 71.8399 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.2337 REMARK 3 T33: 0.2194 T12: -0.0012 REMARK 3 T13: -0.0120 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 0.6766 L22: 0.2041 REMARK 3 L33: 4.1827 L12: 0.4211 REMARK 3 L13: -0.0251 L23: -1.3170 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: 0.0959 S13: 0.0935 REMARK 3 S21: 0.0391 S22: 0.0836 S23: 0.1245 REMARK 3 S31: -0.1704 S32: -0.2256 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 308 B 322 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8095 14.2856 72.6663 REMARK 3 T TENSOR REMARK 3 T11: 0.3446 T22: 0.3326 REMARK 3 T33: 0.2498 T12: -0.0798 REMARK 3 T13: -0.1698 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 8.4191 L22: 8.7094 REMARK 3 L33: 16.7521 L12: -0.8003 REMARK 3 L13: -5.1293 L23: 2.3654 REMARK 3 S TENSOR REMARK 3 S11: -0.4457 S12: 1.4745 S13: -0.0702 REMARK 3 S21: -1.4401 S22: -0.0157 S23: 0.5506 REMARK 3 S31: 0.6925 S32: -0.3522 S33: 0.4614 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 323 B 411 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7903 18.6187 84.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.1824 REMARK 3 T33: 0.1384 T12: -0.0068 REMARK 3 T13: 0.0134 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.9096 L22: 1.4154 REMARK 3 L33: 3.2221 L12: -0.0777 REMARK 3 L13: 0.7081 L23: -1.0890 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.1494 S13: 0.0931 REMARK 3 S21: 0.0144 S22: -0.1485 S23: -0.0320 REMARK 3 S31: -0.2016 S32: 0.2477 S33: 0.0714 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 412 B 419 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6336 35.6076 73.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.2947 REMARK 3 T33: 0.2964 T12: 0.0765 REMARK 3 T13: 0.0146 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 39.3175 L22: 41.7387 REMARK 3 L33: 30.6026 L12: -24.3766 REMARK 3 L13: 5.2722 L23: -1.6668 REMARK 3 S TENSOR REMARK 3 S11: 0.5788 S12: -0.6907 S13: 1.2083 REMARK 3 S21: -0.6628 S22: -0.1882 S23: 1.2954 REMARK 3 S31: -1.5431 S32: -1.1873 S33: -0.3906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000028155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.9793, 0.9640 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.882 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1476 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.223 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.84133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.68267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.68267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.84133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLY A 245 REMARK 465 HIS A 423 REMARK 465 SER A 424 REMARK 465 GLU A 425 REMARK 465 CYS A 426 REMARK 465 ILE A 427 REMARK 465 GLY B 239 REMARK 465 SER B 240 REMARK 465 SER B 241 REMARK 465 GLY B 242 REMARK 465 SER B 243 REMARK 465 SER B 244 REMARK 465 GLY B 245 REMARK 465 GLN B 246 REMARK 465 THR B 247 REMARK 465 ARG B 420 REMARK 465 ILE B 421 REMARK 465 ARG B 422 REMARK 465 HIS B 423 REMARK 465 SER B 424 REMARK 465 GLU B 425 REMARK 465 CYS B 426 REMARK 465 ILE B 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 251 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 255 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 305 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 268 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 302 -60.64 -129.39 REMARK 500 ASN A 386 100.69 70.74 REMARK 500 SER A 389 54.64 34.54 REMARK 500 ASP B 302 -53.49 -121.32 REMARK 500 ASN B 386 87.63 67.23 REMARK 500 TYR B 418 49.61 -81.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 2001 DBREF 2ZMF A 246 427 UNP Q9Y233 PDE10_HUMAN 246 427 DBREF 2ZMF B 246 427 UNP Q9Y233 PDE10_HUMAN 246 427 SEQADV 2ZMF GLY A 239 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER A 240 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER A 241 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF GLY A 242 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER A 243 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER A 244 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF GLY A 245 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF GLY B 239 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER B 240 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER B 241 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF GLY B 242 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER B 243 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF SER B 244 UNP Q9Y233 EXPRESSION TAG SEQADV 2ZMF GLY B 245 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 189 GLY SER SER GLY SER SER GLY GLN THR GLU LEU ASN ASP SEQRES 2 A 189 PHE LEU LEU ASP VAL SER LYS THR TYR PHE ASP ASN ILE SEQRES 3 A 189 VAL ALA ILE ASP SER LEU LEU GLU HIS ILE MSE ILE TYR SEQRES 4 A 189 ALA LYS ASN LEU VAL ASN ALA ASP ARG CYS ALA LEU PHE SEQRES 5 A 189 GLN VAL ASP HIS LYS ASN LYS GLU LEU TYR SER ASP LEU SEQRES 6 A 189 PHE ASP ILE GLY GLU GLU LYS GLU GLY LYS PRO VAL PHE SEQRES 7 A 189 LYS LYS THR LYS GLU ILE ARG PHE SER ILE GLU LYS GLY SEQRES 8 A 189 ILE ALA GLY GLN VAL ALA ARG THR GLY GLU VAL LEU ASN SEQRES 9 A 189 ILE PRO ASP ALA TYR ALA ASP PRO ARG PHE ASN ARG GLU SEQRES 10 A 189 VAL ASP LEU TYR THR GLY TYR THR THR ARG ASN ILE LEU SEQRES 11 A 189 CYS MSE PRO ILE VAL SER ARG GLY SER VAL ILE GLY VAL SEQRES 12 A 189 VAL GLN MSE VAL ASN LYS ILE SER GLY SER ALA PHE SER SEQRES 13 A 189 LYS THR ASP GLU ASN ASN PHE LYS MSE PHE ALA VAL PHE SEQRES 14 A 189 CYS ALA LEU ALA LEU HIS CYS ALA ASN MSE TYR HIS ARG SEQRES 15 A 189 ILE ARG HIS SER GLU CYS ILE SEQRES 1 B 189 GLY SER SER GLY SER SER GLY GLN THR GLU LEU ASN ASP SEQRES 2 B 189 PHE LEU LEU ASP VAL SER LYS THR TYR PHE ASP ASN ILE SEQRES 3 B 189 VAL ALA ILE ASP SER LEU LEU GLU HIS ILE MSE ILE TYR SEQRES 4 B 189 ALA LYS ASN LEU VAL ASN ALA ASP ARG CYS ALA LEU PHE SEQRES 5 B 189 GLN VAL ASP HIS LYS ASN LYS GLU LEU TYR SER ASP LEU SEQRES 6 B 189 PHE ASP ILE GLY GLU GLU LYS GLU GLY LYS PRO VAL PHE SEQRES 7 B 189 LYS LYS THR LYS GLU ILE ARG PHE SER ILE GLU LYS GLY SEQRES 8 B 189 ILE ALA GLY GLN VAL ALA ARG THR GLY GLU VAL LEU ASN SEQRES 9 B 189 ILE PRO ASP ALA TYR ALA ASP PRO ARG PHE ASN ARG GLU SEQRES 10 B 189 VAL ASP LEU TYR THR GLY TYR THR THR ARG ASN ILE LEU SEQRES 11 B 189 CYS MSE PRO ILE VAL SER ARG GLY SER VAL ILE GLY VAL SEQRES 12 B 189 VAL GLN MSE VAL ASN LYS ILE SER GLY SER ALA PHE SER SEQRES 13 B 189 LYS THR ASP GLU ASN ASN PHE LYS MSE PHE ALA VAL PHE SEQRES 14 B 189 CYS ALA LEU ALA LEU HIS CYS ALA ASN MSE TYR HIS ARG SEQRES 15 B 189 ILE ARG HIS SER GLU CYS ILE MODRES 2ZMF MSE A 275 MET SELENOMETHIONINE MODRES 2ZMF MSE A 370 MET SELENOMETHIONINE MODRES 2ZMF MSE A 384 MET SELENOMETHIONINE MODRES 2ZMF MSE A 403 MET SELENOMETHIONINE MODRES 2ZMF MSE A 417 MET SELENOMETHIONINE MODRES 2ZMF MSE B 275 MET SELENOMETHIONINE MODRES 2ZMF MSE B 370 MET SELENOMETHIONINE MODRES 2ZMF MSE B 384 MET SELENOMETHIONINE MODRES 2ZMF MSE B 403 MET SELENOMETHIONINE MODRES 2ZMF MSE B 417 MET SELENOMETHIONINE HET MSE A 275 8 HET MSE A 370 8 HET MSE A 384 8 HET MSE A 403 8 HET MSE A 417 8 HET MSE B 275 8 HET MSE B 370 16 HET MSE B 384 8 HET MSE B 403 8 HET MSE B 417 8 HET CMP A2001 22 HET CMP B2001 22 HETNAM MSE SELENOMETHIONINE HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 5 HOH *168(H2 O) HELIX 1 1 GLN A 246 ASN A 263 1 18 HELIX 2 2 ALA A 266 ASN A 283 1 18 HELIX 3 3 LYS A 328 GLY A 338 1 11 HELIX 4 4 ASP A 345 ASP A 349 5 5 HELIX 5 5 ARG A 354 GLY A 361 1 8 HELIX 6 6 SER A 394 ARG A 420 1 27 HELIX 7 7 GLU B 248 LYS B 258 1 11 HELIX 8 8 ASP B 262 VAL B 282 1 21 HELIX 9 9 LYS B 328 GLY B 338 1 11 HELIX 10 10 ASP B 345 ASP B 349 5 5 HELIX 11 11 ARG B 354 GLY B 361 1 8 HELIX 12 12 SER B 394 PHE B 404 1 11 HELIX 13 13 PHE B 404 TYR B 418 1 15 SHEET 1 A 3 LYS A 317 LYS A 318 0 SHEET 2 A 3 GLU A 298 PHE A 304 -1 N PHE A 304 O LYS A 317 SHEET 3 A 3 ARG A 323 SER A 325 -1 O PHE A 324 N LEU A 299 SHEET 1 B 6 LYS A 317 LYS A 318 0 SHEET 2 B 6 GLU A 298 PHE A 304 -1 N PHE A 304 O LYS A 317 SHEET 3 B 6 ALA A 284 ASP A 293 -1 N ASP A 293 O GLU A 298 SHEET 4 B 6 SER A 377 LYS A 387 -1 O VAL A 381 N PHE A 290 SHEET 5 B 6 ILE A 367 SER A 374 -1 N MSE A 370 O VAL A 382 SHEET 6 B 6 LEU A 341 ILE A 343 -1 N ILE A 343 O ILE A 367 SHEET 1 C 2 GLU A 309 LYS A 310 0 SHEET 2 C 2 LYS A 313 PRO A 314 -1 O LYS A 313 N LYS A 310 SHEET 1 D 3 PRO B 314 LYS B 318 0 SHEET 2 D 3 GLU B 298 GLU B 309 -1 N PHE B 304 O LYS B 317 SHEET 3 D 3 ARG B 323 SER B 325 -1 O PHE B 324 N LEU B 299 SHEET 1 E 6 PRO B 314 LYS B 318 0 SHEET 2 E 6 GLU B 298 GLU B 309 -1 N PHE B 304 O LYS B 317 SHEET 3 E 6 ALA B 284 ASP B 293 -1 N GLN B 291 O TYR B 300 SHEET 4 E 6 SER B 377 LYS B 387 -1 O VAL B 385 N ARG B 286 SHEET 5 E 6 ILE B 367 SER B 374 -1 N ILE B 372 O GLY B 380 SHEET 6 E 6 LEU B 341 ILE B 343 -1 N ILE B 343 O ILE B 367 LINK C ILE A 274 N MSE A 275 1555 1555 1.33 LINK C MSE A 275 N ILE A 276 1555 1555 1.33 LINK C CYS A 369 N MSE A 370 1555 1555 1.34 LINK C MSE A 370 N PRO A 371 1555 1555 1.34 LINK C GLN A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N VAL A 385 1555 1555 1.34 LINK C LYS A 402 N MSE A 403 1555 1555 1.32 LINK C MSE A 403 N PHE A 404 1555 1555 1.35 LINK C ASN A 416 N MSE A 417 1555 1555 1.33 LINK C MSE A 417 N TYR A 418 1555 1555 1.34 LINK C ILE B 274 N MSE B 275 1555 1555 1.34 LINK C MSE B 275 N ILE B 276 1555 1555 1.34 LINK C CYS B 369 N AMSE B 370 1555 1555 1.33 LINK C CYS B 369 N BMSE B 370 1555 1555 1.34 LINK C AMSE B 370 N PRO B 371 1555 1555 1.33 LINK C BMSE B 370 N PRO B 371 1555 1555 1.33 LINK C GLN B 383 N MSE B 384 1555 1555 1.34 LINK C MSE B 384 N VAL B 385 1555 1555 1.32 LINK C LYS B 402 N MSE B 403 1555 1555 1.32 LINK C MSE B 403 N PHE B 404 1555 1555 1.32 LINK C ASN B 416 N MSE B 417 1555 1555 1.33 LINK C MSE B 417 N TYR B 418 1555 1555 1.33 SITE 1 AC1 17 ARG A 286 CYS A 287 ALA A 288 PHE A 304 SITE 2 AC1 17 ASP A 305 PHE A 324 GLY A 329 ILE A 330 SITE 3 AC1 17 ALA A 331 PHE A 352 ASN A 353 ASP A 357 SITE 4 AC1 17 THR A 364 ILE A 367 GLN A 383 HOH A2003 SITE 5 AC1 17 HOH A2004 SITE 1 AC2 17 ARG B 286 CYS B 287 ALA B 288 PHE B 304 SITE 2 AC2 17 ASP B 305 GLY B 329 ILE B 330 ALA B 331 SITE 3 AC2 17 PHE B 352 ASN B 353 ASP B 357 TYR B 362 SITE 4 AC2 17 THR B 364 ILE B 367 GLN B 383 HOH B2002 SITE 5 AC2 17 HOH B2003 CRYST1 74.506 74.506 146.524 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013422 0.007749 0.000000 0.00000 SCALE2 0.000000 0.015498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006825 0.00000