HEADER APOPTOSIS 22-APR-08 2ZN9 TITLE CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-20ALG-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 20-191; COMPND 5 SYNONYM: APOPTOSIS-LINKED GENE 2 PROTEIN, PROBABLE CALCIUM-BINDING COMPND 6 PROTEIN ALG-2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6, ALG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS PENTA-EF-HAND PROTEIN, CALCIUM BINDING PROTEIN, APOPTOSIS, KEYWDS 2 ENDOPLASMIC RETICULUM, MEMBRANE, NUCLEUS, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR H.SUZUKI,M.KAWASAKI,T.INUZUKA,T.KAKIUCHI,H.SHIBATA,S.WAKATSUKI,M.MAKI REVDAT 4 01-NOV-23 2ZN9 1 REMARK REVDAT 3 24-FEB-09 2ZN9 1 VERSN REVDAT 2 04-NOV-08 2ZN9 1 JRNL REVDAT 1 09-SEP-08 2ZN9 0 JRNL AUTH H.SUZUKI,M.KAWASAKI,T.INUZUKA,M.OKUMURA,T.KAKIUCHI, JRNL AUTH 2 H.SHIBATA,S.WAKATSUKI,M.MAKI JRNL TITL STRUCTURAL BASIS FOR CA(2+)-DEPENDENT FORMATION OF JRNL TITL 2 ALG-2/ALIX PEPTIDE COMPLEX: CA(2+)/EF3-DRIVEN ARGININE JRNL TITL 3 SWITCH MECHANISM JRNL REF STRUCTURE V. 16 1562 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18940611 JRNL DOI 10.1016/J.STR.2008.07.012 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.411 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2942 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3953 ; 1.339 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 5.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;34.045 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;18.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2266 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1374 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2015 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 18 ; 0.136 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.009 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 0.594 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2713 ; 1.077 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 1.537 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 2.404 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HQV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M CALCIUM ACETATE HYDRATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.83150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.91575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.74725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 72.02400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 22.91575 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 20 REMARK 465 ILE A 190 REMARK 465 VAL A 191 REMARK 465 ALA B 20 REMARK 465 VAL B 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 114.72 -31.66 REMARK 500 ALA A 78 49.37 38.68 REMARK 500 GLN A 172 37.82 32.88 REMARK 500 TRP B 57 17.86 84.25 REMARK 500 ASN B 61 114.60 -33.31 REMARK 500 GLU B 75 44.19 -83.54 REMARK 500 ASN B 76 85.79 20.12 REMARK 500 LYS B 77 19.04 -143.48 REMARK 500 SER B 189 58.93 -96.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BOTH POLYETHYLENE GLYCOLS(12P AND 2PE) ARE A PART OF PEG REMARK 600 8000 USED IN THE CRYSTALLIZATION CONDITION. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P B 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12P B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF ALG-2 REMARK 900 RELATED ID: 2ZND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-FREE FORM OF DES3-20ALG-2 REMARK 900 RELATED ID: 2ZNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF DES3-23ALG-2 COMPLEXED WITH REMARK 900 ALIX ABS PEPTIDE DBREF 2ZN9 A 20 191 UNP O75340 PDCD6_HUMAN 20 191 DBREF 2ZN9 B 20 191 UNP O75340 PDCD6_HUMAN 20 191 SEQRES 1 A 172 ALA ALA LEU PRO ASP GLN SER PHE LEU TRP ASN VAL PHE SEQRES 2 A 172 GLN ARG VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP SEQRES 3 A 172 THR GLU LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR SEQRES 4 A 172 PRO PHE ASN PRO VAL THR VAL ARG SER ILE ILE SER MET SEQRES 5 A 172 PHE ASP ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU SEQRES 6 A 172 PHE THR GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN SEQRES 7 A 172 VAL PHE ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE SEQRES 8 A 172 ASP LYS ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY SEQRES 9 A 172 TYR ARG LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG SEQRES 10 A 172 LYS PHE ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP SEQRES 11 A 172 ASP PHE ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR SEQRES 12 A 172 ASP ILE PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP SEQRES 13 A 172 ILE GLN VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SEQRES 14 A 172 SER ILE VAL SEQRES 1 B 172 ALA ALA LEU PRO ASP GLN SER PHE LEU TRP ASN VAL PHE SEQRES 2 B 172 GLN ARG VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP SEQRES 3 B 172 THR GLU LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR SEQRES 4 B 172 PRO PHE ASN PRO VAL THR VAL ARG SER ILE ILE SER MET SEQRES 5 B 172 PHE ASP ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU SEQRES 6 B 172 PHE THR GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN SEQRES 7 B 172 VAL PHE ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE SEQRES 8 B 172 ASP LYS ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY SEQRES 9 B 172 TYR ARG LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG SEQRES 10 B 172 LYS PHE ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP SEQRES 11 B 172 ASP PHE ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR SEQRES 12 B 172 ASP ILE PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP SEQRES 13 B 172 ILE GLN VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SEQRES 14 B 172 SER ILE VAL HET CA A 901 1 HET CA A 902 1 HET CA A 903 1 HET CA A 904 1 HET 2PE A 1 28 HET CA B 901 1 HET CA B 902 1 HET CA B 903 1 HET 12P B 2 34 HETNAM CA CALCIUM ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM 12P DODECAETHYLENE GLYCOL HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 3 CA 7(CA 2+) FORMUL 7 2PE C18 H38 O10 FORMUL 11 12P C24 H50 O13 FORMUL 12 HOH *46(H2 O) HELIX 1 1 ASP A 24 ASP A 36 1 13 HELIX 2 2 ASP A 45 GLN A 50 1 6 HELIX 3 3 ASN A 61 ASP A 73 1 13 HELIX 4 4 ASN A 81 ASP A 103 1 23 HELIX 5 5 ASP A 111 PHE A 122 1 12 HELIX 6 6 GLN A 129 ASP A 139 1 11 HELIX 7 7 ALA A 147 ASP A 169 1 23 HELIX 8 8 TYR A 180 PHE A 188 1 9 HELIX 9 9 ASP B 24 ASP B 36 1 13 HELIX 10 10 SER B 44 LEU B 52 1 9 HELIX 11 11 ASN B 61 ASP B 73 1 13 HELIX 12 12 ASN B 81 ASP B 103 1 23 HELIX 13 13 ASP B 111 PHE B 122 1 12 HELIX 14 14 SER B 127 ASP B 139 1 13 HELIX 15 15 ALA B 147 ASP B 169 1 23 HELIX 16 16 TYR B 180 PHE B 188 1 9 SHEET 1 A 2 ILE A 43 SER A 44 0 SHEET 2 A 2 GLY A 79 VAL A 80 -1 O VAL A 80 N ILE A 43 SHEET 1 B 2 TRP A 175 SER A 179 0 SHEET 2 B 2 TRP B 175 SER B 179 -1 O VAL B 178 N ILE A 176 SITE 1 AC1 6 ASP A 36 ASP A 38 SER A 40 VAL A 42 SITE 2 AC1 6 GLU A 47 HOH A 927 SITE 1 AC2 5 ASP A 103 ASP A 105 SER A 107 MET A 109 SITE 2 AC2 5 GLU A 114 SITE 1 AC3 6 ASP A 169 ASP A 171 ASP A 173 TRP A 175 SITE 2 AC3 6 HOH A 924 HOH A 928 SITE 1 AC4 4 ASN A 106 HOH A 920 ASN B 106 HOH B 924 SITE 1 AC5 8 TYR A 91 TRP A 95 PHE A 122 GLY A 123 SITE 2 AC5 8 TYR A 124 ARG A 166 PRO B 23 GLN B 25 SITE 1 AC6 6 ASP B 36 ASP B 38 SER B 40 VAL B 42 SITE 2 AC6 6 GLU B 47 HOH B 915 SITE 1 AC7 5 ASP B 103 ASP B 105 SER B 107 MET B 109 SITE 2 AC7 5 GLU B 114 SITE 1 AC8 6 ASP B 169 ASP B 171 ASP B 173 TRP B 175 SITE 2 AC8 6 HOH B 914 HOH B 925 SITE 1 AC9 11 ALA A 21 PRO A 23 GLN A 25 LEU A 28 SITE 2 AC9 11 THR A 86 TYR B 91 ASP B 94 TRP B 95 SITE 3 AC9 11 GLY B 123 TYR B 124 ARG B 166 CRYST1 72.024 72.024 91.663 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010910 0.00000