HEADER HYDROLASE 01-MAY-08 2ZNR TITLE CRYSTAL STRUCTURE OF THE DUB DOMAIN OF HUMAN AMSH-LP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMSH-LIKE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MPN DOMAIN, DUB DOMAIN, UNP RESIDUES 264-436; COMPND 5 SYNONYM: AMSH-LP, STAM-BINDING PROTEIN-LIKE 1; COMPND 6 EC: 3.1.2.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STAMBPL1, AMSHLP, KIAA1373; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLD GST KEYWDS METAL BINDING PROTEIN, ALTERNATIVE SPLICING, HYDROLASE, METAL- KEYWDS 2 BINDING, METALLOPROTEASE, PROTEASE, UBL CONJUGATION PATHWAY, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR Y.SATO,Y.AZUSA,A.YAMAGATA,H.MIMURA,X.WANG,M.YAMASHITA,K.OOKATA, AUTHOR 2 O.NUREKI,K.IWAI,M.KOMADA,S.FUKAI REVDAT 4 13-MAR-24 2ZNR 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2ZNR 1 VERSN REVDAT 2 23-SEP-08 2ZNR 1 JRNL REVDAT 1 02-SEP-08 2ZNR 0 JRNL AUTH Y.SATO,A.YOSHIKAWA,A.YAMAGATA,H.MIMURA,M.YAMASHITA,K.OOKATA, JRNL AUTH 2 O.NUREKI,K.IWAI,M.KOMADA,S.FUKAI JRNL TITL STRUCTURAL BASIS FOR SPECIFIC CLEAVAGE OF LYS 63-LINKED JRNL TITL 2 POLYUBIQUITIN CHAINS JRNL REF NATURE V. 455 358 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 18758443 JRNL DOI 10.1038/NATURE07254 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 72536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1210 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.1360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1478 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2005 ; 1.261 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 5.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;31.570 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 253 ;11.334 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 8.306 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1095 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 680 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1014 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.053 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 934 ; 1.215 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1490 ; 1.817 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 590 ; 2.165 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 508 ; 3.012 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1524 ; 1.249 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 272 ; 4.374 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1446 ; 4.158 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45MM SODIUM ACETATE BUFFER (PH 4.6), REMARK 280 22% PEG 4000, 90MM AMMONIUM ACETATE, 10MM PRASEODYMIUM (III) REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.12867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.56433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.34650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.78217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.91083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 382 CE NZ REMARK 480 LYS A 384 CD CE NZ REMARK 480 LYS A 403 CD CE NZ REMARK 480 LYS A 412 CD CE NZ REMARK 480 GLU A 413 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 534 O HOH A 637 1.77 REMARK 500 SG CYS A 276 O HOH A 598 1.86 REMARK 500 NH1 ARG A 390 O HOH A 496 1.94 REMARK 500 SG CYS A 294 O HOH A 631 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 413 CG GLU A 413 CD -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 321 24.59 -144.71 REMARK 500 SER A 380 78.59 -117.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 362 NE2 REMARK 620 2 CYS A 402 SG 111.5 REMARK 620 3 HIS A 408 NE2 108.5 106.6 REMARK 620 4 HIS A 410 NE2 114.1 113.5 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 347 NE2 REMARK 620 2 HIS A 349 NE2 102.5 REMARK 620 3 ASP A 360 OD2 106.5 121.3 REMARK 620 4 HOH A 517 O 106.3 103.4 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR A 437 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 705 O REMARK 620 2 HOH A 706 O 160.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZNV RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH UBIQUITIN DBREF 2ZNR A 264 436 UNP Q96FJ0 STALP_HUMAN 264 436 SEQADV 2ZNR GLY A 259 UNP Q96FJ0 EXPRESSION TAG SEQADV 2ZNR PRO A 260 UNP Q96FJ0 EXPRESSION TAG SEQADV 2ZNR GLY A 261 UNP Q96FJ0 EXPRESSION TAG SEQADV 2ZNR HIS A 262 UNP Q96FJ0 EXPRESSION TAG SEQADV 2ZNR MET A 263 UNP Q96FJ0 EXPRESSION TAG SEQRES 1 A 178 GLY PRO GLY HIS MET GLU GLY LEU ARG CYS VAL VAL LEU SEQRES 2 A 178 PRO GLU ASP LEU CYS HIS LYS PHE LEU GLN LEU ALA GLU SEQRES 3 A 178 SER ASN THR VAL ARG GLY ILE GLU THR CYS GLY ILE LEU SEQRES 4 A 178 CYS GLY LYS LEU THR HIS ASN GLU PHE THR ILE THR HIS SEQRES 5 A 178 VAL ILE VAL PRO LYS GLN SER ALA GLY PRO ASP TYR CYS SEQRES 6 A 178 ASP MET GLU ASN VAL GLU GLU LEU PHE ASN VAL GLN ASP SEQRES 7 A 178 GLN HIS ASP LEU LEU THR LEU GLY TRP ILE HIS THR HIS SEQRES 8 A 178 PRO THR GLN THR ALA PHE LEU SER SER VAL ASP LEU HIS SEQRES 9 A 178 THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA ILE SEQRES 10 A 178 ALA ILE VAL CYS SER PRO LYS HIS LYS ASP THR GLY ILE SEQRES 11 A 178 PHE ARG LEU THR ASN ALA GLY MET LEU GLU VAL SER ALA SEQRES 12 A 178 CYS LYS LYS LYS GLY PHE HIS PRO HIS THR LYS GLU PRO SEQRES 13 A 178 ARG LEU PHE SER ILE CYS LYS HIS VAL LEU VAL LYS ASP SEQRES 14 A 178 ILE LYS ILE ILE VAL LEU ASP LEU ARG HET ZN A 1 1 HET ZN A 2 1 HET PR A 437 1 HET EDO A 438 4 HET EDO A 439 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HETNAM ZN ZINC ION HETNAM PR PRASEODYMIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 PR PR 3+ FORMUL 5 EDO 7(C2 H6 O2) FORMUL 12 HOH *269(H2 O) HELIX 1 1 ASP A 274 VAL A 288 1 15 HELIX 2 2 ASN A 327 ASP A 339 1 13 HELIX 3 3 SER A 357 LEU A 371 1 15 HELIX 4 4 PRO A 381 LYS A 384 5 4 HELIX 5 5 THR A 392 CYS A 402 1 11 SHEET 1 A 8 PHE A 417 ILE A 419 0 SHEET 2 A 8 ASP A 385 LEU A 391 -1 N ARG A 390 O SER A 418 SHEET 3 A 8 ILE A 375 SER A 380 -1 N ALA A 376 O PHE A 389 SHEET 4 A 8 LEU A 341 THR A 348 1 N TRP A 345 O ILE A 377 SHEET 5 A 8 CYS A 294 THR A 302 -1 N LEU A 297 O LEU A 343 SHEET 6 A 8 GLU A 305 VAL A 313 -1 O ILE A 312 N ILE A 296 SHEET 7 A 8 VAL A 269 PRO A 272 1 N VAL A 270 O ILE A 308 SHEET 8 A 8 VAL A 423 LYS A 426 1 O LEU A 424 N LEU A 271 SHEET 1 B 7 PHE A 417 ILE A 419 0 SHEET 2 B 7 ASP A 385 LEU A 391 -1 N ARG A 390 O SER A 418 SHEET 3 B 7 ILE A 375 SER A 380 -1 N ALA A 376 O PHE A 389 SHEET 4 B 7 LEU A 341 THR A 348 1 N TRP A 345 O ILE A 377 SHEET 5 B 7 CYS A 294 THR A 302 -1 N LEU A 297 O LEU A 343 SHEET 6 B 7 GLU A 305 VAL A 313 -1 O ILE A 312 N ILE A 296 SHEET 7 B 7 ILE A 431 ASP A 434 1 O LEU A 433 N VAL A 311 SHEET 1 C 2 GLN A 316 GLY A 319 0 SHEET 2 C 2 TYR A 322 MET A 325 -1 O ASP A 324 N SER A 317 LINK ZN ZN A 1 NE2 HIS A 362 1555 1555 2.04 LINK ZN ZN A 1 SG CYS A 402 1555 1555 2.29 LINK ZN ZN A 1 NE2 HIS A 408 1555 1555 2.02 LINK ZN ZN A 1 NE2 HIS A 410 1555 1555 2.05 LINK ZN ZN A 2 NE2 HIS A 347 1555 1555 2.04 LINK ZN ZN A 2 NE2 HIS A 349 1555 1555 2.02 LINK ZN ZN A 2 OD2 ASP A 360 1555 1555 1.94 LINK ZN ZN A 2 O HOH A 517 1555 1555 1.92 LINK PR PR A 437 O HOH A 705 1555 1555 1.11 LINK PR PR A 437 O HOH A 706 1555 1555 1.31 CISPEP 1 GLU A 413 PRO A 414 0 2.45 SITE 1 AC1 4 HIS A 362 CYS A 402 HIS A 408 HIS A 410 SITE 1 AC2 4 HIS A 347 HIS A 349 ASP A 360 HOH A 517 SITE 1 AC3 6 ASP A 274 ASP A 427 HOH A 705 HOH A 706 SITE 2 AC3 6 HOH A 707 HOH A 708 SITE 1 AC4 6 TYR A 322 ASP A 324 LYS A 429 HOH A 454 SITE 2 AC4 6 HOH A 538 HOH A 630 SITE 1 AC5 5 LEU A 271 PRO A 272 GLU A 273 LEU A 275 SITE 2 AC5 5 CYS A 276 SITE 1 AC6 5 CYS A 420 VAL A 423 HOH A 469 HOH A 470 SITE 2 AC6 5 HOH A 557 SITE 1 AC7 6 HIS A 262 GLU A 264 THR A 307 HOH A 458 SITE 2 AC7 6 HOH A 490 HOH A 536 SITE 1 AC8 5 ARG A 267 ASN A 304 LEU A 369 HOH A 477 SITE 2 AC8 5 HOH A 656 SITE 1 AC9 4 GLU A 284 GLU A 305 HOH A 606 HOH A 655 SITE 1 BC1 4 LYS A 315 PRO A 409 ARG A 436 HOH A 519 CRYST1 81.865 81.865 64.693 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012215 0.007052 0.000000 0.00000 SCALE2 0.000000 0.014105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015458 0.00000