HEADER TOXIN 29-SEP-08 2ZTB TITLE CRYSTAL STRUCTURE OF THE PARASPORIN-2 BACILLUS THURINGIENSIS TOXIN TITLE 2 THAT RECOGNIZES CANCER CELLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYSTAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE PROTEOLYTICALLY ACTIVATED FORM, UNP RESIDUES 52-302; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THURINGIENSIS SEROVAR DAKOTA; SOURCE 3 ORGANISM_TAXID: 132268; SOURCE 4 STRAIN: A1547; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-23A KEYWDS BETA-HAIRPIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.AKIBA REVDAT 4 13-MAR-24 2ZTB 1 SEQADV REVDAT 3 13-JUL-11 2ZTB 1 VERSN REVDAT 2 24-MAR-09 2ZTB 1 JRNL REVDAT 1 13-JAN-09 2ZTB 0 JRNL AUTH T.AKIBA,Y.ABE,S.KITADA,Y.KUSAKA,A.ITO,T.ICHIMATSU, JRNL AUTH 2 H.KATAYAMA,T.AKAO,K.HIGUCHI,E.MIZUKI,M.OHBA,R.KANAI,K.HARATA JRNL TITL CRYSTAL STRUCTURE OF THE PARASPORIN-2 BACILLUS THURINGIENSIS JRNL TITL 2 TOXIN THAT RECOGNIZES CANCER CELLS JRNL REF J.MOL.BIOL. V. 386 121 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19094993 JRNL DOI 10.1016/J.JMB.2008.12.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.AKIBA,Y.ABE,S.KITADA,Y.KUSAKA,A.ITO,T.ICHIMATSU, REMARK 1 AUTH 2 H.KATAYAMA,T.AKAO,K.HIGUCHI,E.MIZUKI,M.OHBA,R.KANAI,K.HARATA REMARK 1 TITL CRYSTALLIZATION OF PARASPORIN-2, A BACILLUS THURINGIENSIS REMARK 1 TITL 2 CRYSTAL PROTEIN WITH SELECTIVE CYTOCIDAL ACTIVITY AGAINST REMARK 1 TITL 3 HUMAN CELLS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2355 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15583389 REMARK 1 DOI 10.1107/S0907444904026307 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.ITO,Y.SASAGURI,S.KITADA,Y.KUSAKA,K.KUWANO,K.MASUTOMI, REMARK 1 AUTH 2 E.MIZUKI,T.AKAO,M.OHBA REMARK 1 TITL A BACILLUS THURINGIENSIS CRYSTAL PROTEIN WITH SELECTIVE REMARK 1 TITL 2 CYTOCIDAL ACTION TO HUMAN CELLS REMARK 1 REF J.BIOL.CHEM. V. 279 21282 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15026424 REMARK 1 DOI 10.1074/JBC.M401881200 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 389 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3910 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5328 ; 1.337 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;38.129 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;14.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.419 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2928 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1526 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2703 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 0.615 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4062 ; 1.076 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 1.643 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1266 ; 2.605 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1510 57.1520 5.0890 REMARK 3 T TENSOR REMARK 3 T11: -0.2612 T22: 0.0350 REMARK 3 T33: -0.3162 T12: 0.0522 REMARK 3 T13: -0.0229 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 14.5486 L22: 1.7757 REMARK 3 L33: 0.0687 L12: -4.2846 REMARK 3 L13: -0.4391 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: -0.7592 S13: 0.4045 REMARK 3 S21: 0.0529 S22: 0.1427 S23: -0.2077 REMARK 3 S31: 0.1435 S32: 0.1025 S33: 0.0521 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 298 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1730 23.8070 11.7060 REMARK 3 T TENSOR REMARK 3 T11: -0.2423 T22: -0.2158 REMARK 3 T33: -0.3076 T12: 0.0245 REMARK 3 T13: 0.0083 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.4027 L22: 5.0241 REMARK 3 L33: 0.6165 L12: -2.4067 REMARK 3 L13: -0.2214 L23: 0.2508 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.0729 S13: -0.0065 REMARK 3 S21: 0.0747 S22: -0.0794 S23: 0.0806 REMARK 3 S31: 0.0380 S32: -0.2110 S33: 0.1572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000028398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3403, 1.3408, 1.3460 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50770 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 29.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (V/V) ETHYLENE GLYCOL, 8% (W/V) REMARK 280 PEG 3350, 1MM TCEP, 50MM HEPES-NAOH, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.51200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.75600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.63400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.87800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 51 REMARK 465 LEU A 299 REMARK 465 ASP A 300 REMARK 465 GLU A 301 REMARK 465 GLN A 302 REMARK 465 LEU B 299 REMARK 465 ASP B 300 REMARK 465 GLU B 301 REMARK 465 GLN B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 76 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 -112.75 46.32 REMARK 500 PHE A 96 -151.25 62.26 REMARK 500 LYS A 171 76.17 -119.50 REMARK 500 PRO A 215 170.62 -57.80 REMARK 500 ALA A 216 -73.47 -37.90 REMARK 500 GLN A 217 71.58 -116.44 REMARK 500 ASN B 91 -120.14 51.65 REMARK 500 PHE B 96 -152.12 69.53 REMARK 500 PRO B 215 172.44 -55.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU A1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1009 DBREF 2ZTB A 52 302 UNP Q7WZI1 Q7WZI1_BACUA 52 302 DBREF 2ZTB B 52 302 UNP Q7WZI1 Q7WZI1_BACUA 52 302 SEQADV 2ZTB MET A 51 UNP Q7WZI1 INITIATING METHIONINE SEQADV 2ZTB MET B 51 UNP Q7WZI1 INITIATING METHIONINE SEQRES 1 A 252 MET ASP VAL ILE ARG GLU TYR LEU MET PHE ASN GLU LEU SEQRES 2 A 252 SER ALA LEU SER SER SER PRO GLU SER VAL ARG SER ARG SEQRES 3 A 252 PHE SER SER ILE TYR GLY THR ASN PRO ASP GLY ILE ALA SEQRES 4 A 252 LEU ASN ASN GLU THR TYR PHE ASN ALA VAL LYS PRO PRO SEQRES 5 A 252 ILE THR ALA GLN TYR GLY TYR TYR CYS TYR LYS ASN VAL SEQRES 6 A 252 GLY THR VAL GLN TYR VAL ASN ARG PRO THR ASP ILE ASN SEQRES 7 A 252 PRO ASN VAL ILE LEU ALA GLN ASP THR LEU THR ASN ASN SEQRES 8 A 252 THR ASN GLU PRO PHE THR THR THR ILE THR ILE THR GLY SEQRES 9 A 252 SER PHE THR ASN THR SER THR VAL THR SER SER THR THR SEQRES 10 A 252 THR GLY PHE LYS PHE THR SER LYS LEU SER ILE LYS LYS SEQRES 11 A 252 VAL PHE GLU ILE GLY GLY GLU VAL SER PHE SER THR THR SEQRES 12 A 252 ILE GLY THR SER GLU THR THR THR GLU THR ILE THR VAL SEQRES 13 A 252 SER LYS SER VAL THR VAL THR VAL PRO ALA GLN SER ARG SEQRES 14 A 252 ARG THR ILE GLN LEU THR ALA LYS ILE ALA LYS GLU SER SEQRES 15 A 252 ALA ASP PHE SER ALA PRO ILE THR VAL ASP GLY TYR PHE SEQRES 16 A 252 GLY ALA ASN PHE PRO LYS ARG VAL GLY PRO GLY GLY HIS SEQRES 17 A 252 TYR PHE TRP PHE ASN PRO ALA ARG ASP VAL LEU ASN THR SEQRES 18 A 252 THR SER GLY THR LEU ARG GLY THR VAL THR ASN VAL SER SEQRES 19 A 252 SER PHE ASP PHE GLN THR ILE VAL GLN PRO ALA ARG SER SEQRES 20 A 252 LEU LEU ASP GLU GLN SEQRES 1 B 252 MET ASP VAL ILE ARG GLU TYR LEU MET PHE ASN GLU LEU SEQRES 2 B 252 SER ALA LEU SER SER SER PRO GLU SER VAL ARG SER ARG SEQRES 3 B 252 PHE SER SER ILE TYR GLY THR ASN PRO ASP GLY ILE ALA SEQRES 4 B 252 LEU ASN ASN GLU THR TYR PHE ASN ALA VAL LYS PRO PRO SEQRES 5 B 252 ILE THR ALA GLN TYR GLY TYR TYR CYS TYR LYS ASN VAL SEQRES 6 B 252 GLY THR VAL GLN TYR VAL ASN ARG PRO THR ASP ILE ASN SEQRES 7 B 252 PRO ASN VAL ILE LEU ALA GLN ASP THR LEU THR ASN ASN SEQRES 8 B 252 THR ASN GLU PRO PHE THR THR THR ILE THR ILE THR GLY SEQRES 9 B 252 SER PHE THR ASN THR SER THR VAL THR SER SER THR THR SEQRES 10 B 252 THR GLY PHE LYS PHE THR SER LYS LEU SER ILE LYS LYS SEQRES 11 B 252 VAL PHE GLU ILE GLY GLY GLU VAL SER PHE SER THR THR SEQRES 12 B 252 ILE GLY THR SER GLU THR THR THR GLU THR ILE THR VAL SEQRES 13 B 252 SER LYS SER VAL THR VAL THR VAL PRO ALA GLN SER ARG SEQRES 14 B 252 ARG THR ILE GLN LEU THR ALA LYS ILE ALA LYS GLU SER SEQRES 15 B 252 ALA ASP PHE SER ALA PRO ILE THR VAL ASP GLY TYR PHE SEQRES 16 B 252 GLY ALA ASN PHE PRO LYS ARG VAL GLY PRO GLY GLY HIS SEQRES 17 B 252 TYR PHE TRP PHE ASN PRO ALA ARG ASP VAL LEU ASN THR SEQRES 18 B 252 THR SER GLY THR LEU ARG GLY THR VAL THR ASN VAL SER SEQRES 19 B 252 SER PHE ASP PHE GLN THR ILE VAL GLN PRO ALA ARG SER SEQRES 20 B 252 LEU LEU ASP GLU GLN HET LU A1001 1 HET LU A1003 1 HET GOL A1005 6 HET EDO A1007 4 HET EDO A1008 4 HET EDO A1010 4 HET LU B1002 1 HET CL B1004 1 HET GOL B1006 6 HET EDO B1009 4 HETNAM LU LUTETIUM (III) ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN LU LU HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 LU 3(LU 3+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 10 CL CL 1- FORMUL 13 HOH *290(H2 O) HELIX 1 1 MET A 59 SER A 67 5 9 HELIX 2 2 SER A 69 GLY A 82 1 14 HELIX 3 3 PRO A 102 TYR A 107 1 6 HELIX 4 4 ALA A 265 LEU A 269 1 5 HELIX 5 5 MET B 59 SER B 67 5 9 HELIX 6 6 SER B 69 GLY B 82 1 14 HELIX 7 7 PRO B 102 GLY B 108 1 7 HELIX 8 8 ARG B 266 VAL B 268 5 3 SHEET 1 A 4 ILE A 54 TYR A 57 0 SHEET 2 A 4 CYS A 111 VAL A 115 -1 O LYS A 113 N GLU A 56 SHEET 3 A 4 SER A 218 VAL A 253 -1 O ASP A 242 N TYR A 112 SHEET 4 A 4 ARG A 296 SER A 297 -1 O ARG A 296 N ARG A 219 SHEET 1 B 4 ILE A 54 TYR A 57 0 SHEET 2 B 4 CYS A 111 VAL A 115 -1 O LYS A 113 N GLU A 56 SHEET 3 B 4 SER A 218 VAL A 253 -1 O ASP A 242 N TYR A 112 SHEET 4 B 4 ASP A 126 ASN A 140 -1 N LEU A 133 O LEU A 224 SHEET 1 C 3 ARG A 296 SER A 297 0 SHEET 2 C 3 SER A 218 VAL A 253 -1 N ARG A 219 O ARG A 296 SHEET 3 C 3 GLN A 119 ASN A 122 -1 N VAL A 121 O ASP A 234 SHEET 1 D 9 GLN A 119 ASN A 122 0 SHEET 2 D 9 SER A 273 VAL A 292 0 SHEET 3 D 9 PHE A 146 THR A 166 -1 N THR A 159 O VAL A 283 SHEET 4 D 9 SER A 197 VAL A 214 -1 O ILE A 204 N PHE A 156 SHEET 5 D 9 SER B 197 VAL B 214 -1 O SER B 207 N THR A 205 SHEET 6 D 9 PHE B 146 THR B 166 -1 N ILE B 150 O VAL B 210 SHEET 7 D 9 SER B 273 VAL B 292 -1 O ARG B 277 N SER B 165 SHEET 8 D 9 SER B 218 VAL B 253 -1 N LYS B 227 O PHE B 286 SHEET 9 D 9 ARG B 296 SER B 297 -1 O ARG B 296 N ARG B 219 SHEET 1 E 3 ARG B 296 SER B 297 0 SHEET 2 E 3 SER B 218 VAL B 253 -1 N ARG B 219 O ARG B 296 SHEET 3 E 3 SER B 273 VAL B 292 -1 O PHE B 286 N LYS B 227 SHEET 1 F 3 SER B 273 VAL B 292 0 SHEET 2 F 3 SER B 218 VAL B 253 -1 N LYS B 227 O PHE B 286 SHEET 3 F 3 HIS B 258 PRO B 264 -1 O HIS B 258 N VAL B 253 SHEET 1 G 3 HIS B 258 PRO B 264 0 SHEET 2 G 3 SER B 218 VAL B 253 -1 N VAL B 253 O HIS B 258 SHEET 3 G 3 GLN B 119 THR B 139 -1 N LEU B 133 O LEU B 224 SHEET 1 H 4 GLN B 119 THR B 139 0 SHEET 2 H 4 SER B 218 VAL B 253 -1 O LEU B 224 N LEU B 133 SHEET 3 H 4 CYS B 111 GLY B 116 -1 N ASN B 114 O THR B 240 SHEET 4 H 4 ASP B 52 TYR B 57 -1 N GLU B 56 O LYS B 113 SHEET 1 I 5 ASP B 52 TYR B 57 0 SHEET 2 I 5 CYS B 111 GLY B 116 -1 O LYS B 113 N GLU B 56 SHEET 3 I 5 SER B 218 VAL B 253 -1 O THR B 240 N ASN B 114 SHEET 4 I 5 GLY B 87 LEU B 90 -1 N ALA B 89 O GLY B 246 SHEET 5 I 5 GLU B 93 PHE B 96 -1 O GLU B 93 N LEU B 90 SHEET 1 J12 GLU B 93 PHE B 96 0 SHEET 2 J12 GLY B 87 LEU B 90 -1 N LEU B 90 O GLU B 93 SHEET 3 J12 SER B 218 VAL B 253 -1 O GLY B 246 N ALA B 89 SHEET 4 J12 SER B 273 VAL B 292 -1 O PHE B 286 N LYS B 227 SHEET 5 J12 PHE B 146 THR B 166 -1 N SER B 165 O ARG B 277 SHEET 6 J12 SER B 197 VAL B 214 -1 O VAL B 210 N ILE B 150 SHEET 7 J12 SER A 197 VAL A 214 -1 N THR A 205 O SER B 207 SHEET 8 J12 PHE A 146 THR A 166 -1 N PHE A 156 O ILE A 204 SHEET 9 J12 SER A 273 VAL A 292 -1 O VAL A 283 N THR A 159 SHEET 10 J12 SER A 218 VAL A 253 -1 N LYS A 227 O PHE A 286 SHEET 11 J12 GLY A 87 LEU A 90 -1 N ALA A 89 O GLY A 246 SHEET 12 J12 GLU A 93 PHE A 96 -1 O GLU A 93 N LEU A 90 SHEET 1 K 4 GLU A 93 PHE A 96 0 SHEET 2 K 4 GLY A 87 LEU A 90 -1 N LEU A 90 O GLU A 93 SHEET 3 K 4 SER A 218 VAL A 253 -1 O GLY A 246 N ALA A 89 SHEET 4 K 4 HIS A 258 PRO A 264 -1 O HIS A 258 N VAL A 253 SHEET 1 L 2 LEU A 176 PHE A 182 0 SHEET 2 L 2 GLY A 186 THR A 192 -1 O THR A 192 N LEU A 176 SHEET 1 M 2 LEU B 176 PHE B 182 0 SHEET 2 M 2 GLY B 186 THR B 192 -1 O VAL B 188 N LYS B 180 CISPEP 1 LYS A 100 PRO A 101 0 -5.74 CISPEP 2 LYS B 100 PRO B 101 0 -6.66 SITE 1 AC1 2 LU A1003 LU B1002 SITE 1 AC2 2 LU A1001 LU B1002 SITE 1 AC3 6 TYR A 107 GLY A 108 TYR A 109 GLU B 56 SITE 2 AC3 6 TYR B 57 GOL B1006 SITE 1 AC4 5 THR A 153 THR A 205 SER A 207 THR B 205 SITE 2 AC4 5 SER B 207 SITE 1 AC5 5 ASP A 136 ILE A 152 THR A 153 SER B 75 SITE 2 AC5 5 SER B 79 SITE 1 AC6 6 THR A 166 GLY A 169 PHE A 170 THR B 161 SITE 2 AC6 6 SER B 197 THR B 199 SITE 1 AC7 2 LU A1001 LU A1003 SITE 1 AC8 1 HOH B2002 SITE 1 AC9 7 TYR A 107 GLY A 108 TYR A 110 GOL A1005 SITE 2 AC9 7 THR B 173 SER B 174 LYS B 175 SITE 1 BC1 6 SER A 197 HOH A2024 SER B 165 THR B 166 SITE 2 BC1 6 PHE B 170 GLY B 195 CRYST1 136.829 136.829 119.268 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007308 0.004219 0.000000 0.00000 SCALE2 0.000000 0.008439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008384 0.00000