HEADER TRANSFERASE 14-OCT-08 2ZU8 TITLE CRYSTAL STRUCTURE OF MANNOSYL-3-PHOSPHOGLYCERATE SYNTHASE FROM TITLE 2 PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-3-PHOSPHOGLYCERATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPG SYNTHASE, MPGS; COMPND 5 EC: 2.4.1.217; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0927; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GT-A FOLD, GLYCOSYLTRANSFERASE, GT55, GDP-MANNOSE, CYTOPLASM, KEYWDS 2 MAGNESIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KAWAMURA,N.WATANABE,I.TANAKA REVDAT 3 15-NOV-23 2ZU8 1 REMARK REVDAT 2 01-NOV-23 2ZU8 1 REMARK LINK REVDAT 1 27-OCT-09 2ZU8 0 JRNL AUTH T.KAWAMURA,N.WATANABE,I.TANAKA JRNL TITL CRYSTAL STRUCTURE OF MANNOSYL-3-PHOSPHOGLYCERATE SYNTHASE JRNL TITL 2 FROM PYROCOCCUS HORIKOSHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1908905.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 27650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3585 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 190 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.54000 REMARK 3 B22 (A**2) : 15.19000 REMARK 3 B33 (A**2) : -9.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.860 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.340 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 24.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND:GDD.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND:GDD.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000028431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24500 REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.05M SODIUM ACETATE, 0.1MM REMARK 280 GDP-MANNOSE, PH 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.49650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 29 REMARK 465 THR A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 ARG A 203 REMARK 465 HIS A 204 REMARK 465 LYS A 205 REMARK 465 PRO A 206 REMARK 465 LYS A 207 REMARK 465 VAL A 208 REMARK 465 THR A 209 REMARK 465 LYS A 210 REMARK 465 GLY A 211 REMARK 465 THR A 212 REMARK 465 LEU A 213 REMARK 465 TYR A 214 REMARK 465 PHE A 215 REMARK 465 LYS A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 359 REMARK 465 GLU A 360 REMARK 465 GLU B 29 REMARK 465 THR B 30 REMARK 465 GLU B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 PRO B 34 REMARK 465 ILE B 35 REMARK 465 TYR B 36 REMARK 465 ARG B 203 REMARK 465 HIS B 204 REMARK 465 LYS B 205 REMARK 465 PRO B 206 REMARK 465 LYS B 207 REMARK 465 VAL B 208 REMARK 465 THR B 209 REMARK 465 LYS B 210 REMARK 465 GLY B 211 REMARK 465 THR B 212 REMARK 465 LEU B 213 REMARK 465 TYR B 214 REMARK 465 PHE B 215 REMARK 465 LYS B 216 REMARK 465 LYS B 217 REMARK 465 TRP B 218 REMARK 465 GLY B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 357 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 ILE A 373 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 136 -169.77 -78.17 REMARK 500 ASP A 170 46.19 -88.31 REMARK 500 THR A 242 25.44 -146.47 REMARK 500 ASN A 248 47.40 -107.71 REMARK 500 PHE A 291 45.51 -147.91 REMARK 500 ASP A 351 -17.81 -45.99 REMARK 500 GLU A 357 33.84 140.69 REMARK 500 GLU A 393 28.36 46.56 REMARK 500 PRO B 6 73.28 -69.64 REMARK 500 LYS B 9 175.93 174.10 REMARK 500 ASP B 136 -159.11 -77.51 REMARK 500 SER B 234 5.67 -67.87 REMARK 500 THR B 242 -5.39 -141.88 REMARK 500 ASN B 358 57.68 -148.80 REMARK 500 ILE B 370 -5.71 -55.88 REMARK 500 ASN B 385 -0.06 -140.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 356 -13.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD B 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD A 395 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZU7 RELATED DB: PDB REMARK 900 RELATED ID: 2ZU9 RELATED DB: PDB DBREF 2ZU8 A 1 394 UNP O58689 MPGS_PYRHO 1 394 DBREF 2ZU8 B 1 394 UNP O58689 MPGS_PYRHO 1 394 SEQRES 1 A 394 MSE LEU LEU GLU ALA PRO VAL TYR LYS GLU ILE PHE GLY SEQRES 2 A 394 ALA VAL THR ILE HIS GLU VAL GLN LYS VAL ILE LYS MSE SEQRES 3 A 394 ASP THR GLU THR GLU GLU VAL PRO ILE TYR THR ILE SER SEQRES 4 A 394 ASN ILE PRO ARG GLU LYS ILE TYR ASP LEU LEU GLY LYS SEQRES 5 A 394 MSE ALA VAL ILE VAL PRO MSE LYS ASN GLU LYS LEU HIS SEQRES 6 A 394 LEU VAL ASP GLY VAL LEU LYS ALA ILE PRO HIS LYS CYS SEQRES 7 A 394 PRO ILE ILE ILE VAL SER ASN SER LYS ARG GLU GLY PRO SEQRES 8 A 394 ASN ARG TYR LYS LEU GLU VAL ASP LEU ILE ARG HIS PHE SEQRES 9 A 394 TYR ASN LEU THR HIS SER LYS ILE ILE MSE ILE HIS GLN SEQRES 10 A 394 LYS ASP PRO GLY LEU ALA LYS ALA PHE LYS GLU VAL GLY SEQRES 11 A 394 TYR THR ASP ILE LEU ASP GLU ASN GLY MSE ILE ARG SER SEQRES 12 A 394 GLY LYS GLY GLU GLY MSE LEU VAL GLY LEU LEU LEU ALA SEQRES 13 A 394 LYS ALA ILE GLY ALA GLU TYR VAL GLY PHE VAL ASP ALA SEQRES 14 A 394 ASP ASN TYR ILE PRO GLY ALA VAL ASN GLU TYR VAL LYS SEQRES 15 A 394 ASP TYR ALA ALA GLY PHE LEU MSE SER GLU SER GLU TYR SEQRES 16 A 394 THR MSE VAL ARG LEU HIS TRP ARG HIS LYS PRO LYS VAL SEQRES 17 A 394 THR LYS GLY THR LEU TYR PHE LYS LYS TRP GLY ARG VAL SEQRES 18 A 394 SER GLU ILE THR ASN HIS TYR LEU ASN LEU LEU VAL SER SEQRES 19 A 394 GLU HIS THR ALA PHE GLU THR THR ILE MSE VAL THR GLY SEQRES 20 A 394 ASN ALA GLY GLU HIS ALA MSE THR MSE LYS LEU ALA GLU SEQRES 21 A 394 ILE LEU PRO PHE SER THR GLY TYR SER ILE GLU PRO TYR SEQRES 22 A 394 GLU ILE VAL TYR ILE LEU GLU ARG PHE GLY LYS TRP GLU SEQRES 23 A 394 ASN VAL GLU GLU PHE LYS ASP VAL PHE ASP GLN GLY ILE SEQRES 24 A 394 GLU ILE PHE GLN ILE GLU THR LEU ASN PRO HIS PHE HIS SEQRES 25 A 394 GLU ASP LYS GLY LYS GLU HIS VAL LYS GLU MSE LEU LEU SEQRES 26 A 394 LEU SER LEU ALA THR ILE TYR HIS SER LYS LEU ALA THR SEQRES 27 A 394 ASP ASN LEU ARG LYS ARG ILE LEU LYS ASP LEU ARG ASP SEQRES 28 A 394 HIS GLY ILE LEU GLY GLU ASN GLU GLU PRO PRO LYS PRO SEQRES 29 A 394 LEU VAL MSE ARG PRO ILE LYS GLU ILE PRO ILE LYS GLU SEQRES 30 A 394 TRP MSE ASP ILE VAL GLU GLY ASN SER GLU THR LEU LEU SEQRES 31 A 394 ARG PHE GLU LEU SEQRES 1 B 394 MSE LEU LEU GLU ALA PRO VAL TYR LYS GLU ILE PHE GLY SEQRES 2 B 394 ALA VAL THR ILE HIS GLU VAL GLN LYS VAL ILE LYS MSE SEQRES 3 B 394 ASP THR GLU THR GLU GLU VAL PRO ILE TYR THR ILE SER SEQRES 4 B 394 ASN ILE PRO ARG GLU LYS ILE TYR ASP LEU LEU GLY LYS SEQRES 5 B 394 MSE ALA VAL ILE VAL PRO MSE LYS ASN GLU LYS LEU HIS SEQRES 6 B 394 LEU VAL ASP GLY VAL LEU LYS ALA ILE PRO HIS LYS CYS SEQRES 7 B 394 PRO ILE ILE ILE VAL SER ASN SER LYS ARG GLU GLY PRO SEQRES 8 B 394 ASN ARG TYR LYS LEU GLU VAL ASP LEU ILE ARG HIS PHE SEQRES 9 B 394 TYR ASN LEU THR HIS SER LYS ILE ILE MSE ILE HIS GLN SEQRES 10 B 394 LYS ASP PRO GLY LEU ALA LYS ALA PHE LYS GLU VAL GLY SEQRES 11 B 394 TYR THR ASP ILE LEU ASP GLU ASN GLY MSE ILE ARG SER SEQRES 12 B 394 GLY LYS GLY GLU GLY MSE LEU VAL GLY LEU LEU LEU ALA SEQRES 13 B 394 LYS ALA ILE GLY ALA GLU TYR VAL GLY PHE VAL ASP ALA SEQRES 14 B 394 ASP ASN TYR ILE PRO GLY ALA VAL ASN GLU TYR VAL LYS SEQRES 15 B 394 ASP TYR ALA ALA GLY PHE LEU MSE SER GLU SER GLU TYR SEQRES 16 B 394 THR MSE VAL ARG LEU HIS TRP ARG HIS LYS PRO LYS VAL SEQRES 17 B 394 THR LYS GLY THR LEU TYR PHE LYS LYS TRP GLY ARG VAL SEQRES 18 B 394 SER GLU ILE THR ASN HIS TYR LEU ASN LEU LEU VAL SER SEQRES 19 B 394 GLU HIS THR ALA PHE GLU THR THR ILE MSE VAL THR GLY SEQRES 20 B 394 ASN ALA GLY GLU HIS ALA MSE THR MSE LYS LEU ALA GLU SEQRES 21 B 394 ILE LEU PRO PHE SER THR GLY TYR SER ILE GLU PRO TYR SEQRES 22 B 394 GLU ILE VAL TYR ILE LEU GLU ARG PHE GLY LYS TRP GLU SEQRES 23 B 394 ASN VAL GLU GLU PHE LYS ASP VAL PHE ASP GLN GLY ILE SEQRES 24 B 394 GLU ILE PHE GLN ILE GLU THR LEU ASN PRO HIS PHE HIS SEQRES 25 B 394 GLU ASP LYS GLY LYS GLU HIS VAL LYS GLU MSE LEU LEU SEQRES 26 B 394 LEU SER LEU ALA THR ILE TYR HIS SER LYS LEU ALA THR SEQRES 27 B 394 ASP ASN LEU ARG LYS ARG ILE LEU LYS ASP LEU ARG ASP SEQRES 28 B 394 HIS GLY ILE LEU GLY GLU ASN GLU GLU PRO PRO LYS PRO SEQRES 29 B 394 LEU VAL MSE ARG PRO ILE LYS GLU ILE PRO ILE LYS GLU SEQRES 30 B 394 TRP MSE ASP ILE VAL GLU GLY ASN SER GLU THR LEU LEU SEQRES 31 B 394 ARG PHE GLU LEU MODRES 2ZU8 MSE A 1 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 26 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 53 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 59 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 114 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 140 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 149 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 190 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 197 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 244 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 254 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 256 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 323 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 367 MET SELENOMETHIONINE MODRES 2ZU8 MSE A 379 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 1 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 26 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 53 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 59 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 114 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 140 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 149 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 190 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 197 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 244 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 254 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 256 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 323 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 367 MET SELENOMETHIONINE MODRES 2ZU8 MSE B 379 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 53 8 HET MSE A 59 8 HET MSE A 114 8 HET MSE A 140 8 HET MSE A 149 8 HET MSE A 190 8 HET MSE A 197 8 HET MSE A 244 8 HET MSE A 254 8 HET MSE A 256 8 HET MSE A 323 8 HET MSE A 367 8 HET MSE A 379 8 HET MSE B 1 8 HET MSE B 26 8 HET MSE B 53 8 HET MSE B 59 8 HET MSE B 114 8 HET MSE B 140 8 HET MSE B 149 8 HET MSE B 190 8 HET MSE B 197 8 HET MSE B 244 8 HET MSE B 254 8 HET MSE B 256 8 HET MSE B 323 8 HET MSE B 367 8 HET MSE B 379 8 HET GDD A 395 39 HET GDD B 395 39 HETNAM MSE SELENOMETHIONINE HETNAM GDD GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE FORMUL 1 MSE 30(C5 H11 N O2 SE) FORMUL 3 GDD 2(C16 H25 N5 O16 P2) HELIX 1 1 PRO A 42 GLY A 51 1 10 HELIX 2 2 LYS A 63 ILE A 74 1 12 HELIX 3 3 ASN A 92 HIS A 109 1 18 HELIX 4 4 ASP A 119 VAL A 129 1 11 HELIX 5 5 GLY A 144 ILE A 159 1 16 HELIX 6 6 ILE A 173 MSE A 190 1 18 HELIX 7 7 ARG A 220 ALA A 238 1 19 HELIX 8 8 MSE A 256 GLU A 260 1 5 HELIX 9 9 THR A 266 TYR A 268 5 3 HELIX 10 10 SER A 269 GLY A 283 1 15 HELIX 11 11 VAL A 288 GLU A 290 5 3 HELIX 12 12 PHE A 291 GLY A 298 1 8 HELIX 13 13 GLY A 316 HIS A 333 1 18 HELIX 14 14 THR A 338 ASP A 351 1 14 HELIX 15 15 PRO A 374 SER A 386 1 13 HELIX 16 16 PRO B 42 LEU B 50 1 9 HELIX 17 17 LYS B 63 ILE B 74 1 12 HELIX 18 18 ASN B 92 HIS B 109 1 18 HELIX 19 19 ASP B 119 VAL B 129 1 11 HELIX 20 20 GLY B 144 ILE B 159 1 16 HELIX 21 21 ILE B 173 MSE B 190 1 18 HELIX 22 22 ARG B 220 GLU B 235 1 16 HELIX 23 23 MSE B 256 GLU B 260 1 5 HELIX 24 24 SER B 269 GLY B 283 1 15 HELIX 25 25 ASN B 287 GLU B 290 5 4 HELIX 26 26 PHE B 291 GLY B 298 1 8 HELIX 27 27 GLY B 316 HIS B 333 1 18 HELIX 28 28 THR B 338 ASP B 351 1 14 HELIX 29 29 PRO B 369 ILE B 373 5 5 HELIX 30 30 PRO B 374 SER B 386 1 13 SHEET 1 A 6 LYS A 9 PHE A 12 0 SHEET 2 A 6 VAL A 15 HIS A 18 -1 O ILE A 17 N GLU A 10 SHEET 3 A 6 ILE A 299 GLU A 305 1 O ILE A 299 N THR A 16 SHEET 4 A 6 GLN A 21 LYS A 25 1 N GLN A 21 O GLU A 305 SHEET 5 A 6 LEU A 2 GLU A 4 -1 N LEU A 2 O LYS A 25 SHEET 6 A 6 ILE A 38 ASN A 40 -1 O SER A 39 N LEU A 3 SHEET 1 B10 LYS A 9 PHE A 12 0 SHEET 2 B10 VAL A 15 HIS A 18 -1 O ILE A 17 N GLU A 10 SHEET 3 B10 ILE A 299 GLU A 305 1 O ILE A 299 N THR A 16 SHEET 4 B10 TYR A 195 HIS A 201 1 N MSE A 197 O PHE A 302 SHEET 5 B10 HIS A 252 THR A 255 -1 O ALA A 253 N VAL A 198 SHEET 6 B10 TYR A 163 PHE A 166 -1 N PHE A 166 O HIS A 252 SHEET 7 B10 MSE A 53 MSE A 59 1 N ILE A 56 O GLY A 165 SHEET 8 B10 ILE A 80 SER A 84 1 O ILE A 81 N VAL A 57 SHEET 9 B10 ILE A 112 HIS A 116 1 O ILE A 113 N ILE A 82 SHEET 10 B10 LEU A 390 PHE A 392 -1 O LEU A 390 N MSE A 114 SHEET 1 C 6 LYS B 9 PHE B 12 0 SHEET 2 C 6 VAL B 15 HIS B 18 -1 O ILE B 17 N GLU B 10 SHEET 3 C 6 ILE B 299 GLU B 305 1 O ILE B 299 N THR B 16 SHEET 4 C 6 GLN B 21 LYS B 25 1 N GLN B 21 O GLU B 305 SHEET 5 C 6 LEU B 2 GLU B 4 -1 N LEU B 2 O ILE B 24 SHEET 6 C 6 ILE B 38 ASN B 40 -1 O SER B 39 N LEU B 3 SHEET 1 D10 LYS B 9 PHE B 12 0 SHEET 2 D10 VAL B 15 HIS B 18 -1 O ILE B 17 N GLU B 10 SHEET 3 D10 ILE B 299 GLU B 305 1 O ILE B 299 N THR B 16 SHEET 4 D10 TYR B 195 HIS B 201 1 N MSE B 197 O PHE B 302 SHEET 5 D10 HIS B 252 THR B 255 -1 O ALA B 253 N VAL B 198 SHEET 6 D10 TYR B 163 PHE B 166 -1 N VAL B 164 O MSE B 254 SHEET 7 D10 MSE B 53 MSE B 59 1 N ILE B 56 O GLY B 165 SHEET 8 D10 ILE B 80 SER B 84 1 O ILE B 81 N VAL B 57 SHEET 9 D10 ILE B 112 HIS B 116 1 O ILE B 113 N ILE B 82 SHEET 10 D10 LEU B 390 PHE B 392 -1 O LEU B 390 N MSE B 114 SHEET 1 E 2 PHE B 264 SER B 265 0 SHEET 2 E 2 VAL B 366 MSE B 367 -1 O MSE B 367 N PHE B 264 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C LYS A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N ASP A 27 1555 1555 1.33 LINK C LYS A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N ALA A 54 1555 1555 1.33 LINK C PRO A 58 N MSE A 59 1555 1555 1.32 LINK C MSE A 59 N LYS A 60 1555 1555 1.32 LINK C ILE A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ILE A 115 1555 1555 1.33 LINK C GLY A 139 N MSE A 140 1555 1555 1.32 LINK C MSE A 140 N ILE A 141 1555 1555 1.33 LINK C GLY A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N LEU A 150 1555 1555 1.33 LINK C LEU A 189 N MSE A 190 1555 1555 1.32 LINK C MSE A 190 N SER A 191 1555 1555 1.32 LINK C THR A 196 N MSE A 197 1555 1555 1.32 LINK C MSE A 197 N VAL A 198 1555 1555 1.33 LINK C ILE A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N VAL A 245 1555 1555 1.33 LINK C ALA A 253 N MSE A 254 1555 1555 1.32 LINK C MSE A 254 N THR A 255 1555 1555 1.33 LINK C THR A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N LYS A 257 1555 1555 1.32 LINK C GLU A 322 N MSE A 323 1555 1555 1.33 LINK C MSE A 323 N LEU A 324 1555 1555 1.33 LINK C VAL A 366 N MSE A 367 1555 1555 1.32 LINK C MSE A 367 N ARG A 368 1555 1555 1.32 LINK C TRP A 378 N MSE A 379 1555 1555 1.33 LINK C MSE A 379 N ASP A 380 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C LYS B 25 N MSE B 26 1555 1555 1.32 LINK C MSE B 26 N ASP B 27 1555 1555 1.33 LINK C LYS B 52 N MSE B 53 1555 1555 1.32 LINK C MSE B 53 N ALA B 54 1555 1555 1.33 LINK C PRO B 58 N MSE B 59 1555 1555 1.32 LINK C MSE B 59 N LYS B 60 1555 1555 1.33 LINK C ILE B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ILE B 115 1555 1555 1.32 LINK C GLY B 139 N MSE B 140 1555 1555 1.33 LINK C MSE B 140 N ILE B 141 1555 1555 1.33 LINK C GLY B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N LEU B 150 1555 1555 1.32 LINK C LEU B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N SER B 191 1555 1555 1.33 LINK C THR B 196 N MSE B 197 1555 1555 1.32 LINK C MSE B 197 N VAL B 198 1555 1555 1.33 LINK C ILE B 243 N MSE B 244 1555 1555 1.33 LINK C MSE B 244 N VAL B 245 1555 1555 1.33 LINK C ALA B 253 N MSE B 254 1555 1555 1.33 LINK C MSE B 254 N THR B 255 1555 1555 1.32 LINK C THR B 255 N MSE B 256 1555 1555 1.33 LINK C MSE B 256 N LYS B 257 1555 1555 1.33 LINK C GLU B 322 N MSE B 323 1555 1555 1.33 LINK C MSE B 323 N LEU B 324 1555 1555 1.33 LINK C VAL B 366 N MSE B 367 1555 1555 1.32 LINK C MSE B 367 N ARG B 368 1555 1555 1.33 LINK C TRP B 378 N MSE B 379 1555 1555 1.33 LINK C MSE B 379 N ASP B 380 1555 1555 1.33 CISPEP 1 GLY A 90 PRO A 91 0 -0.19 CISPEP 2 GLY B 90 PRO B 91 0 0.10 SITE 1 AC1 21 PRO B 58 MSE B 59 LYS B 60 GLU B 62 SITE 2 AC1 21 VAL B 83 ASN B 85 GLN B 117 GLY B 144 SITE 3 AC1 21 LYS B 145 ASP B 168 ALA B 169 ASP B 170 SITE 4 AC1 21 TRP B 202 ASN B 248 GLY B 250 TYR B 268 SITE 5 AC1 21 GLU B 271 HIS B 312 LYS B 315 HIS B 319 SITE 6 AC1 21 MSE B 323 SITE 1 AC2 21 PRO A 58 MSE A 59 LYS A 60 GLU A 62 SITE 2 AC2 21 VAL A 83 ASN A 85 GLN A 117 GLY A 144 SITE 3 AC2 21 LYS A 145 ASP A 168 ALA A 169 ASP A 170 SITE 4 AC2 21 TRP A 202 ASN A 248 GLY A 250 TYR A 268 SITE 5 AC2 21 GLU A 271 HIS A 312 LYS A 315 HIS A 319 SITE 6 AC2 21 MSE A 323 CRYST1 54.238 84.993 83.592 90.00 101.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018437 0.000000 0.003889 0.00000 SCALE2 0.000000 0.011766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012226 0.00000 HETATM 1 N MSE A 1 -0.674 15.210 -20.655 1.00 32.39 N HETATM 2 CA MSE A 1 -0.187 13.808 -20.755 1.00 31.81 C HETATM 3 C MSE A 1 1.297 13.760 -21.087 1.00 29.87 C HETATM 4 O MSE A 1 1.776 14.549 -21.893 1.00 28.81 O HETATM 5 CB MSE A 1 -0.992 13.067 -21.828 1.00 34.49 C HETATM 6 CG MSE A 1 -0.213 12.028 -22.608 1.00 38.32 C HETATM 7 SE MSE A 1 -1.438 10.862 -23.495 1.00 46.85 SE HETATM 8 CE MSE A 1 -0.275 9.407 -23.910 1.00 41.83 C