HEADER OXIDOREDUCTASE 18-DEC-08 2ZWU TITLE CRYSTAL STRUCTURE OF CAMPHOR SOAKED FERRIC CYTOCHROME P450CAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMPHOR 5-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450-CAM, P450CAM; COMPND 5 EC: 1.14.15.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: CYP101; SOURCE 5 GENE: CAMC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: M13TV19 KEYWDS P450CAM, MONOOXYGENASE, CAMPHOR-HYDROXYLASE, HEME, IRON, METAL- KEYWDS 2 BINDING, OXIDOREDUCTASE, SUBSTRATE-SOAKING, CYTOPLASM EXPDTA X-RAY DIFFRACTION AUTHOR K.SAKURAI,H.SHIMADA,T.HAYASHI,T.TSUKIHARA REVDAT 3 01-NOV-23 2ZWU 1 REMARK REVDAT 2 20-JUN-18 2ZWU 1 REMARK REVDAT 1 17-FEB-09 2ZWU 0 JRNL AUTH K.SAKURAI,H.SHIMADA,T.HAYASHI,T.TSUKIHARA JRNL TITL SUBSTRATE BINDING INDUCES STRUCTURAL CHANGES IN CYTOCHROME JRNL TITL 2 P450CAM JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 80 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19193991 JRNL DOI 10.1107/S1744309108044114 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 118839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 454 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 796 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3966 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 963 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5498 ; 1.500 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2507 ; 1.354 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 5.585 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;33.319 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;12.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;14.211 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4597 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 465 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1906 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1639 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2537 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1668 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 648 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.137 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 11 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2394 ; 0.575 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 856 ; 0.155 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3973 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 1.566 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1495 ; 2.340 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1 ; 0.607 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 26 ; 5.878 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000028525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : SI REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 9.4.09 REMARK 200 STARTING MODEL: PDB ENTRY 2CPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-14% PEG 4000, 50MM TRIS-HCL, 250MM REMARK 280 KCL, 1MM D-CAMPHOR, 10MM DITHIOERYTHRITOL(DTE); AFTER REMARK 280 CRYSTALLIZATION, SOAKED CAMPHOR SATURATED BUFFER FOR 2 DAYS, PH REMARK 280 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.19450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.80400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.80400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.79175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.80400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.80400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.59725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.80400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.80400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 187.79175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.80400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.80400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.59725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.19450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 277 CZ ARG A 277 NH2 0.200 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 277 NH1 - CZ - NH2 ANGL. DEV. = 22.9 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -24.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 67.22 -162.16 REMARK 500 ASN A 33 31.79 -98.09 REMARK 500 GLU A 47 -167.33 -75.38 REMARK 500 TYR A 154 -53.68 -142.94 REMARK 500 ASN A 229 53.74 34.69 REMARK 500 ASP A 251 30.55 -141.29 REMARK 500 THR A 252 -80.17 -120.74 REMARK 500 LEU A 294 -0.74 -146.46 REMARK 500 ASP A 297 -159.76 -117.66 REMARK 500 THR A 410 34.58 -66.70 REMARK 500 THR A 411 168.76 174.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 424 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 O REMARK 620 2 GLY A 93 O 85.3 REMARK 620 3 GLU A 94 O 156.9 77.5 REMARK 620 4 TYR A 96 O 101.9 85.8 92.3 REMARK 620 5 HOH A1382 O 83.9 95.2 82.3 174.2 REMARK 620 6 HOH A1389 O 101.4 168.3 98.3 83.4 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 417 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 417 NA 102.3 REMARK 620 3 HEM A 417 NB 92.3 89.0 REMARK 620 4 HEM A 417 NC 93.9 163.8 88.9 REMARK 620 5 HEM A 417 ND 103.5 88.0 164.1 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAM A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZWT RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT SATURATED CAMPHOR SOAKING REMARK 900 RELATED ID: 2ZAX RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT SATURATED CAMPHOR SOAKING REMARK 900 RELATED ID: 2CPP RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SPACEGROUP DBREF 2ZWU A 0 414 UNP P00183 CPXA_PSEPU 1 415 SEQRES 1 A 415 MET THR THR GLU THR ILE GLN SER ASN ALA ASN LEU ALA SEQRES 2 A 415 PRO LEU PRO PRO HIS VAL PRO GLU HIS LEU VAL PHE ASP SEQRES 3 A 415 PHE ASP MET TYR ASN PRO SER ASN LEU SER ALA GLY VAL SEQRES 4 A 415 GLN GLU ALA TRP ALA VAL LEU GLN GLU SER ASN VAL PRO SEQRES 5 A 415 ASP LEU VAL TRP THR ARG CYS ASN GLY GLY HIS TRP ILE SEQRES 6 A 415 ALA THR ARG GLY GLN LEU ILE ARG GLU ALA TYR GLU ASP SEQRES 7 A 415 TYR ARG HIS PHE SER SER GLU CYS PRO PHE ILE PRO ARG SEQRES 8 A 415 GLU ALA GLY GLU ALA TYR ASP PHE ILE PRO THR SER MET SEQRES 9 A 415 ASP PRO PRO GLU GLN ARG GLN PHE ARG ALA LEU ALA ASN SEQRES 10 A 415 GLN VAL VAL GLY MET PRO VAL VAL ASP LYS LEU GLU ASN SEQRES 11 A 415 ARG ILE GLN GLU LEU ALA CYS SER LEU ILE GLU SER LEU SEQRES 12 A 415 ARG PRO GLN GLY GLN CYS ASN PHE THR GLU ASP TYR ALA SEQRES 13 A 415 GLU PRO PHE PRO ILE ARG ILE PHE MET LEU LEU ALA GLY SEQRES 14 A 415 LEU PRO GLU GLU ASP ILE PRO HIS LEU LYS TYR LEU THR SEQRES 15 A 415 ASP GLN MET THR ARG PRO ASP GLY SER MET THR PHE ALA SEQRES 16 A 415 GLU ALA LYS GLU ALA LEU TYR ASP TYR LEU ILE PRO ILE SEQRES 17 A 415 ILE GLU GLN ARG ARG GLN LYS PRO GLY THR ASP ALA ILE SEQRES 18 A 415 SER ILE VAL ALA ASN GLY GLN VAL ASN GLY ARG PRO ILE SEQRES 19 A 415 THR SER ASP GLU ALA LYS ARG MET CYS GLY LEU LEU LEU SEQRES 20 A 415 VAL GLY GLY LEU ASP THR VAL VAL ASN PHE LEU SER PHE SEQRES 21 A 415 SER MET GLU PHE LEU ALA LYS SER PRO GLU HIS ARG GLN SEQRES 22 A 415 GLU LEU ILE GLU ARG PRO GLU ARG ILE PRO ALA ALA CYS SEQRES 23 A 415 GLU GLU LEU LEU ARG ARG PHE SER LEU VAL ALA ASP GLY SEQRES 24 A 415 ARG ILE LEU THR SER ASP TYR GLU PHE HIS GLY VAL GLN SEQRES 25 A 415 LEU LYS LYS GLY ASP GLN ILE LEU LEU PRO GLN MET LEU SEQRES 26 A 415 SER GLY LEU ASP GLU ARG GLU ASN ALA CYS PRO MET HIS SEQRES 27 A 415 VAL ASP PHE SER ARG GLN LYS VAL SER HIS THR THR PHE SEQRES 28 A 415 GLY HIS GLY SER HIS LEU CYS LEU GLY GLN HIS LEU ALA SEQRES 29 A 415 ARG ARG GLU ILE ILE VAL THR LEU LYS GLU TRP LEU THR SEQRES 30 A 415 ARG ILE PRO ASP PHE SER ILE ALA PRO GLY ALA GLN ILE SEQRES 31 A 415 GLN HIS LYS SER GLY ILE VAL SER GLY VAL GLN ALA LEU SEQRES 32 A 415 PRO LEU VAL TRP ASP PRO ALA THR THR LYS ALA VAL HET HEM A 417 46 HET CAM A 422 11 HET TRS A 423 8 HET K A 424 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CAM CAMPHOR HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM K POTASSIUM ION HETSYN HEM HEME HETSYN TRS TRIS BUFFER FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CAM C10 H16 O FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 K K 1+ FORMUL 6 HOH *796(H2 O) HELIX 1 1 PRO A 19 VAL A 23 5 5 HELIX 2 2 ASN A 33 ALA A 36 5 4 HELIX 3 3 GLY A 37 VAL A 44 1 8 HELIX 4 4 LEU A 45 GLU A 47 5 3 HELIX 5 5 ARG A 57 GLY A 61 5 5 HELIX 6 6 ARG A 67 ASP A 77 1 11 HELIX 7 7 PRO A 89 TYR A 96 1 8 HELIX 8 8 GLN A 108 GLY A 120 1 13 HELIX 9 9 GLY A 120 ARG A 143 1 24 HELIX 10 10 PHE A 150 TYR A 154 1 5 HELIX 11 11 GLU A 156 GLY A 168 1 13 HELIX 12 12 PRO A 170 GLU A 172 5 3 HELIX 13 13 ASP A 173 ARG A 186 1 14 HELIX 14 14 THR A 192 LYS A 214 1 23 HELIX 15 15 ASP A 218 ASN A 225 1 8 HELIX 16 16 THR A 234 THR A 252 1 19 HELIX 17 17 THR A 252 SER A 267 1 16 HELIX 18 18 SER A 267 ARG A 277 1 11 HELIX 19 19 ARG A 280 PHE A 292 1 13 HELIX 20 20 MET A 323 ASP A 328 1 6 HELIX 21 21 HIS A 352 LEU A 356 5 5 HELIX 22 22 GLY A 359 ILE A 378 1 20 HELIX 23 23 ASP A 407 THR A 411 5 5 SHEET 1 A 5 LEU A 53 THR A 56 0 SHEET 2 A 5 HIS A 62 ALA A 65 -1 O HIS A 62 N THR A 56 SHEET 3 A 5 GLN A 317 LEU A 319 1 O LEU A 319 N TRP A 63 SHEET 4 A 5 GLY A 298 LEU A 301 -1 N ARG A 299 O ILE A 318 SHEET 5 A 5 PHE A 81 SER A 82 -1 N SER A 82 O ILE A 300 SHEET 1 B 3 GLN A 147 ASN A 149 0 SHEET 2 B 3 PRO A 403 VAL A 405 -1 O LEU A 404 N CYS A 148 SHEET 3 B 3 SER A 382 ILE A 383 -1 N SER A 382 O VAL A 405 SHEET 1 C 2 GLN A 227 VAL A 228 0 SHEET 2 C 2 ARG A 231 PRO A 232 -1 O ARG A 231 N VAL A 228 SHEET 1 D 2 TYR A 305 PHE A 307 0 SHEET 2 D 2 VAL A 310 LEU A 312 -1 O VAL A 310 N PHE A 307 SHEET 1 E 2 HIS A 391 LYS A 392 0 SHEET 2 E 2 GLY A 398 VAL A 399 -1 O GLY A 398 N LYS A 392 LINK O GLU A 84 K K A 424 1555 1555 2.59 LINK O GLY A 93 K K A 424 1555 1555 2.76 LINK O GLU A 94 K K A 424 1555 1555 2.80 LINK O TYR A 96 K K A 424 1555 1555 2.61 LINK SG CYS A 357 FE HEM A 417 1555 1555 2.37 LINK K K A 424 O HOH A1382 1555 1555 2.86 LINK K K A 424 O HOH A1389 1555 1555 2.77 CISPEP 1 ILE A 88 PRO A 89 0 -3.67 CISPEP 2 ILE A 88 PRO A 89 0 6.54 CISPEP 3 ILE A 99 PRO A 100 0 7.04 CISPEP 4 PRO A 105 PRO A 106 0 2.34 SITE 1 AC1 21 PRO A 100 THR A 101 GLN A 108 ARG A 112 SITE 2 AC1 21 LEU A 245 GLY A 248 GLY A 249 THR A 252 SITE 3 AC1 21 ASP A 297 ARG A 299 GLN A 322 THR A 349 SITE 4 AC1 21 PHE A 350 GLY A 351 HIS A 355 CYS A 357 SITE 5 AC1 21 GLY A 359 CAM A 422 HOH A1014 HOH A1236 SITE 6 AC1 21 HOH A1604 SITE 1 AC2 7 PHE A 87 TYR A 96 THR A 101 LEU A 244 SITE 2 AC2 7 VAL A 295 HEM A 417 HOH A1604 SITE 1 AC3 6 HIS A 21 VAL A 23 PHE A 24 ASN A 49 SITE 2 AC3 6 PRO A 51 HOH A1743 SITE 1 AC4 6 GLU A 84 GLY A 93 GLU A 94 TYR A 96 SITE 2 AC4 6 HOH A1382 HOH A1389 CRYST1 63.608 63.608 250.389 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015721 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003994 0.00000