HEADER TRANSFERASE 26-JAN-09 2ZYJ TITLE CRYSTAL STRUCTURE OF LYSN, ALPHA-AMINOADIPATE AMINOTRANSFERASE TITLE 2 (COMPLEXED WITH N-(5'-PHOSPHOPYRIDOXYL)-L-GLUTAMATE), FROM THERMUS TITLE 3 THERMOPHILUS HB27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMINODIPATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.39; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: LYSN, TT_C0043; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 RIL-CODON PLUS (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-LYSN, PET-26B(+) KEYWDS ALPHA-AMINOADIPATE AMINOTRANSFERASE, THERMUS THERMOPHILUS, KEYWDS 2 AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OUCHI,T.TOMITA,T.KUZUYAMA,M.NISHIYAMA REVDAT 3 01-NOV-23 2ZYJ 1 REMARK REVDAT 2 13-JUL-11 2ZYJ 1 VERSN REVDAT 1 01-SEP-09 2ZYJ 0 JRNL AUTH T.OUCHI,T.TOMITA,T.MIYAGAWA,T.KUZUYAMA,M.NISHIYAMA JRNL TITL DUAL ROLES OF A CONSERVED PAIR, ARG23 AND SER20, IN JRNL TITL 2 RECOGNITION OF MULTIPLE SUBSTRATES IN ALPHA-AMINOADIPATE JRNL TITL 3 AMINOTRANSFERASE FROM THERMUS THERMOPHILUS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 388 21 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19632206 JRNL DOI 10.1016/J.BBRC.2009.07.096 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 86525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4563 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 320 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 956 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.165 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6543 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8874 ; 1.515 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 834 ; 5.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;34.488 ;22.297 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1146 ;15.844 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 77 ;19.936 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 956 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5043 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3703 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4500 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 799 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 126 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4142 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6457 ; 1.245 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2686 ; 2.091 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2397 ; 3.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000028586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3CBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.1M HEPES, 0.2M CALCIUM REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.88050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.41350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.67300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.41350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.67300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 105 O HOH B 854 1.60 REMARK 500 NH2 ARG B 206 O HOH B 869 1.77 REMARK 500 O HOH A 644 O HOH A 958 2.13 REMARK 500 O HOH A 787 O HOH A 790 2.14 REMARK 500 O HOH B 533 O HOH B 940 2.15 REMARK 500 O GLY B 177 O HOH B 881 2.18 REMARK 500 O HOH A 715 O HOH A 882 2.18 REMARK 500 OE2 GLU B 194 O HOH B 619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 563 O HOH B 639 2354 2.16 REMARK 500 O HOH B 778 O HOH B 896 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 LEU B 390 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -101.34 -89.59 REMARK 500 PHE A 172 62.39 66.37 REMARK 500 LEU A 208 35.76 -90.83 REMARK 500 LEU A 240 -69.26 -144.27 REMARK 500 ASP A 267 13.34 -159.56 REMARK 500 LEU A 268 -69.51 67.32 REMARK 500 LYS A 333 53.95 25.60 REMARK 500 ALA B 38 -103.37 -94.46 REMARK 500 PHE B 172 63.36 64.85 REMARK 500 LEU B 208 36.85 -94.70 REMARK 500 LEU B 240 -67.06 -141.21 REMARK 500 ASP B 267 14.19 -156.02 REMARK 500 LEU B 268 -71.21 68.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CBF RELATED DB: PDB REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-2-AMINOADIPATE COMPLEXED FORM OF THE SAME REMARK 900 PROTEIN. REMARK 900 RELATED ID: 2Z1Y RELATED DB: PDB REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-LEUCINE COMPLEXED FORM OF THE SAME REMARK 900 PROTEIN. REMARK 900 RELATED ID: 2EGY RELATED DB: PDB REMARK 900 PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME PROTEIN. REMARK 900 RELATED ID: 2ZP7 RELATED DB: PDB REMARK 900 LEUCINE AND PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME REMARK 900 PROTEIN. DBREF 2ZYJ A 1 397 UNP Q72LL6 Q72LL6_THET2 1 397 DBREF 2ZYJ B 1 397 UNP Q72LL6 Q72LL6_THET2 1 397 SEQRES 1 A 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY SEQRES 2 A 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU SEQRES 3 A 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY SEQRES 4 A 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA SEQRES 5 A 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU SEQRES 6 A 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO SEQRES 7 A 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO SEQRES 8 A 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU SEQRES 9 A 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO SEQRES 10 A 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN SEQRES 11 A 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO SEQRES 12 A 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU SEQRES 13 A 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE SEQRES 14 A 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU SEQRES 15 A 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG SEQRES 16 A 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU SEQRES 17 A 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU SEQRES 18 A 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY SEQRES 19 A 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA SEQRES 20 A 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL SEQRES 21 A 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU SEQRES 22 A 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE SEQRES 23 A 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU SEQRES 24 A 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL SEQRES 25 A 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET SEQRES 26 A 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU SEQRES 27 A 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE SEQRES 28 A 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU SEQRES 29 A 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU SEQRES 30 A 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU SEQRES 31 A 397 LYS GLY LEU LEU ALA LEU VAL SEQRES 1 B 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY SEQRES 2 B 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU SEQRES 3 B 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY SEQRES 4 B 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA SEQRES 5 B 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU SEQRES 6 B 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO SEQRES 7 B 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO SEQRES 8 B 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU SEQRES 9 B 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO SEQRES 10 B 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN SEQRES 11 B 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO SEQRES 12 B 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU SEQRES 13 B 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE SEQRES 14 B 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU SEQRES 15 B 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG SEQRES 16 B 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU SEQRES 17 B 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU SEQRES 18 B 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY SEQRES 19 B 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA SEQRES 20 B 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL SEQRES 21 B 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU SEQRES 22 B 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE SEQRES 23 B 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU SEQRES 24 B 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL SEQRES 25 B 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET SEQRES 26 B 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU SEQRES 27 B 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE SEQRES 28 B 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU SEQRES 29 B 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU SEQRES 30 B 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU SEQRES 31 B 397 LYS GLY LEU LEU ALA LEU VAL HET PGU A 500 25 HET PGU B 500 25 HETNAM PGU N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- HETNAM 2 PGU 4-YL}METHYL)-L-GLUTAMIC ACID FORMUL 3 PGU 2(C13 H19 N2 O9 P) FORMUL 5 HOH *956(H2 O) HELIX 1 1 SER A 5 PHE A 10 1 6 HELIX 2 2 GLY A 11 ILE A 17 5 7 HELIX 3 3 SER A 20 GLN A 30 1 11 HELIX 4 4 ALA A 43 PHE A 47 5 5 HELIX 5 5 PRO A 48 LEU A 68 1 21 HELIX 6 6 TYR A 76 GLY A 88 1 13 HELIX 7 7 ARG A 90 GLU A 92 5 3 HELIX 8 8 THR A 98 LEU A 112 1 15 HELIX 9 9 TYR A 125 LEU A 134 1 10 HELIX 10 10 ASP A 150 GLU A 161 1 12 HELIX 11 11 PRO A 181 GLY A 196 1 16 HELIX 12 12 SER A 217 GLY A 226 1 10 HELIX 13 13 SER A 241 ARG A 245 5 5 HELIX 14 14 HIS A 252 LEU A 268 1 17 HELIX 15 15 PRO A 271 LYS A 283 1 13 HELIX 16 16 GLY A 285 VAL A 312 1 28 HELIX 17 17 SER A 336 GLU A 347 1 12 HELIX 18 18 GLY A 355 PHE A 358 5 4 HELIX 19 19 ASP A 375 VAL A 397 1 23 HELIX 20 20 SER B 5 PHE B 10 1 6 HELIX 21 21 GLY B 11 ARG B 16 1 6 HELIX 22 22 SER B 20 GLN B 30 1 11 HELIX 23 23 ALA B 43 PHE B 47 5 5 HELIX 24 24 PRO B 48 GLN B 69 1 22 HELIX 25 25 TYR B 76 GLY B 88 1 13 HELIX 26 26 ARG B 90 GLU B 92 5 3 HELIX 27 27 GLY B 99 LEU B 112 1 14 HELIX 28 28 TYR B 125 LEU B 134 1 10 HELIX 29 29 ASP B 150 LYS B 159 1 10 HELIX 30 30 PRO B 181 GLY B 196 1 16 HELIX 31 31 SER B 217 GLY B 226 1 10 HELIX 32 32 HIS B 252 LEU B 268 1 17 HELIX 33 33 PRO B 271 LYS B 283 1 13 HELIX 34 34 GLY B 285 VAL B 312 1 28 HELIX 35 35 SER B 336 GLU B 347 1 12 HELIX 36 36 GLY B 355 PHE B 358 5 4 HELIX 37 37 ASP B 375 VAL B 397 1 23 SHEET 1 A 5 LEU A 35 PHE A 37 0 SHEET 2 A 5 VAL A 349 PRO A 353 1 O ALA A 350 N PHE A 37 SHEET 3 A 5 THR A 366 SER A 370 -1 O ARG A 368 N VAL A 352 SHEET 4 A 5 PHE A 326 GLU A 330 -1 N VAL A 327 O LEU A 369 SHEET 5 A 5 ARG A 317 TYR A 318 -1 N ARG A 317 O GLU A 330 SHEET 1 B 5 VAL A 94 THR A 97 0 SHEET 2 B 5 ALA A 247 VAL A 250 -1 O ALA A 249 N LEU A 95 SHEET 3 B 5 VAL A 230 SER A 235 -1 N GLY A 234 O PHE A 248 SHEET 4 B 5 VAL A 199 ASP A 202 1 N VAL A 199 O ILE A 231 SHEET 5 B 5 LEU A 166 LEU A 168 1 N LEU A 166 O VAL A 200 SHEET 1 C 3 PRO A 117 ALA A 122 0 SHEET 2 C 3 ARG A 138 GLY A 145 1 O LEU A 140 N VAL A 118 SHEET 3 C 3 GLY A 148 PRO A 149 -1 O GLY A 148 N GLY A 145 SHEET 1 D 5 LEU B 35 PHE B 37 0 SHEET 2 D 5 VAL B 349 PRO B 353 1 O ALA B 350 N PHE B 37 SHEET 3 D 5 THR B 366 SER B 370 -1 O ARG B 368 N VAL B 352 SHEET 4 D 5 PHE B 326 GLU B 330 -1 N VAL B 327 O LEU B 369 SHEET 5 D 5 ARG B 317 TYR B 318 -1 N ARG B 317 O GLU B 330 SHEET 1 E 8 VAL B 94 THR B 97 0 SHEET 2 E 8 ALA B 247 VAL B 250 -1 O ALA B 249 N LEU B 95 SHEET 3 E 8 VAL B 230 SER B 235 -1 N GLY B 234 O PHE B 248 SHEET 4 E 8 VAL B 199 ASP B 202 1 N VAL B 199 O ILE B 231 SHEET 5 E 8 LEU B 166 LEU B 168 1 N LEU B 168 O ASP B 202 SHEET 6 E 8 PRO B 117 ALA B 122 1 N LEU B 119 O TYR B 167 SHEET 7 E 8 ARG B 138 GLY B 145 1 O LEU B 140 N VAL B 118 SHEET 8 E 8 GLY B 148 PRO B 149 -1 O GLY B 148 N GLY B 145 CISPEP 1 ALA A 122 PRO A 123 0 1.72 CISPEP 2 ASN A 174 PRO A 175 0 9.48 CISPEP 3 ALA B 122 PRO B 123 0 -5.74 CISPEP 4 ASN B 174 PRO B 175 0 11.33 SITE 1 AC1 20 ILE A 22 ARG A 23 GLY A 39 GLY A 40 SITE 2 AC1 20 GLY A 99 SER A 100 GLN A 101 TYR A 125 SITE 3 AC1 20 ASN A 174 ASP A 202 TYR A 205 SER A 235 SITE 4 AC1 20 SER A 237 LYS A 238 ARG A 245 ARG A 368 SITE 5 AC1 20 HOH A 544 HOH A 622 TYR B 70 LEU B 268 SITE 1 AC2 19 TYR A 70 ILE B 22 ARG B 23 GLY B 39 SITE 2 AC2 19 GLY B 40 GLY B 99 SER B 100 GLN B 101 SITE 3 AC2 19 TYR B 125 ASN B 174 ASP B 202 TYR B 205 SITE 4 AC2 19 SER B 235 SER B 237 LYS B 238 ARG B 245 SITE 5 AC2 19 ARG B 368 HOH B 512 HOH B 617 CRYST1 55.761 93.346 150.827 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006630 0.00000