HEADER UNKNOWN FUNCTION 06-FEB-09 2ZZ8 TITLE CRYSTAL STRUCTURE OF LIPL32, THE MOST ABUNDANT SURFACE PROTEIN OF TITLE 2 PATHOGENIC LEPTOSPIRA SPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPL32 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES IN DATABASE 21-261; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 3 ORGANISM_TAXID: 173; SOURCE 4 STRAIN: LAI; SOURCE 5 GENE: LIPL32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS LEPTOSPIRA, OUTER-MEMBRANE PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.P.VIVIAN,T.BEDDOE,J.ROSSJOHN REVDAT 5 13-MAR-24 2ZZ8 1 REMARK REVDAT 4 13-JUL-11 2ZZ8 1 VERSN REVDAT 3 29-DEC-09 2ZZ8 1 REMARK REVDAT 2 29-SEP-09 2ZZ8 1 JRNL REVDAT 1 24-FEB-09 2ZZ8 0 JRNL AUTH J.P.VIVIAN,T.BEDDOE,A.D.MCALISTER,M.C.WILCE,L.ZAKER-TABRIZI, JRNL AUTH 2 S.TROY,E.BYRES,D.E.HOKE,P.A.CULLEN,M.LO,G.L.MURRAY,B.ADLER, JRNL AUTH 3 J.ROSSJOHN JRNL TITL CRYSTAL STRUCTURE OF LIPL32, THE MOST ABUNDANT SURFACE JRNL TITL 2 PROTEIN OF PATHOGENIC LEPTOSPIRA SPP. JRNL REF J.MOL.BIOL. V. 387 1229 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19236879 JRNL DOI 10.1016/J.JMB.2009.02.038 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 55681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3640 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4952 ; 1.392 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;37.064 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;15.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2760 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2300 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3732 ; 1.247 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 1.950 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 3.132 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6550 73.3250 7.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.0665 REMARK 3 T33: 0.0660 T12: -0.0687 REMARK 3 T13: 0.0142 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.7458 L22: 3.1734 REMARK 3 L33: 3.2009 L12: -0.5658 REMARK 3 L13: 0.0788 L23: -0.1898 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0294 S13: 0.1091 REMARK 3 S21: -0.0722 S22: -0.0330 S23: 0.1670 REMARK 3 S31: -0.1257 S32: -0.0586 S33: 0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2110 47.3840 9.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.1621 REMARK 3 T33: 0.1263 T12: -0.1213 REMARK 3 T13: 0.0524 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 4.0128 L22: 2.3589 REMARK 3 L33: 2.7728 L12: 1.7640 REMARK 3 L13: 1.6405 L23: 0.9055 REMARK 3 S TENSOR REMARK 3 S11: 0.2026 S12: -0.1693 S13: -0.1382 REMARK 3 S21: 0.0510 S22: -0.1857 S23: 0.0804 REMARK 3 S31: 0.0609 S32: -0.0884 S33: -0.0170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000028611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; AUSTRALIAN REMARK 200 SYNCHROTRON REMARK 200 BEAMLINE : NULL; MX1 REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 0.954 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++; ADSC QUANTUM REMARK 200 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM MALONATE, 0.1M SODIUM REMARK 280 CACODYLATE, 4%(V/V) BUTYROLACTONE, PH 6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.99400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.99700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.99700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.99400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 140 REMARK 465 LEU A 141 REMARK 465 ASP A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 ASP A 145 REMARK 465 ASP A 146 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PHE B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 140 REMARK 465 LEU B 141 REMARK 465 ASP B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 ASP B 145 REMARK 465 ASP B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 136 CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 LYS B 136 CD CE NZ REMARK 470 LYS B 172 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 306 O HOH A 581 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 254 O HOH A 497 3565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 208 CB - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 VAL B 208 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -157.10 -89.02 REMARK 500 ASN A 57 12.90 -155.76 REMARK 500 GLU A 73 146.20 -173.18 REMARK 500 HIS A 110 -32.41 -134.99 REMARK 500 SER A 122 50.02 -92.49 REMARK 500 ASN B 57 7.36 -150.12 REMARK 500 HIS B 110 -32.79 -133.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ZZ8 A 2 242 UNP O34094 O34094_LEPIN 21 261 DBREF 2ZZ8 B 2 242 UNP O34094 O34094_LEPIN 21 261 SEQRES 1 A 241 GLY ALA PHE GLY GLY LEU PRO SER LEU LYS SER SER PHE SEQRES 2 A 241 VAL LEU SER GLU ASP THR ILE PRO GLY THR ASN GLU THR SEQRES 3 A 241 VAL LYS THR LEU LEU PRO TYR GLY SER VAL ILE ASN TYR SEQRES 4 A 241 TYR GLY TYR VAL LYS PRO GLY GLN ALA PRO ASP GLY LEU SEQRES 5 A 241 VAL ASP GLY ASN LYS LYS ALA TYR TYR LEU TYR VAL TRP SEQRES 6 A 241 ILE PRO ALA VAL ILE ALA GLU MET GLY VAL ARG MET ILE SEQRES 7 A 241 SER PRO THR GLY GLU ILE GLY GLU PRO GLY ASP GLY ASP SEQRES 8 A 241 LEU VAL SER ASP ALA PHE LYS ALA ALA THR PRO GLU GLU SEQRES 9 A 241 LYS SER MET PRO HIS TRP PHE ASP THR TRP ILE ARG VAL SEQRES 10 A 241 GLU ARG MET SER ALA ILE MET PRO ASP GLN ILE ALA LYS SEQRES 11 A 241 ALA ALA LYS ALA LYS PRO VAL GLN LYS LEU ASP ASP ASP SEQRES 12 A 241 ASP ASP GLY ASP ASP THR TYR LYS GLU GLU ARG HIS ASN SEQRES 13 A 241 LYS TYR ASN SER LEU THR ARG ILE LYS ILE PRO ASN PRO SEQRES 14 A 241 PRO LYS SER PHE ASP ASP LEU LYS ASN ILE ASP THR LYS SEQRES 15 A 241 LYS LEU LEU VAL ARG GLY LEU TYR ARG ILE SER PHE THR SEQRES 16 A 241 THR TYR LYS PRO GLY GLU VAL LYS GLY SER PHE VAL ALA SEQRES 17 A 241 SER VAL GLY LEU LEU PHE PRO PRO GLY ILE PRO GLY VAL SEQRES 18 A 241 SER PRO LEU ILE HIS SER ASN PRO GLU GLU LEU GLN LYS SEQRES 19 A 241 GLN ALA ILE ALA ALA GLU GLU SEQRES 1 B 241 GLY ALA PHE GLY GLY LEU PRO SER LEU LYS SER SER PHE SEQRES 2 B 241 VAL LEU SER GLU ASP THR ILE PRO GLY THR ASN GLU THR SEQRES 3 B 241 VAL LYS THR LEU LEU PRO TYR GLY SER VAL ILE ASN TYR SEQRES 4 B 241 TYR GLY TYR VAL LYS PRO GLY GLN ALA PRO ASP GLY LEU SEQRES 5 B 241 VAL ASP GLY ASN LYS LYS ALA TYR TYR LEU TYR VAL TRP SEQRES 6 B 241 ILE PRO ALA VAL ILE ALA GLU MET GLY VAL ARG MET ILE SEQRES 7 B 241 SER PRO THR GLY GLU ILE GLY GLU PRO GLY ASP GLY ASP SEQRES 8 B 241 LEU VAL SER ASP ALA PHE LYS ALA ALA THR PRO GLU GLU SEQRES 9 B 241 LYS SER MET PRO HIS TRP PHE ASP THR TRP ILE ARG VAL SEQRES 10 B 241 GLU ARG MET SER ALA ILE MET PRO ASP GLN ILE ALA LYS SEQRES 11 B 241 ALA ALA LYS ALA LYS PRO VAL GLN LYS LEU ASP ASP ASP SEQRES 12 B 241 ASP ASP GLY ASP ASP THR TYR LYS GLU GLU ARG HIS ASN SEQRES 13 B 241 LYS TYR ASN SER LEU THR ARG ILE LYS ILE PRO ASN PRO SEQRES 14 B 241 PRO LYS SER PHE ASP ASP LEU LYS ASN ILE ASP THR LYS SEQRES 15 B 241 LYS LEU LEU VAL ARG GLY LEU TYR ARG ILE SER PHE THR SEQRES 16 B 241 THR TYR LYS PRO GLY GLU VAL LYS GLY SER PHE VAL ALA SEQRES 17 B 241 SER VAL GLY LEU LEU PHE PRO PRO GLY ILE PRO GLY VAL SEQRES 18 B 241 SER PRO LEU ILE HIS SER ASN PRO GLU GLU LEU GLN LYS SEQRES 19 B 241 GLN ALA ILE ALA ALA GLU GLU FORMUL 3 HOH *435(H2 O) HELIX 1 1 SER A 95 ALA A 101 1 7 HELIX 2 2 THR A 102 MET A 108 1 7 HELIX 3 3 MET A 125 ASP A 127 5 3 HELIX 4 4 GLN A 128 ALA A 135 1 8 HELIX 5 5 SER A 173 LYS A 178 5 6 HELIX 6 6 ASP A 181 LEU A 185 5 5 HELIX 7 7 ASN A 229 GLU A 241 1 13 HELIX 8 8 SER B 95 ALA B 101 1 7 HELIX 9 9 THR B 102 MET B 108 1 7 HELIX 10 10 MET B 125 ASP B 127 5 3 HELIX 11 11 GLN B 128 ALA B 135 1 8 HELIX 12 12 SER B 173 LYS B 178 5 6 HELIX 13 13 ASP B 181 LEU B 185 5 5 HELIX 14 14 ASN B 229 GLU B 242 1 14 SHEET 1 A 2 LYS A 11 THR A 20 0 SHEET 2 A 2 THR A 27 PRO A 33 -1 O THR A 30 N SER A 17 SHEET 1 B 5 ASP A 92 VAL A 94 0 SHEET 2 B 5 SER A 36 VAL A 44 1 N TYR A 41 O LEU A 93 SHEET 3 B 5 GLY A 205 LEU A 214 -1 O ALA A 209 N TYR A 40 SHEET 4 B 5 GLU A 73 ILE A 79 -1 N GLU A 73 O LEU A 214 SHEET 5 B 5 LEU A 162 LYS A 166 -1 O ILE A 165 N MET A 74 SHEET 1 C 5 GLY A 52 VAL A 54 0 SHEET 2 C 5 LYS A 58 ILE A 67 -1 O ALA A 60 N GLY A 52 SHEET 3 C 5 GLY A 189 THR A 196 -1 O ILE A 193 N LEU A 63 SHEET 4 C 5 TRP A 115 ARG A 120 -1 N GLU A 119 O ARG A 192 SHEET 5 C 5 TYR A 151 GLU A 154 -1 O LYS A 152 N VAL A 118 SHEET 1 D 3 GLY A 52 VAL A 54 0 SHEET 2 D 3 LYS A 58 ILE A 67 -1 O ALA A 60 N GLY A 52 SHEET 3 D 3 LEU A 225 HIS A 227 -1 O LEU A 225 N TRP A 66 SHEET 1 E 2 LYS B 11 THR B 20 0 SHEET 2 E 2 THR B 27 PRO B 33 -1 O THR B 30 N LEU B 16 SHEET 1 F 5 ASP B 92 VAL B 94 0 SHEET 2 F 5 SER B 36 VAL B 44 1 N TYR B 41 O LEU B 93 SHEET 3 F 5 GLY B 205 LEU B 214 -1 O ALA B 209 N TYR B 40 SHEET 4 F 5 GLU B 73 ILE B 79 -1 N GLU B 73 O LEU B 214 SHEET 5 F 5 LEU B 162 LYS B 166 -1 O ILE B 165 N MET B 74 SHEET 1 G 5 GLY B 52 VAL B 54 0 SHEET 2 G 5 LYS B 58 ILE B 67 -1 O ALA B 60 N GLY B 52 SHEET 3 G 5 GLY B 189 THR B 196 -1 O ILE B 193 N LEU B 63 SHEET 4 G 5 TRP B 115 ARG B 120 -1 N GLU B 119 O ARG B 192 SHEET 5 G 5 TYR B 151 GLU B 154 -1 O LYS B 152 N VAL B 118 SHEET 1 H 3 GLY B 52 VAL B 54 0 SHEET 2 H 3 LYS B 58 ILE B 67 -1 O ALA B 60 N GLY B 52 SHEET 3 H 3 LEU B 225 HIS B 227 -1 O HIS B 227 N TYR B 64 CISPEP 1 SER A 80 PRO A 81 0 -10.22 CISPEP 2 LYS A 199 PRO A 200 0 4.19 CISPEP 3 SER B 80 PRO B 81 0 -10.22 CISPEP 4 LYS B 199 PRO B 200 0 6.31 CRYST1 125.895 125.895 95.991 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007943 0.004586 0.000000 0.00000 SCALE2 0.000000 0.009172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010418 0.00000