HEADER TRANSFERASE/RNA 19-FEB-09 2ZZN TITLE THE COMPLEX STRUCTURE OF ATRM5 AND TRNACYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ0883; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (71-MER); COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHESIZED IN VITRO WITH THE RECOMBINANT RNA SOURCE 13 POLYMERASE OF T7 PHAGE KEYWDS PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GOTO-ITO,T.ITO,S.YOKOYAMA REVDAT 3 01-NOV-23 2ZZN 1 REMARK REVDAT 2 03-NOV-09 2ZZN 1 JRNL REVDAT 1 15-SEP-09 2ZZN 0 JRNL AUTH S.GOTO-ITO,T.ITO,M.KURATANI,Y.BESSHO,S.YOKOYAMA JRNL TITL TERTIARY STRUCTURE CHECKPOINT AT ANTICODON LOOP MODIFICATION JRNL TITL 2 IN TRNA FUNCTIONAL MATURATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1109 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19749755 JRNL DOI 10.1038/NSMB.1653 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 14748571.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3941 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 228 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5486 REMARK 3 NUCLEIC ACID ATOMS : 3034 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : -0.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -16.87000 REMARK 3 B33 (A**2) : 15.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.890 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 37.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ADOMET.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ADOMET.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ZZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000028626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 87.5MM MG(HCOO)2, 4.38% PEG 3350, REMARK 280 43.8MM CH3COONA PH 4.6, 8.8% MPD, 0.4MM CYMAL-5, 12.5MM NA-HEPES REMARK 280 PH 7.5, SITTING DROP, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.91900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.22950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.26850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.22950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.91900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.26850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 U C 73 REMARK 465 C C 74 REMARK 465 C C 75 REMARK 465 A C 76 REMARK 465 U D 73 REMARK 465 C D 74 REMARK 465 C D 75 REMARK 465 A D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G C 1 P G C 1 OP3 -0.077 REMARK 500 G D 1 P G D 1 OP3 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 129 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 G D 7 N9 - C1' - C2' ANGL. DEV. = 8.4 DEGREES REMARK 500 G D 19 N9 - C1' - C2' ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 90.68 -52.04 REMARK 500 ILE A 7 -167.10 -112.98 REMARK 500 LYS A 9 -58.86 -25.79 REMARK 500 LYS A 10 -71.04 -21.47 REMARK 500 HIS A 11 35.82 -89.99 REMARK 500 LYS A 43 -85.59 -72.29 REMARK 500 ASP A 44 138.80 174.77 REMARK 500 VAL A 45 124.57 164.61 REMARK 500 ASP A 46 136.30 -32.30 REMARK 500 GLU A 47 15.15 -65.92 REMARK 500 PHE A 58 -147.37 -174.78 REMARK 500 GLU A 64 -171.86 -67.06 REMARK 500 GLU A 67 143.47 44.88 REMARK 500 ILE A 71 -83.74 -65.25 REMARK 500 PRO A 129 99.40 -56.14 REMARK 500 GLU A 143 -103.83 73.45 REMARK 500 ASN A 165 61.40 36.35 REMARK 500 LYS A 217 -81.03 -59.19 REMARK 500 LEU A 241 28.91 -147.01 REMARK 500 HIS A 243 33.98 -89.90 REMARK 500 LYS A 244 -47.82 -140.38 REMARK 500 SER A 250 171.84 177.94 REMARK 500 MET A 264 69.21 -116.08 REMARK 500 PRO A 267 -36.96 -38.71 REMARK 500 LYS A 305 14.56 -65.77 REMARK 500 PRO A 322 108.42 -53.61 REMARK 500 LYS A 335 109.19 73.11 REMARK 500 LYS B 9 -39.76 -32.71 REMARK 500 LYS B 27 -21.47 -34.34 REMARK 500 ASP B 28 -105.06 -72.30 REMARK 500 TYR B 29 143.04 -28.41 REMARK 500 ILE B 31 155.43 -48.98 REMARK 500 VAL B 45 139.48 166.74 REMARK 500 GLU B 47 -6.46 -58.40 REMARK 500 ASN B 55 36.07 -70.26 REMARK 500 GLU B 64 165.31 -44.98 REMARK 500 GLU B 66 82.48 -150.51 REMARK 500 GLU B 67 164.09 -28.41 REMARK 500 LYS B 72 156.96 -9.52 REMARK 500 LYS B 82 15.71 -69.33 REMARK 500 TYR B 84 38.43 -141.21 REMARK 500 LYS B 86 -73.50 -50.57 REMARK 500 ASP B 89 -47.47 -28.25 REMARK 500 PRO B 129 101.62 -54.69 REMARK 500 ASN B 156 59.42 -98.64 REMARK 500 ASN B 165 29.49 45.88 REMARK 500 ILE B 173 -11.66 -46.14 REMARK 500 ARG B 181 4.05 -69.15 REMARK 500 ILE B 189 25.04 -61.49 REMARK 500 LYS B 191 18.70 -142.43 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U C 11 0.10 SIDE CHAIN REMARK 500 G C 15 0.06 SIDE CHAIN REMARK 500 G D 19 0.06 SIDE CHAIN REMARK 500 G D 52 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 201 DBREF 2ZZN A 1 336 UNP Q58293 Y883_METJA 1 336 DBREF 2ZZN B 1 336 UNP Q58293 Y883_METJA 1 336 DBREF1 2ZZN C 1 76 GB L77117 DBREF2 2ZZN C 6626255 619234 619308 DBREF1 2ZZN D 1 76 GB L77117 DBREF2 2ZZN D 6626255 619234 619308 SEQRES 1 A 336 MET PRO LEU CYS LEU LYS ILE ASN LYS LYS HIS GLY GLU SEQRES 2 A 336 GLN THR ARG ARG ILE LEU ILE GLU ASN ASN LEU LEU ASN SEQRES 3 A 336 LYS ASP TYR LYS ILE THR SER GLU GLY ASN TYR LEU TYR SEQRES 4 A 336 LEU PRO ILE LYS ASP VAL ASP GLU ASP ILE LEU LYS SER SEQRES 5 A 336 ILE LEU ASN ILE GLU PHE GLU LEU VAL ASP LYS GLU LEU SEQRES 6 A 336 GLU GLU LYS LYS ILE ILE LYS LYS PRO SER PHE ARG GLU SEQRES 7 A 336 ILE ILE SER LYS LYS TYR ARG LYS GLU ILE ASP GLU GLY SEQRES 8 A 336 LEU ILE SER LEU SER TYR ASP VAL VAL GLY ASP LEU VAL SEQRES 9 A 336 ILE LEU GLN ILE SER ASP GLU VAL ASP GLU LYS ILE ARG SEQRES 10 A 336 LYS GLU ILE GLY GLU LEU ALA TYR LYS LEU ILE PRO CYS SEQRES 11 A 336 LYS GLY VAL PHE ARG ARG LYS SER GLU VAL LYS GLY GLU SEQRES 12 A 336 PHE ARG VAL ARG GLU LEU GLU HIS LEU ALA GLY GLU ASN SEQRES 13 A 336 ARG THR LEU THR ILE HIS LYS GLU ASN GLY TYR ARG LEU SEQRES 14 A 336 TRP VAL ASP ILE ALA LYS VAL TYR PHE SER PRO ARG LEU SEQRES 15 A 336 GLY GLY GLU ARG ALA ARG ILE MET LYS LYS VAL SER LEU SEQRES 16 A 336 ASN ASP VAL VAL VAL ASP MET PHE ALA GLY VAL GLY PRO SEQRES 17 A 336 PHE SER ILE ALA CYS LYS ASN ALA LYS LYS ILE TYR ALA SEQRES 18 A 336 ILE ASP ILE ASN PRO HIS ALA ILE GLU LEU LEU LYS LYS SEQRES 19 A 336 ASN ILE LYS LEU ASN LYS LEU GLU HIS LYS ILE ILE PRO SEQRES 20 A 336 ILE LEU SER ASP VAL ARG GLU VAL ASP VAL LYS GLY ASN SEQRES 21 A 336 ARG VAL ILE MET ASN LEU PRO LYS PHE ALA HIS LYS PHE SEQRES 22 A 336 ILE ASP LYS ALA LEU ASP ILE VAL GLU GLU GLY GLY VAL SEQRES 23 A 336 ILE HIS TYR TYR THR ILE GLY LYS ASP PHE ASP LYS ALA SEQRES 24 A 336 ILE LYS LEU PHE GLU LYS LYS CYS ASP CYS GLU VAL LEU SEQRES 25 A 336 GLU LYS ARG ILE VAL LYS SER TYR ALA PRO ARG GLU TYR SEQRES 26 A 336 ILE LEU ALA LEU ASP PHE LYS ILE ASN LYS LYS SEQRES 1 B 336 MET PRO LEU CYS LEU LYS ILE ASN LYS LYS HIS GLY GLU SEQRES 2 B 336 GLN THR ARG ARG ILE LEU ILE GLU ASN ASN LEU LEU ASN SEQRES 3 B 336 LYS ASP TYR LYS ILE THR SER GLU GLY ASN TYR LEU TYR SEQRES 4 B 336 LEU PRO ILE LYS ASP VAL ASP GLU ASP ILE LEU LYS SER SEQRES 5 B 336 ILE LEU ASN ILE GLU PHE GLU LEU VAL ASP LYS GLU LEU SEQRES 6 B 336 GLU GLU LYS LYS ILE ILE LYS LYS PRO SER PHE ARG GLU SEQRES 7 B 336 ILE ILE SER LYS LYS TYR ARG LYS GLU ILE ASP GLU GLY SEQRES 8 B 336 LEU ILE SER LEU SER TYR ASP VAL VAL GLY ASP LEU VAL SEQRES 9 B 336 ILE LEU GLN ILE SER ASP GLU VAL ASP GLU LYS ILE ARG SEQRES 10 B 336 LYS GLU ILE GLY GLU LEU ALA TYR LYS LEU ILE PRO CYS SEQRES 11 B 336 LYS GLY VAL PHE ARG ARG LYS SER GLU VAL LYS GLY GLU SEQRES 12 B 336 PHE ARG VAL ARG GLU LEU GLU HIS LEU ALA GLY GLU ASN SEQRES 13 B 336 ARG THR LEU THR ILE HIS LYS GLU ASN GLY TYR ARG LEU SEQRES 14 B 336 TRP VAL ASP ILE ALA LYS VAL TYR PHE SER PRO ARG LEU SEQRES 15 B 336 GLY GLY GLU ARG ALA ARG ILE MET LYS LYS VAL SER LEU SEQRES 16 B 336 ASN ASP VAL VAL VAL ASP MET PHE ALA GLY VAL GLY PRO SEQRES 17 B 336 PHE SER ILE ALA CYS LYS ASN ALA LYS LYS ILE TYR ALA SEQRES 18 B 336 ILE ASP ILE ASN PRO HIS ALA ILE GLU LEU LEU LYS LYS SEQRES 19 B 336 ASN ILE LYS LEU ASN LYS LEU GLU HIS LYS ILE ILE PRO SEQRES 20 B 336 ILE LEU SER ASP VAL ARG GLU VAL ASP VAL LYS GLY ASN SEQRES 21 B 336 ARG VAL ILE MET ASN LEU PRO LYS PHE ALA HIS LYS PHE SEQRES 22 B 336 ILE ASP LYS ALA LEU ASP ILE VAL GLU GLU GLY GLY VAL SEQRES 23 B 336 ILE HIS TYR TYR THR ILE GLY LYS ASP PHE ASP LYS ALA SEQRES 24 B 336 ILE LYS LEU PHE GLU LYS LYS CYS ASP CYS GLU VAL LEU SEQRES 25 B 336 GLU LYS ARG ILE VAL LYS SER TYR ALA PRO ARG GLU TYR SEQRES 26 B 336 ILE LEU ALA LEU ASP PHE LYS ILE ASN LYS LYS SEQRES 1 C 75 G C C G G G G U A G U C U SEQRES 2 C 75 A G G G G C U A G G C A G SEQRES 3 C 75 C G G A C U G C A G A U C SEQRES 4 C 75 C G C C U U A C G U G G G SEQRES 5 C 75 U U C A A A U C C C A C C SEQRES 6 C 75 C C C G G C U C C A SEQRES 1 D 75 G C C G G G G U A G U C U SEQRES 2 D 75 A G G G G C U A G G C A G SEQRES 3 D 75 C G G A C U G C A G A U C SEQRES 4 D 75 C G C C U U A C G U G G G SEQRES 5 D 75 U U C A A A U C C C A C C SEQRES 6 D 75 C C C G G C U C C A HET SAM A 401 27 HET SAM B 402 27 HET MG C 101 1 HET MG C 102 1 HET MG C 103 1 HET MG C 104 1 HET MG C 105 1 HET MG C 106 1 HET MG D 201 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 5 SAM 2(C15 H22 N6 O5 S) FORMUL 7 MG 7(MG 2+) FORMUL 14 HOH *25(H2 O) HELIX 1 1 HIS A 11 ASN A 22 1 12 HELIX 2 2 ASP A 46 LEU A 54 1 9 HELIX 3 3 SER A 75 TYR A 84 1 10 HELIX 4 4 TYR A 84 ASP A 89 1 6 HELIX 5 5 ASP A 113 ILE A 128 1 16 HELIX 6 6 SER A 179 ARG A 181 5 3 HELIX 7 7 LEU A 182 VAL A 193 1 12 HELIX 8 8 GLY A 207 CYS A 213 1 7 HELIX 9 9 ASN A 225 ASN A 239 1 15 HELIX 10 10 ASP A 251 VAL A 255 5 5 HELIX 11 11 PHE A 269 LYS A 272 5 4 HELIX 12 12 PHE A 273 ILE A 280 1 8 HELIX 13 13 PHE A 296 LYS A 305 1 10 HELIX 14 14 HIS B 11 ASN B 22 1 12 HELIX 15 15 ASP B 46 LEU B 54 1 9 HELIX 16 16 SER B 75 GLU B 90 1 16 HELIX 17 17 ASP B 113 ILE B 128 1 16 HELIX 18 18 SER B 179 ARG B 181 5 3 HELIX 19 19 LEU B 182 ALA B 187 1 6 HELIX 20 20 SER B 210 LYS B 214 5 5 HELIX 21 21 ASN B 225 ASN B 239 1 15 HELIX 22 22 ASP B 251 VAL B 255 5 5 HELIX 23 23 ALA B 270 LYS B 272 5 3 HELIX 24 24 PHE B 273 ILE B 280 1 8 HELIX 25 25 PHE B 296 LYS B 306 1 11 SHEET 1 A 4 THR A 32 GLU A 34 0 SHEET 2 A 4 TYR A 37 LEU A 40 -1 O TYR A 39 N THR A 32 SHEET 3 A 4 LEU A 3 ASN A 8 -1 N ILE A 7 O LEU A 38 SHEET 4 A 4 LEU A 60 ASP A 62 -1 O VAL A 61 N CYS A 4 SHEET 1 B 4 ILE A 93 VAL A 100 0 SHEET 2 B 4 LEU A 103 ILE A 108 -1 O GLN A 107 N SER A 94 SHEET 3 B 4 GLY A 132 ARG A 135 1 O PHE A 134 N VAL A 104 SHEET 4 B 4 HIS A 151 GLY A 154 -1 O LEU A 152 N VAL A 133 SHEET 1 C 2 LEU A 159 GLU A 164 0 SHEET 2 C 2 TYR A 167 ASP A 172 -1 O TYR A 167 N GLU A 164 SHEET 1 D 7 ILE A 245 LEU A 249 0 SHEET 2 D 7 ILE A 219 ASP A 223 1 N ILE A 219 O ILE A 246 SHEET 3 D 7 VAL A 199 ASP A 201 1 N ASP A 201 O TYR A 220 SHEET 4 D 7 GLY A 259 MET A 264 1 O ARG A 261 N VAL A 200 SHEET 5 D 7 VAL A 281 GLY A 293 1 O VAL A 286 N ASN A 260 SHEET 6 D 7 GLU A 324 ILE A 333 -1 O LEU A 327 N THR A 291 SHEET 7 D 7 CYS A 309 ALA A 321 -1 N GLU A 310 O LYS A 332 SHEET 1 E 4 THR B 32 GLU B 34 0 SHEET 2 E 4 TYR B 37 PRO B 41 -1 O TYR B 39 N THR B 32 SHEET 3 E 4 LEU B 3 ASN B 8 -1 N ILE B 7 O LEU B 38 SHEET 4 E 4 GLU B 59 ASP B 62 -1 O VAL B 61 N CYS B 4 SHEET 1 F 4 ASP B 98 VAL B 100 0 SHEET 2 F 4 LEU B 103 LEU B 106 -1 O ILE B 105 N ASP B 98 SHEET 3 F 4 GLY B 132 ARG B 136 1 O PHE B 134 N LEU B 106 SHEET 4 F 4 LEU B 149 GLY B 154 -1 O ALA B 153 N VAL B 133 SHEET 1 G 2 LEU B 159 GLU B 164 0 SHEET 2 G 2 TYR B 167 ASP B 172 -1 O LEU B 169 N HIS B 162 SHEET 1 H 7 ILE B 245 PRO B 247 0 SHEET 2 H 7 LYS B 218 ALA B 221 1 N ILE B 219 O ILE B 246 SHEET 3 H 7 VAL B 198 ASP B 201 1 N VAL B 199 O LYS B 218 SHEET 4 H 7 GLY B 259 MET B 264 1 O ARG B 261 N VAL B 198 SHEET 5 H 7 VAL B 281 GLY B 293 1 O HIS B 288 N MET B 264 SHEET 6 H 7 GLU B 324 LYS B 335 -1 O ILE B 333 N GLY B 285 SHEET 7 H 7 ASP B 308 ALA B 321 -1 N LYS B 318 O ILE B 326 SITE 1 AC1 20 GLU A 143 PHE A 144 TYR A 177 PHE A 178 SITE 2 AC1 20 ARG A 186 MET A 202 PHE A 203 GLY A 205 SITE 3 AC1 20 PRO A 208 PHE A 209 ASP A 223 ILE A 224 SITE 4 AC1 20 ASN A 225 SER A 250 ASP A 251 VAL A 252 SITE 5 AC1 20 ASN A 265 PHE A 273 G C 37 U D 46 SITE 1 AC2 17 GLU B 143 PHE B 144 TYR B 177 PHE B 178 SITE 2 AC2 17 SER B 179 ARG B 186 PHE B 203 PRO B 208 SITE 3 AC2 17 PHE B 209 ASP B 223 ILE B 224 ASN B 225 SITE 4 AC2 17 ASP B 251 VAL B 252 ASN B 265 PHE B 273 SITE 5 AC2 17 G D 37 SITE 1 AC3 2 G C 23 G C 24 SITE 1 AC4 1 G C 29 SITE 1 AC5 1 U C 50 SITE 1 AC6 2 U C 8 A C 14 SITE 1 AC7 2 G C 7 G C 49 SITE 1 AC8 3 A D 26 G D 27 HOH D 801 CRYST1 81.838 106.537 134.459 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007437 0.00000