data_308D
# 
_entry.id   308D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.389 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   308D         pdb_0000308d 10.2210/pdb308d/pdb 
RCSB  DDFB70       ?            ?                   
WWPDB D_1000178776 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1997-01-21 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2020-07-29 
5 'Structure model' 1 4 2024-02-21 
6 'Structure model' 1 5 2024-04-03 
# 
loop_
_pdbx_audit_revision_details.ordinal 
_pdbx_audit_revision_details.revision_ordinal 
_pdbx_audit_revision_details.data_content_type 
_pdbx_audit_revision_details.provider 
_pdbx_audit_revision_details.type 
_pdbx_audit_revision_details.description 
_pdbx_audit_revision_details.details 
1 1 'Structure model' repository 'Initial release' ?                          ? 
2 4 'Structure model' repository Remediation       'Carbohydrate remediation' ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' 'Structure summary'         
6 5 'Structure model' 'Data collection'           
7 5 'Structure model' 'Database references'       
8 5 'Structure model' 'Structure summary'         
9 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  4 'Structure model' chem_comp                     
2  4 'Structure model' entity                        
3  4 'Structure model' pdbx_chem_comp_identifier     
4  4 'Structure model' pdbx_entity_nonpoly           
5  4 'Structure model' pdbx_struct_conn_angle        
6  4 'Structure model' struct_conn                   
7  4 'Structure model' struct_site                   
8  4 'Structure model' struct_site_gen               
9  5 'Structure model' chem_comp                     
10 5 'Structure model' chem_comp_atom                
11 5 'Structure model' chem_comp_bond                
12 5 'Structure model' database_2                    
13 6 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_chem_comp.name'                             
2  4 'Structure model' '_chem_comp.type'                             
3  4 'Structure model' '_entity.pdbx_description'                    
4  4 'Structure model' '_pdbx_entity_nonpoly.name'                   
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'  
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id'  
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'   
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'  
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
22 4 'Structure model' '_pdbx_struct_conn_angle.value'               
23 4 'Structure model' '_struct_conn.pdbx_dist_value'                
24 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'             
26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
39 5 'Structure model' '_chem_comp.pdbx_synonyms'                    
40 5 'Structure model' '_database_2.pdbx_DOI'                        
41 5 'Structure model' '_database_2.pdbx_database_accession'         
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        308D 
_pdbx_database_status.recvd_initial_deposition_date   1997-01-15 
_pdbx_database_status.deposit_site                    NDB 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Gao, Y.-G.'          1 
'Robinson, H.'        2 
'Wijsman, E.R.'       3 
'Van Der Marel, G.A.' 4 
'Van Boom, J.H.'      5 
'Wang, A.H.-J.'       6 
# 
_citation.id                        primary 
_citation.title                     
'Binding of Daunomycin to beta-D-Glucosylated DNA Found in Protozoa Trypanosoma brucei Studied by X-Ray Crystallography' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            119 
_citation.page_first                1496 
_citation.page_last                 1497 
_citation.year                      1997 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   -1 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Gao, Y.-G.'          1 ? 
primary 'Robinson, H.'        2 ? 
primary 'Wijsman, E.R.'       3 ? 
primary 'Van Der Marel, G.A.' 4 ? 
primary 'Van Boom, J.H.'      5 ? 
primary 'Wang, A.H.-J.'       6 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
;
1809.217 2   ? ? ? ? 
2 non-polymer man beta-D-glucopyranose               180.156  2   ? ? ? ? 
3 non-polymer syn DAUNOMYCIN                         527.520  2   ? ? ? ? 
4 non-polymer syn 'MAGNESIUM ION'                    24.305   3   ? ? ? ? 
5 water       nat water                              18.015   105 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DT)(DA)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGTACG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 beta-D-glucopyranose BGC 
3 DAUNOMYCIN           DM1 
4 'MAGNESIUM ION'      MG  
5 water                HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DG n 
1 3 DT n 
1 4 DA n 
1 5 DC n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose                 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6'       
180.156 
DA  'DNA linking'                y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?                                    'C10 H14 N5 O6 P' 
331.222 
DC  'DNA linking'                y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?                                    'C9 H14 N3 O7 P'  
307.197 
DG  'DNA linking'                y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?                                    'C10 H14 N5 O7 P' 
347.221 
DM1 non-polymer                  . DAUNOMYCIN                           DAUNORUBICIN                         'C27 H29 N O10'   
527.520 
DT  'DNA linking'                y "THYMIDINE-5'-MONOPHOSPHATE"         ?                                    'C10 H15 N2 O8 P' 
322.208 
HOH non-polymer                  . WATER                                ?                                    'H2 O'            
18.015  
MG  non-polymer                  . 'MAGNESIUM ION'                      ?                                    'Mg 2'            
24.305  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML     1.0 DGlcpb            
BGC 'COMMON NAME'                         GMML     1.0 b-D-glucopyranose 
BGC 'IUPAC CARBOHYDRATE SYMBOL'           PDB-CARE 1.0 b-D-Glcp          
BGC 'SNFG CARBOHYDRATE SYMBOL'            GMML     1.0 Glc               
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1  1  DC DC A . n 
A 1 2 DG 2 2  2  DG DG A . n 
A 1 3 DT 3 3  3  DT DT A . n 
A 1 4 DA 4 4  4  DA DA A . n 
A 1 5 DC 5 5  5  DC DC A . n 
A 1 6 DG 6 6  6  DG DG A . n 
B 1 1 DC 1 7  7  DC DC B . n 
B 1 2 DG 2 8  8  DG DG B . n 
B 1 3 DT 3 9  9  DT DT B . n 
B 1 4 DA 4 10 10 DA DA B . n 
B 1 5 DC 5 11 11 DC DC B . n 
B 1 6 DG 6 12 12 DG DG B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 BGC 1  7   7   BGC BGC A . 
D 3 DM1 1  14  14  DM1 DM1 A . 
E 4 MG  1  16  16  MG  MG  A . 
F 4 MG  1  17  17  MG  MG  A . 
G 2 BGC 1  13  13  BGC BGC B . 
H 3 DM1 1  14  14  DM1 DM1 B . 
I 4 MG  1  15  15  MG  MG  B . 
J 5 HOH 1  18  18  HOH HOH A . 
J 5 HOH 2  19  19  HOH HOH A . 
J 5 HOH 3  22  22  HOH HOH A . 
J 5 HOH 4  23  23  HOH HOH A . 
J 5 HOH 5  24  24  HOH HOH A . 
J 5 HOH 6  25  25  HOH HOH A . 
J 5 HOH 7  27  27  HOH HOH A . 
J 5 HOH 8  29  29  HOH HOH A . 
J 5 HOH 9  30  30  HOH HOH A . 
J 5 HOH 10 31  31  HOH HOH A . 
J 5 HOH 11 32  32  HOH HOH A . 
J 5 HOH 12 34  34  HOH HOH A . 
J 5 HOH 13 35  35  HOH HOH A . 
J 5 HOH 14 36  36  HOH HOH A . 
J 5 HOH 15 37  37  HOH HOH A . 
J 5 HOH 16 38  38  HOH HOH A . 
J 5 HOH 17 39  39  HOH HOH A . 
J 5 HOH 18 41  41  HOH HOH A . 
J 5 HOH 19 42  42  HOH HOH A . 
J 5 HOH 20 44  44  HOH HOH A . 
J 5 HOH 21 47  47  HOH HOH A . 
J 5 HOH 22 48  48  HOH HOH A . 
J 5 HOH 23 50  50  HOH HOH A . 
J 5 HOH 24 51  51  HOH HOH A . 
J 5 HOH 25 52  52  HOH HOH A . 
J 5 HOH 26 56  56  HOH HOH A . 
J 5 HOH 27 57  57  HOH HOH A . 
J 5 HOH 28 58  58  HOH HOH A . 
J 5 HOH 29 59  59  HOH HOH A . 
J 5 HOH 30 60  60  HOH HOH A . 
J 5 HOH 31 61  61  HOH HOH A . 
J 5 HOH 32 62  62  HOH HOH A . 
J 5 HOH 33 64  64  HOH HOH A . 
J 5 HOH 34 65  65  HOH HOH A . 
J 5 HOH 35 66  66  HOH HOH A . 
J 5 HOH 36 68  68  HOH HOH A . 
J 5 HOH 37 69  69  HOH HOH A . 
J 5 HOH 38 70  70  HOH HOH A . 
J 5 HOH 39 71  71  HOH HOH A . 
J 5 HOH 40 72  72  HOH HOH A . 
J 5 HOH 41 73  73  HOH HOH A . 
J 5 HOH 42 74  74  HOH HOH A . 
J 5 HOH 43 75  75  HOH HOH A . 
J 5 HOH 44 76  76  HOH HOH A . 
J 5 HOH 45 81  81  HOH HOH A . 
J 5 HOH 46 83  83  HOH HOH A . 
J 5 HOH 47 84  84  HOH HOH A . 
J 5 HOH 48 87  87  HOH HOH A . 
J 5 HOH 49 92  92  HOH HOH A . 
J 5 HOH 50 93  93  HOH HOH A . 
J 5 HOH 51 94  94  HOH HOH A . 
J 5 HOH 52 95  95  HOH HOH A . 
J 5 HOH 53 96  96  HOH HOH A . 
J 5 HOH 54 97  97  HOH HOH A . 
J 5 HOH 55 98  98  HOH HOH A . 
J 5 HOH 56 99  99  HOH HOH A . 
J 5 HOH 57 100 100 HOH HOH A . 
J 5 HOH 58 103 103 HOH HOH A . 
J 5 HOH 59 106 106 HOH HOH A . 
J 5 HOH 60 107 107 HOH HOH A . 
J 5 HOH 61 108 108 HOH HOH A . 
J 5 HOH 62 113 113 HOH HOH A . 
J 5 HOH 63 114 114 HOH HOH A . 
J 5 HOH 64 115 115 HOH HOH A . 
J 5 HOH 65 116 116 HOH HOH A . 
J 5 HOH 66 117 117 HOH HOH A . 
J 5 HOH 67 118 118 HOH HOH A . 
J 5 HOH 68 119 119 HOH HOH A . 
J 5 HOH 69 120 120 HOH HOH A . 
J 5 HOH 70 121 121 HOH HOH A . 
J 5 HOH 71 122 122 HOH HOH A . 
K 5 HOH 1  20  20  HOH HOH B . 
K 5 HOH 2  21  21  HOH HOH B . 
K 5 HOH 3  26  26  HOH HOH B . 
K 5 HOH 4  28  28  HOH HOH B . 
K 5 HOH 5  33  33  HOH HOH B . 
K 5 HOH 6  40  40  HOH HOH B . 
K 5 HOH 7  43  43  HOH HOH B . 
K 5 HOH 8  45  45  HOH HOH B . 
K 5 HOH 9  46  46  HOH HOH B . 
K 5 HOH 10 49  49  HOH HOH B . 
K 5 HOH 11 53  53  HOH HOH B . 
K 5 HOH 12 54  54  HOH HOH B . 
K 5 HOH 13 55  55  HOH HOH B . 
K 5 HOH 14 63  63  HOH HOH B . 
K 5 HOH 15 67  67  HOH HOH B . 
K 5 HOH 16 77  77  HOH HOH B . 
K 5 HOH 17 78  78  HOH HOH B . 
K 5 HOH 18 79  79  HOH HOH B . 
K 5 HOH 19 80  80  HOH HOH B . 
K 5 HOH 20 82  82  HOH HOH B . 
K 5 HOH 21 85  85  HOH HOH B . 
K 5 HOH 22 86  86  HOH HOH B . 
K 5 HOH 23 88  88  HOH HOH B . 
K 5 HOH 24 89  89  HOH HOH B . 
K 5 HOH 25 90  90  HOH HOH B . 
K 5 HOH 26 91  91  HOH HOH B . 
K 5 HOH 27 101 101 HOH HOH B . 
K 5 HOH 28 102 102 HOH HOH B . 
K 5 HOH 29 104 104 HOH HOH B . 
K 5 HOH 30 105 105 HOH HOH B . 
K 5 HOH 31 109 109 HOH HOH B . 
K 5 HOH 32 110 110 HOH HOH B . 
K 5 HOH 33 111 111 HOH HOH B . 
K 5 HOH 34 112 112 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
ULTIMA 'model building' .   ? 1 
X-PLOR refinement       3.1 ? 2 
R-AXIS 'data reduction' .   ? 3 
ULTIMA phasing          .   ? 4 
# 
_cell.entry_id           308D 
_cell.length_a           18.619 
_cell.length_b           20.096 
_cell.length_c           26.553 
_cell.angle_alpha        69.09 
_cell.angle_beta         90.40 
_cell.angle_gamma        108.03 
_cell.Z_PDB              2 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         308D 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          308D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   49.22 
_exptl_crystal.density_Matthews      2.42 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            293.00 
_exptl_crystal_grow.temp_details    'ROOM TEMPERATURE' 
_exptl_crystal_grow.pH              6.00 
_exptl_crystal_grow.pdbx_details    'pH 6.00, VAPOR DIFFUSION, temperature 293.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 MGCL2           ? ? ? 
1 4 1 'NA CACODYLATE' ? ? ? 
1 5 1 SPERMINE        ? ? ? 
1 6 1 DIOXANE         ? ? ? 
1 7 2 WATER           ? ? ? 
1 8 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           293.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1996-08-26 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     308D 
_reflns.observed_criterion_sigma_I   2.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             15.000 
_reflns.d_resolution_high            1.500 
_reflns.number_obs                   4688 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         86.000 
_reflns.pdbx_Rmerge_I_obs            0.0960000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 308D 
_refine.ls_number_reflns_obs                     4678 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            1.500 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1750000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.1750000 
_refine.ls_R_factor_R_free                       0.2210000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               13.40 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      DDF001 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   240 
_refine_hist.pdbx_number_atoms_ligand         103 
_refine_hist.number_atoms_solvent             105 
_refine_hist.number_atoms_total               448 
_refine_hist.d_res_high                       1.500 
_refine_hist.d_res_low                        10.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.019 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             3.10  ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          308D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  308D 
_struct.title                     
'BINDING OF DAUNOMYCIN TO B-D-GLUCOSYLATED DNA FOUND IN PROTOZOA TRYPANOSOMA BRUCEI STUDIED BY X-RAY CRYSTALLOGRAPH' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        308D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
G N N 2 ? 
H N N 3 ? 
I N N 4 ? 
J N N 5 ? 
K N N 5 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    308D 
_struct_ref.pdbx_db_accession          308D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 308D A 1 ? 6 ? 308D 1 ? 6  ? 1 6  
2 1 308D B 1 ? 6 ? 308D 7 ? 12 ? 7 12 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J,K 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale one ? A DT  3 C7  ? ? ? 1_555 C BGC . O1 ? ? A DT  3   A BGC 7   1_555 ? ? ? ? ? ? ?            1.409 ? ? 
covale2  covale one ? B DT  3 C7  ? ? ? 1_555 G BGC . O1 ? ? B DT  9   B BGC 13  1_555 ? ? ? ? ? ? ?            1.400 ? ? 
metalc1  metalc ?   ? A DT  3 OP1 ? ? ? 1_555 E MG  . MG ? ? A DT  3   A MG  16  1_555 ? ? ? ? ? ? ?            2.204 ? ? 
metalc2  metalc ?   ? A DA  4 OP2 ? ? ? 1_555 F MG  . MG ? ? A DA  4   A MG  17  1_555 ? ? ? ? ? ? ?            2.237 ? ? 
metalc3  metalc ?   ? E MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  16  A HOH 113 1_555 ? ? ? ? ? ? ?            1.953 ? ? 
metalc4  metalc ?   ? E MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  16  A HOH 114 1_555 ? ? ? ? ? ? ?            1.954 ? ? 
metalc5  metalc ?   ? E MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  16  A HOH 115 1_555 ? ? ? ? ? ? ?            1.944 ? ? 
metalc6  metalc ?   ? E MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  16  A HOH 116 1_555 ? ? ? ? ? ? ?            1.892 ? ? 
metalc7  metalc ?   ? E MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  16  A HOH 117 1_555 ? ? ? ? ? ? ?            1.934 ? ? 
metalc8  metalc ?   ? F MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  17  A HOH 118 1_555 ? ? ? ? ? ? ?            1.945 ? ? 
metalc9  metalc ?   ? F MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  17  A HOH 119 1_555 ? ? ? ? ? ? ?            1.943 ? ? 
metalc10 metalc ?   ? F MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  17  A HOH 120 1_555 ? ? ? ? ? ? ?            1.930 ? ? 
metalc11 metalc ?   ? F MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  17  A HOH 121 1_555 ? ? ? ? ? ? ?            1.938 ? ? 
metalc12 metalc ?   ? F MG  . MG  ? ? ? 1_555 J HOH . O  ? ? A MG  17  A HOH 122 1_555 ? ? ? ? ? ? ?            1.951 ? ? 
metalc13 metalc ?   ? J HOH . O   ? ? ? 1_555 I MG  . MG ? ? A HOH 107 B MG  15  1_555 ? ? ? ? ? ? ?            1.924 ? ? 
metalc14 metalc ?   ? J HOH . O   ? ? ? 1_555 I MG  . MG ? ? A HOH 108 B MG  15  1_555 ? ? ? ? ? ? ?            1.954 ? ? 
metalc15 metalc ?   ? I MG  . MG  ? ? ? 1_555 K HOH . O  ? ? B MG  15  B HOH 109 1_555 ? ? ? ? ? ? ?            1.926 ? ? 
metalc16 metalc ?   ? I MG  . MG  ? ? ? 1_555 K HOH . O  ? ? B MG  15  B HOH 110 1_555 ? ? ? ? ? ? ?            1.907 ? ? 
metalc17 metalc ?   ? I MG  . MG  ? ? ? 1_555 K HOH . O  ? ? B MG  15  B HOH 111 1_555 ? ? ? ? ? ? ?            1.892 ? ? 
metalc18 metalc ?   ? I MG  . MG  ? ? ? 1_555 K HOH . O  ? ? B MG  15  B HOH 112 1_555 ? ? ? ? ? ? ?            1.950 ? ? 
hydrog1  hydrog ?   ? A DC  1 N3  ? ? ? 1_555 B DG  6 N1 ? ? A DC  1   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?   ? A DC  1 N4  ? ? ? 1_555 B DG  6 O6 ? ? A DC  1   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?   ? A DC  1 O2  ? ? ? 1_555 B DG  6 N2 ? ? A DC  1   B DG  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?   ? A DG  2 N1  ? ? ? 1_555 B DC  5 N3 ? ? A DG  2   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?   ? A DG  2 N2  ? ? ? 1_555 B DC  5 O2 ? ? A DG  2   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?   ? A DG  2 O6  ? ? ? 1_555 B DC  5 N4 ? ? A DG  2   B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?   ? A DT  3 N3  ? ? ? 1_555 B DA  4 N1 ? ? A DT  3   B DA  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?   ? A DT  3 O4  ? ? ? 1_555 B DA  4 N6 ? ? A DT  3   B DA  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?   ? A DA  4 N1  ? ? ? 1_555 B DT  3 N3 ? ? A DA  4   B DT  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?   ? A DA  4 N6  ? ? ? 1_555 B DT  3 O4 ? ? A DA  4   B DT  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?   ? A DC  5 N3  ? ? ? 1_555 B DG  2 N1 ? ? A DC  5   B DG  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?   ? A DC  5 N4  ? ? ? 1_555 B DG  2 O6 ? ? A DC  5   B DG  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?   ? A DC  5 O2  ? ? ? 1_555 B DG  2 N2 ? ? A DC  5   B DG  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?   ? A DG  6 N1  ? ? ? 1_555 B DC  1 N3 ? ? A DG  6   B DC  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?   ? A DG  6 N2  ? ? ? 1_555 B DC  1 O2 ? ? A DG  6   B DC  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?   ? A DG  6 O6  ? ? ? 1_555 B DC  1 N4 ? ? A DG  6   B DC  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  OP1 ? A DT  3 ? A DT  3   ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 113 ? 1_555 91.8  ? 
2  OP1 ? A DT  3 ? A DT  3   ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 114 ? 1_555 98.3  ? 
3  O   ? J HOH . ? A HOH 113 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 114 ? 1_555 169.8 ? 
4  OP1 ? A DT  3 ? A DT  3   ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 115 ? 1_555 89.8  ? 
5  O   ? J HOH . ? A HOH 113 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 115 ? 1_555 88.3  ? 
6  O   ? J HOH . ? A HOH 114 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 115 ? 1_555 90.1  ? 
7  OP1 ? A DT  3 ? A DT  3   ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 116 ? 1_555 175.2 ? 
8  O   ? J HOH . ? A HOH 113 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 116 ? 1_555 83.5  ? 
9  O   ? J HOH . ? A HOH 114 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 116 ? 1_555 86.4  ? 
10 O   ? J HOH . ? A HOH 115 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 116 ? 1_555 89.0  ? 
11 OP1 ? A DT  3 ? A DT  3   ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 117 ? 1_555 95.1  ? 
12 O   ? J HOH . ? A HOH 113 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 117 ? 1_555 92.3  ? 
13 O   ? J HOH . ? A HOH 114 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 117 ? 1_555 88.4  ? 
14 O   ? J HOH . ? A HOH 115 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 117 ? 1_555 175.1 ? 
15 O   ? J HOH . ? A HOH 116 ? 1_555 MG ? E MG . ? A MG 16 ? 1_555 O ? J HOH . ? A HOH 117 ? 1_555 86.2  ? 
16 OP2 ? A DA  4 ? A DA  4   ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 118 ? 1_555 98.4  ? 
17 OP2 ? A DA  4 ? A DA  4   ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 119 ? 1_555 90.9  ? 
18 O   ? J HOH . ? A HOH 118 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 119 ? 1_555 170.1 ? 
19 OP2 ? A DA  4 ? A DA  4   ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 120 ? 1_555 96.8  ? 
20 O   ? J HOH . ? A HOH 118 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 120 ? 1_555 86.6  ? 
21 O   ? J HOH . ? A HOH 119 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 120 ? 1_555 89.0  ? 
22 OP2 ? A DA  4 ? A DA  4   ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 121 ? 1_555 174.8 ? 
23 O   ? J HOH . ? A HOH 118 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 121 ? 1_555 85.9  ? 
24 O   ? J HOH . ? A HOH 119 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 121 ? 1_555 85.0  ? 
25 O   ? J HOH . ? A HOH 120 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 121 ? 1_555 86.3  ? 
26 OP2 ? A DA  4 ? A DA  4   ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 122 ? 1_555 90.3  ? 
27 O   ? J HOH . ? A HOH 118 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 122 ? 1_555 90.5  ? 
28 O   ? J HOH . ? A HOH 119 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 122 ? 1_555 92.9  ? 
29 O   ? J HOH . ? A HOH 120 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 122 ? 1_555 172.7 ? 
30 O   ? J HOH . ? A HOH 121 ? 1_555 MG ? F MG . ? A MG 17 ? 1_555 O ? J HOH . ? A HOH 122 ? 1_555 86.8  ? 
31 O   ? J HOH . ? A HOH 107 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? J HOH . ? A HOH 108 ? 1_555 176.6 ? 
32 O   ? J HOH . ? A HOH 107 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 109 ? 1_555 89.9  ? 
33 O   ? J HOH . ? A HOH 108 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 109 ? 1_555 90.5  ? 
34 O   ? J HOH . ? A HOH 107 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 110 ? 1_555 87.3  ? 
35 O   ? J HOH . ? A HOH 108 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 110 ? 1_555 89.4  ? 
36 O   ? K HOH . ? B HOH 109 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 110 ? 1_555 91.4  ? 
37 O   ? J HOH . ? A HOH 107 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 111 ? 1_555 91.4  ? 
38 O   ? J HOH . ? A HOH 108 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 111 ? 1_555 88.4  ? 
39 O   ? K HOH . ? B HOH 109 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 111 ? 1_555 176.9 ? 
40 O   ? K HOH . ? B HOH 110 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 111 ? 1_555 91.5  ? 
41 O   ? J HOH . ? A HOH 107 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 112 ? 1_555 88.6  ? 
42 O   ? J HOH . ? A HOH 108 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 112 ? 1_555 94.8  ? 
43 O   ? K HOH . ? B HOH 109 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 112 ? 1_555 89.7  ? 
44 O   ? K HOH . ? B HOH 110 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 112 ? 1_555 175.7 ? 
45 O   ? K HOH . ? B HOH 111 ? 1_555 MG ? I MG . ? B MG 15 ? 1_555 O ? K HOH . ? B HOH 112 ? 1_555 87.5  ? 
# 
_struct_site.id                   'DRUG BINDING SITE' 
_struct_site.pdbx_evidence_code   ? 
_struct_site.pdbx_auth_asym_id    ? 
_struct_site.pdbx_auth_comp_id    ? 
_struct_site.pdbx_auth_seq_id     ? 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    ? 
_struct_site.details              ? 
# 
_pdbx_validate_rmsd_bond.id                        1 
_pdbx_validate_rmsd_bond.PDB_model_num             1 
_pdbx_validate_rmsd_bond.auth_atom_id_1            "C5'" 
_pdbx_validate_rmsd_bond.auth_asym_id_1            A 
_pdbx_validate_rmsd_bond.auth_comp_id_1            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_1             1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1            ? 
_pdbx_validate_rmsd_bond.label_alt_id_1            ? 
_pdbx_validate_rmsd_bond.auth_atom_id_2            "C4'" 
_pdbx_validate_rmsd_bond.auth_asym_id_2            A 
_pdbx_validate_rmsd_bond.auth_comp_id_2            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_2             1 
_pdbx_validate_rmsd_bond.PDB_ins_code_2            ? 
_pdbx_validate_rmsd_bond.label_alt_id_2            ? 
_pdbx_validate_rmsd_bond.bond_value                1.569 
_pdbx_validate_rmsd_bond.bond_target_value         1.512 
_pdbx_validate_rmsd_bond.bond_deviation            0.057 
_pdbx_validate_rmsd_bond.bond_standard_deviation   0.007 
_pdbx_validate_rmsd_bond.linker_flag               N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1    A DC 1 ? ? 110.15 108.30 1.85  0.30 N 
2 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P     A DT 3 ? ? 127.28 119.70 7.58  1.20 Y 
3 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 109.64 106.00 3.64  0.60 N 
4 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.81 110.10 -7.29 1.00 N 
5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1    A DC 5 ? ? 111.02 108.30 2.72  0.30 N 
6 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1    B DC 7 ? ? 111.84 108.30 3.54  0.30 N 
7 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 102.87 110.10 -7.23 1.00 N 
8 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9    B DG 8 ? ? 110.52 108.30 2.22  0.30 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DC A 5  ? ? 0.065 'SIDE CHAIN' 
2 1 DC B 11 ? ? 0.085 'SIDE CHAIN' 
# 
_struct_site_keywords.site_id   'DRUG BINDING SITE' 
_struct_site_keywords.text      INTERCALATION 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BGC C2     C  N R 1   
BGC C3     C  N S 2   
BGC C4     C  N S 3   
BGC C5     C  N R 4   
BGC C6     C  N N 5   
BGC C1     C  N R 6   
BGC O1     O  N N 7   
BGC O2     O  N N 8   
BGC O3     O  N N 9   
BGC O4     O  N N 10  
BGC O5     O  N N 11  
BGC O6     O  N N 12  
BGC H2     H  N N 13  
BGC H3     H  N N 14  
BGC H4     H  N N 15  
BGC H5     H  N N 16  
BGC H61    H  N N 17  
BGC H62    H  N N 18  
BGC H1     H  N N 19  
BGC HO1    H  N N 20  
BGC HO2    H  N N 21  
BGC HO3    H  N N 22  
BGC HO4    H  N N 23  
BGC HO6    H  N N 24  
DA  OP3    O  N N 25  
DA  P      P  N N 26  
DA  OP1    O  N N 27  
DA  OP2    O  N N 28  
DA  "O5'"  O  N N 29  
DA  "C5'"  C  N N 30  
DA  "C4'"  C  N R 31  
DA  "O4'"  O  N N 32  
DA  "C3'"  C  N S 33  
DA  "O3'"  O  N N 34  
DA  "C2'"  C  N N 35  
DA  "C1'"  C  N R 36  
DA  N9     N  Y N 37  
DA  C8     C  Y N 38  
DA  N7     N  Y N 39  
DA  C5     C  Y N 40  
DA  C6     C  Y N 41  
DA  N6     N  N N 42  
DA  N1     N  Y N 43  
DA  C2     C  Y N 44  
DA  N3     N  Y N 45  
DA  C4     C  Y N 46  
DA  HOP3   H  N N 47  
DA  HOP2   H  N N 48  
DA  "H5'"  H  N N 49  
DA  "H5''" H  N N 50  
DA  "H4'"  H  N N 51  
DA  "H3'"  H  N N 52  
DA  "HO3'" H  N N 53  
DA  "H2'"  H  N N 54  
DA  "H2''" H  N N 55  
DA  "H1'"  H  N N 56  
DA  H8     H  N N 57  
DA  H61    H  N N 58  
DA  H62    H  N N 59  
DA  H2     H  N N 60  
DC  OP3    O  N N 61  
DC  P      P  N N 62  
DC  OP1    O  N N 63  
DC  OP2    O  N N 64  
DC  "O5'"  O  N N 65  
DC  "C5'"  C  N N 66  
DC  "C4'"  C  N R 67  
DC  "O4'"  O  N N 68  
DC  "C3'"  C  N S 69  
DC  "O3'"  O  N N 70  
DC  "C2'"  C  N N 71  
DC  "C1'"  C  N R 72  
DC  N1     N  N N 73  
DC  C2     C  N N 74  
DC  O2     O  N N 75  
DC  N3     N  N N 76  
DC  C4     C  N N 77  
DC  N4     N  N N 78  
DC  C5     C  N N 79  
DC  C6     C  N N 80  
DC  HOP3   H  N N 81  
DC  HOP2   H  N N 82  
DC  "H5'"  H  N N 83  
DC  "H5''" H  N N 84  
DC  "H4'"  H  N N 85  
DC  "H3'"  H  N N 86  
DC  "HO3'" H  N N 87  
DC  "H2'"  H  N N 88  
DC  "H2''" H  N N 89  
DC  "H1'"  H  N N 90  
DC  H41    H  N N 91  
DC  H42    H  N N 92  
DC  H5     H  N N 93  
DC  H6     H  N N 94  
DG  OP3    O  N N 95  
DG  P      P  N N 96  
DG  OP1    O  N N 97  
DG  OP2    O  N N 98  
DG  "O5'"  O  N N 99  
DG  "C5'"  C  N N 100 
DG  "C4'"  C  N R 101 
DG  "O4'"  O  N N 102 
DG  "C3'"  C  N S 103 
DG  "O3'"  O  N N 104 
DG  "C2'"  C  N N 105 
DG  "C1'"  C  N R 106 
DG  N9     N  Y N 107 
DG  C8     C  Y N 108 
DG  N7     N  Y N 109 
DG  C5     C  Y N 110 
DG  C6     C  N N 111 
DG  O6     O  N N 112 
DG  N1     N  N N 113 
DG  C2     C  N N 114 
DG  N2     N  N N 115 
DG  N3     N  N N 116 
DG  C4     C  Y N 117 
DG  HOP3   H  N N 118 
DG  HOP2   H  N N 119 
DG  "H5'"  H  N N 120 
DG  "H5''" H  N N 121 
DG  "H4'"  H  N N 122 
DG  "H3'"  H  N N 123 
DG  "HO3'" H  N N 124 
DG  "H2'"  H  N N 125 
DG  "H2''" H  N N 126 
DG  "H1'"  H  N N 127 
DG  H8     H  N N 128 
DG  H1     H  N N 129 
DG  H21    H  N N 130 
DG  H22    H  N N 131 
DM1 C1     C  Y N 132 
DM1 C2     C  Y N 133 
DM1 C3     C  Y N 134 
DM1 C4     C  Y N 135 
DM1 O4     O  N N 136 
DM1 C5     C  Y N 137 
DM1 C6     C  N N 138 
DM1 O6     O  N N 139 
DM1 C7     C  Y N 140 
DM1 C8     C  Y N 141 
DM1 O8     O  N N 142 
DM1 C9     C  Y N 143 
DM1 C10    C  N S 144 
DM1 O10    O  N N 145 
DM1 C11    C  N N 146 
DM1 C12    C  N S 147 
DM1 O12    O  N N 148 
DM1 C13    C  N N 149 
DM1 O13    O  N N 150 
DM1 C14    C  N N 151 
DM1 C15    C  N N 152 
DM1 C16    C  Y N 153 
DM1 C17    C  Y N 154 
DM1 O17    O  N N 155 
DM1 C18    C  Y N 156 
DM1 C19    C  N N 157 
DM1 O19    O  N N 158 
DM1 C20    C  Y N 159 
DM1 C21    C  N N 160 
DM1 "C1'"  C  N R 161 
DM1 "C2'"  C  N N 162 
DM1 "C3'"  C  N S 163 
DM1 "N3'"  N  N N 164 
DM1 "C4'"  C  N S 165 
DM1 "O4'"  O  N N 166 
DM1 "C5'"  C  N S 167 
DM1 "O5'"  O  N N 168 
DM1 "C6'"  C  N N 169 
DM1 H1     H  N N 170 
DM1 H2     H  N N 171 
DM1 H3     H  N N 172 
DM1 HO8    H  N N 173 
DM1 H10    H  N N 174 
DM1 H111   H  N N 175 
DM1 H112   H  N N 176 
DM1 HO12   H  N N 177 
DM1 H141   H  N N 178 
DM1 H142   H  N N 179 
DM1 H143   H  N N 180 
DM1 H151   H  N N 181 
DM1 H152   H  N N 182 
DM1 HO17   H  N N 183 
DM1 H211   H  N N 184 
DM1 H212   H  N N 185 
DM1 H213   H  N N 186 
DM1 "H1'"  H  N N 187 
DM1 "H2'1" H  N N 188 
DM1 "H2'2" H  N N 189 
DM1 "H3'"  H  N N 190 
DM1 "HN'1" H  N N 191 
DM1 "HN'2" H  N N 192 
DM1 "H4'"  H  N N 193 
DM1 "HO4'" H  N N 194 
DM1 "H5'"  H  N N 195 
DM1 "H6'1" H  N N 196 
DM1 "H6'2" H  N N 197 
DM1 "H6'3" H  N N 198 
DT  OP3    O  N N 199 
DT  P      P  N N 200 
DT  OP1    O  N N 201 
DT  OP2    O  N N 202 
DT  "O5'"  O  N N 203 
DT  "C5'"  C  N N 204 
DT  "C4'"  C  N R 205 
DT  "O4'"  O  N N 206 
DT  "C3'"  C  N S 207 
DT  "O3'"  O  N N 208 
DT  "C2'"  C  N N 209 
DT  "C1'"  C  N R 210 
DT  N1     N  N N 211 
DT  C2     C  N N 212 
DT  O2     O  N N 213 
DT  N3     N  N N 214 
DT  C4     C  N N 215 
DT  O4     O  N N 216 
DT  C5     C  N N 217 
DT  C7     C  N N 218 
DT  C6     C  N N 219 
DT  HOP3   H  N N 220 
DT  HOP2   H  N N 221 
DT  "H5'"  H  N N 222 
DT  "H5''" H  N N 223 
DT  "H4'"  H  N N 224 
DT  "H3'"  H  N N 225 
DT  "HO3'" H  N N 226 
DT  "H2'"  H  N N 227 
DT  "H2''" H  N N 228 
DT  "H1'"  H  N N 229 
DT  H3     H  N N 230 
DT  H71    H  N N 231 
DT  H72    H  N N 232 
DT  H73    H  N N 233 
DT  H6     H  N N 234 
HOH O      O  N N 235 
HOH H1     H  N N 236 
HOH H2     H  N N 237 
MG  MG     MG N N 238 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BGC C2    C3     sing N N 1   
BGC C2    C1     sing N N 2   
BGC C2    O2     sing N N 3   
BGC C2    H2     sing N N 4   
BGC C3    C4     sing N N 5   
BGC C3    O3     sing N N 6   
BGC C3    H3     sing N N 7   
BGC C4    C5     sing N N 8   
BGC C4    O4     sing N N 9   
BGC C4    H4     sing N N 10  
BGC C5    C6     sing N N 11  
BGC C5    O5     sing N N 12  
BGC C5    H5     sing N N 13  
BGC C6    O6     sing N N 14  
BGC C6    H61    sing N N 15  
BGC C6    H62    sing N N 16  
BGC C1    O1     sing N N 17  
BGC C1    O5     sing N N 18  
BGC C1    H1     sing N N 19  
BGC O1    HO1    sing N N 20  
BGC O2    HO2    sing N N 21  
BGC O3    HO3    sing N N 22  
BGC O4    HO4    sing N N 23  
BGC O6    HO6    sing N N 24  
DA  OP3   P      sing N N 25  
DA  OP3   HOP3   sing N N 26  
DA  P     OP1    doub N N 27  
DA  P     OP2    sing N N 28  
DA  P     "O5'"  sing N N 29  
DA  OP2   HOP2   sing N N 30  
DA  "O5'" "C5'"  sing N N 31  
DA  "C5'" "C4'"  sing N N 32  
DA  "C5'" "H5'"  sing N N 33  
DA  "C5'" "H5''" sing N N 34  
DA  "C4'" "O4'"  sing N N 35  
DA  "C4'" "C3'"  sing N N 36  
DA  "C4'" "H4'"  sing N N 37  
DA  "O4'" "C1'"  sing N N 38  
DA  "C3'" "O3'"  sing N N 39  
DA  "C3'" "C2'"  sing N N 40  
DA  "C3'" "H3'"  sing N N 41  
DA  "O3'" "HO3'" sing N N 42  
DA  "C2'" "C1'"  sing N N 43  
DA  "C2'" "H2'"  sing N N 44  
DA  "C2'" "H2''" sing N N 45  
DA  "C1'" N9     sing N N 46  
DA  "C1'" "H1'"  sing N N 47  
DA  N9    C8     sing Y N 48  
DA  N9    C4     sing Y N 49  
DA  C8    N7     doub Y N 50  
DA  C8    H8     sing N N 51  
DA  N7    C5     sing Y N 52  
DA  C5    C6     sing Y N 53  
DA  C5    C4     doub Y N 54  
DA  C6    N6     sing N N 55  
DA  C6    N1     doub Y N 56  
DA  N6    H61    sing N N 57  
DA  N6    H62    sing N N 58  
DA  N1    C2     sing Y N 59  
DA  C2    N3     doub Y N 60  
DA  C2    H2     sing N N 61  
DA  N3    C4     sing Y N 62  
DC  OP3   P      sing N N 63  
DC  OP3   HOP3   sing N N 64  
DC  P     OP1    doub N N 65  
DC  P     OP2    sing N N 66  
DC  P     "O5'"  sing N N 67  
DC  OP2   HOP2   sing N N 68  
DC  "O5'" "C5'"  sing N N 69  
DC  "C5'" "C4'"  sing N N 70  
DC  "C5'" "H5'"  sing N N 71  
DC  "C5'" "H5''" sing N N 72  
DC  "C4'" "O4'"  sing N N 73  
DC  "C4'" "C3'"  sing N N 74  
DC  "C4'" "H4'"  sing N N 75  
DC  "O4'" "C1'"  sing N N 76  
DC  "C3'" "O3'"  sing N N 77  
DC  "C3'" "C2'"  sing N N 78  
DC  "C3'" "H3'"  sing N N 79  
DC  "O3'" "HO3'" sing N N 80  
DC  "C2'" "C1'"  sing N N 81  
DC  "C2'" "H2'"  sing N N 82  
DC  "C2'" "H2''" sing N N 83  
DC  "C1'" N1     sing N N 84  
DC  "C1'" "H1'"  sing N N 85  
DC  N1    C2     sing N N 86  
DC  N1    C6     sing N N 87  
DC  C2    O2     doub N N 88  
DC  C2    N3     sing N N 89  
DC  N3    C4     doub N N 90  
DC  C4    N4     sing N N 91  
DC  C4    C5     sing N N 92  
DC  N4    H41    sing N N 93  
DC  N4    H42    sing N N 94  
DC  C5    C6     doub N N 95  
DC  C5    H5     sing N N 96  
DC  C6    H6     sing N N 97  
DG  OP3   P      sing N N 98  
DG  OP3   HOP3   sing N N 99  
DG  P     OP1    doub N N 100 
DG  P     OP2    sing N N 101 
DG  P     "O5'"  sing N N 102 
DG  OP2   HOP2   sing N N 103 
DG  "O5'" "C5'"  sing N N 104 
DG  "C5'" "C4'"  sing N N 105 
DG  "C5'" "H5'"  sing N N 106 
DG  "C5'" "H5''" sing N N 107 
DG  "C4'" "O4'"  sing N N 108 
DG  "C4'" "C3'"  sing N N 109 
DG  "C4'" "H4'"  sing N N 110 
DG  "O4'" "C1'"  sing N N 111 
DG  "C3'" "O3'"  sing N N 112 
DG  "C3'" "C2'"  sing N N 113 
DG  "C3'" "H3'"  sing N N 114 
DG  "O3'" "HO3'" sing N N 115 
DG  "C2'" "C1'"  sing N N 116 
DG  "C2'" "H2'"  sing N N 117 
DG  "C2'" "H2''" sing N N 118 
DG  "C1'" N9     sing N N 119 
DG  "C1'" "H1'"  sing N N 120 
DG  N9    C8     sing Y N 121 
DG  N9    C4     sing Y N 122 
DG  C8    N7     doub Y N 123 
DG  C8    H8     sing N N 124 
DG  N7    C5     sing Y N 125 
DG  C5    C6     sing N N 126 
DG  C5    C4     doub Y N 127 
DG  C6    O6     doub N N 128 
DG  C6    N1     sing N N 129 
DG  N1    C2     sing N N 130 
DG  N1    H1     sing N N 131 
DG  C2    N2     sing N N 132 
DG  C2    N3     doub N N 133 
DG  N2    H21    sing N N 134 
DG  N2    H22    sing N N 135 
DG  N3    C4     sing N N 136 
DM1 C1    C2     doub Y N 137 
DM1 C1    C20    sing Y N 138 
DM1 C1    H1     sing N N 139 
DM1 C2    C3     sing Y N 140 
DM1 C2    H2     sing N N 141 
DM1 C3    C4     doub Y N 142 
DM1 C3    H3     sing N N 143 
DM1 C4    O4     sing N N 144 
DM1 C4    C5     sing Y N 145 
DM1 O4    C21    sing N N 146 
DM1 C5    C6     sing N N 147 
DM1 C5    C20    doub Y N 148 
DM1 C6    O6     doub N N 149 
DM1 C6    C7     sing N N 150 
DM1 C7    C8     doub Y N 151 
DM1 C7    C18    sing Y N 152 
DM1 C8    O8     sing N N 153 
DM1 C8    C9     sing Y N 154 
DM1 O8    HO8    sing N N 155 
DM1 C9    C10    sing N N 156 
DM1 C9    C16    doub Y N 157 
DM1 C10   O10    sing N N 158 
DM1 C10   C11    sing N N 159 
DM1 C10   H10    sing N N 160 
DM1 O10   "C1'"  sing N N 161 
DM1 C11   C12    sing N N 162 
DM1 C11   H111   sing N N 163 
DM1 C11   H112   sing N N 164 
DM1 C12   O12    sing N N 165 
DM1 C12   C13    sing N N 166 
DM1 C12   C15    sing N N 167 
DM1 O12   HO12   sing N N 168 
DM1 C13   O13    doub N N 169 
DM1 C13   C14    sing N N 170 
DM1 C14   H141   sing N N 171 
DM1 C14   H142   sing N N 172 
DM1 C14   H143   sing N N 173 
DM1 C15   C16    sing N N 174 
DM1 C15   H151   sing N N 175 
DM1 C15   H152   sing N N 176 
DM1 C16   C17    sing Y N 177 
DM1 C17   O17    sing N N 178 
DM1 C17   C18    doub Y N 179 
DM1 O17   HO17   sing N N 180 
DM1 C18   C19    sing N N 181 
DM1 C19   O19    doub N N 182 
DM1 C19   C20    sing N N 183 
DM1 C21   H211   sing N N 184 
DM1 C21   H212   sing N N 185 
DM1 C21   H213   sing N N 186 
DM1 "C1'" "C2'"  sing N N 187 
DM1 "C1'" "O5'"  sing N N 188 
DM1 "C1'" "H1'"  sing N N 189 
DM1 "C2'" "C3'"  sing N N 190 
DM1 "C2'" "H2'1" sing N N 191 
DM1 "C2'" "H2'2" sing N N 192 
DM1 "C3'" "N3'"  sing N N 193 
DM1 "C3'" "C4'"  sing N N 194 
DM1 "C3'" "H3'"  sing N N 195 
DM1 "N3'" "HN'1" sing N N 196 
DM1 "N3'" "HN'2" sing N N 197 
DM1 "C4'" "O4'"  sing N N 198 
DM1 "C4'" "C5'"  sing N N 199 
DM1 "C4'" "H4'"  sing N N 200 
DM1 "O4'" "HO4'" sing N N 201 
DM1 "C5'" "O5'"  sing N N 202 
DM1 "C5'" "C6'"  sing N N 203 
DM1 "C5'" "H5'"  sing N N 204 
DM1 "C6'" "H6'1" sing N N 205 
DM1 "C6'" "H6'2" sing N N 206 
DM1 "C6'" "H6'3" sing N N 207 
DT  OP3   P      sing N N 208 
DT  OP3   HOP3   sing N N 209 
DT  P     OP1    doub N N 210 
DT  P     OP2    sing N N 211 
DT  P     "O5'"  sing N N 212 
DT  OP2   HOP2   sing N N 213 
DT  "O5'" "C5'"  sing N N 214 
DT  "C5'" "C4'"  sing N N 215 
DT  "C5'" "H5'"  sing N N 216 
DT  "C5'" "H5''" sing N N 217 
DT  "C4'" "O4'"  sing N N 218 
DT  "C4'" "C3'"  sing N N 219 
DT  "C4'" "H4'"  sing N N 220 
DT  "O4'" "C1'"  sing N N 221 
DT  "C3'" "O3'"  sing N N 222 
DT  "C3'" "C2'"  sing N N 223 
DT  "C3'" "H3'"  sing N N 224 
DT  "O3'" "HO3'" sing N N 225 
DT  "C2'" "C1'"  sing N N 226 
DT  "C2'" "H2'"  sing N N 227 
DT  "C2'" "H2''" sing N N 228 
DT  "C1'" N1     sing N N 229 
DT  "C1'" "H1'"  sing N N 230 
DT  N1    C2     sing N N 231 
DT  N1    C6     sing N N 232 
DT  C2    O2     doub N N 233 
DT  C2    N3     sing N N 234 
DT  N3    C4     sing N N 235 
DT  N3    H3     sing N N 236 
DT  C4    O4     doub N N 237 
DT  C4    C5     sing N N 238 
DT  C5    C7     sing N N 239 
DT  C5    C6     doub N N 240 
DT  C7    H71    sing N N 241 
DT  C7    H72    sing N N 242 
DT  C7    H73    sing N N 243 
DT  C6    H6     sing N N 244 
HOH O     H1     sing N N 245 
HOH O     H2     sing N N 246 
# 
_ndb_struct_conf_na.entry_id   308D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 B DG 6 1_555 0.198  -0.178 -0.177 9.295   3.748   -0.855 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 
1 A DG 2 1_555 B DC 5 1_555 -0.118 -0.080 -0.277 -11.780 5.586   2.212  2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 
1 A DT 3 1_555 B DA 4 1_555 -0.283 -0.049 -0.180 3.030   -14.429 2.223  3 A_DT3:DA10_B A 3 ? B 10 ? 20 1 
1 A DA 4 1_555 B DT 3 1_555 0.348  -0.118 -0.029 -4.480  -4.662  4.861  4 A_DA4:DT9_B  A 4 ? B 9  ? 20 1 
1 A DC 5 1_555 B DG 2 1_555 0.028  -0.140 -0.276 10.657  9.688   1.078  5 A_DC5:DG8_B  A 5 ? B 8  ? 19 1 
1 A DG 6 1_555 B DC 1 1_555 -0.209 -0.130 -0.128 -7.979  2.307   -0.430 6 A_DG6:DC7_B  A 6 ? B 7  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 1.169  1.529  6.991 -1.116 -2.179 34.026 3.338  -2.367 6.842 -3.718  1.904  
34.112 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 
1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -1.328 0.311  3.030 -0.117 -3.188 31.034 1.137  2.449  2.989 -5.938  0.218  
31.194 2 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 
1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 0.376  0.155  3.613 -0.130 9.037  40.923 -0.832 -0.541 3.566 12.738  0.183  
41.867 3 AA_DT3DA4:DT9DA10_BB  A 3 ? B 10 ? A 4 ? B 9  ? 
1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 1.081  -0.077 3.126 0.208  -6.354 27.649 1.251  -2.161 3.074 -13.076 -0.428 
28.357 4 AA_DA4DC5:DG8DT9_BB   A 4 ? B 9  ? A 5 ? B 8  ? 
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -1.248 1.035  6.954 -0.280 -3.053 31.865 3.042  2.156  6.838 -5.545  0.509  
32.008 5 AA_DC5DG6:DC7DG8_BB   A 5 ? B 8  ? A 6 ? B 7  ? 
# 
_pdbx_initial_refinement_model.accession_code   1D11 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.details          DDF001 
# 
_atom_sites.entry_id                    308D 
_atom_sites.fract_transf_matrix[1][1]   0.053709 
_atom_sites.fract_transf_matrix[1][2]   0.017482 
_atom_sites.fract_transf_matrix[1][3]   -0.006625 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.052331 
_atom_sites.fract_transf_matrix[2][3]   -0.021042 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.040592 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_