HEADER VIRAL PROTEIN 19-APR-26 30BC TITLE STRUCTURE OF THE HEPATITIS C VIRUS E2 CORE FROM GENOTYPE 6A IN COMPLEX TITLE 2 WITH GERMLINE REVERTED VARIANTS OF THE BROADLY NEUTRALIZING ANTIBODY TITLE 3 AR3A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB AR3A 1-69 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HCV E2 ENVELOPE PROTEIN; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FAB AR3A 1-69 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RECOMBINANT HEPATITIS C VIRUS HK6A/JFH-1; SOURCE 8 ORGANISM_TAXID: 595609; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HEPATITIS C VIRUS, E2 ENVELOPE PROTEIN, NEUTRALIZING ANTIBODIES, GERM KEYWDS 2 LINE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.YECHEZKEL,N.TZARUM REVDAT 1 07-OCT-26 30BC 0 JRNL AUTH I.YECHEZKEL,H.MAYMON,A.TENNENHOUSE,F.CHEN,H.TARABIH,J.WEISZ, JRNL AUTH 2 R.FRAENKEL,S.J.FLEISHMAN,M.LAW,N.TZARUM JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF THE HEPATITIS C VIRUS JRNL TITL 2 ENVELOPE PROTEINS TO PROMOTE GERMLINE-TARGETING VACCINE JRNL TITL 3 DESIGN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 56082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9800 - 5.5400 0.93 2804 158 0.2122 0.2770 REMARK 3 2 5.5300 - 4.3900 0.96 2735 142 0.1837 0.2219 REMARK 3 3 4.3900 - 3.8400 0.97 2768 142 0.1994 0.2443 REMARK 3 4 3.8400 - 3.4900 0.98 2760 128 0.2230 0.2536 REMARK 3 5 3.4900 - 3.2400 0.97 2723 120 0.2413 0.2972 REMARK 3 6 3.2400 - 3.0500 0.99 2745 148 0.2604 0.3352 REMARK 3 7 3.0500 - 2.8900 0.99 2774 135 0.2683 0.2847 REMARK 3 8 2.8900 - 2.7700 0.99 2742 138 0.2629 0.3230 REMARK 3 9 2.7700 - 2.6600 0.99 2704 162 0.2604 0.2970 REMARK 3 10 2.6600 - 2.5700 0.99 2725 158 0.2744 0.2966 REMARK 3 11 2.5700 - 2.4900 0.98 2720 133 0.2869 0.3283 REMARK 3 12 2.4900 - 2.4200 0.99 2716 137 0.2886 0.3523 REMARK 3 13 2.4200 - 2.3600 0.99 2759 124 0.3002 0.3538 REMARK 3 14 2.3500 - 2.3000 1.00 2729 144 0.3059 0.3489 REMARK 3 15 2.3000 - 2.2500 0.99 2741 142 0.3097 0.3800 REMARK 3 16 2.2500 - 2.2000 0.99 2680 148 0.3299 0.3369 REMARK 3 17 2.2000 - 2.1500 0.98 2693 139 0.3432 0.3662 REMARK 3 18 2.1500 - 2.1100 0.93 2555 123 0.3439 0.3463 REMARK 3 19 2.1100 - 2.0800 0.82 2256 112 0.3412 0.3288 REMARK 3 20 2.0800 - 2.0400 0.74 2021 99 0.3512 0.3772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4819 REMARK 3 ANGLE : 1.308 6567 REMARK 3 CHIRALITY : 0.209 740 REMARK 3 PLANARITY : 0.012 843 REMARK 3 DIHEDRAL : 15.254 1730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 30BC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-26. REMARK 100 THE DEPOSITION ID IS D_1292156326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS4 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : EDNA REMARK 200 DATA SCALING SOFTWARE : EDNA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 46.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE AND 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.71400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.39650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.47600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 109.39650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.71400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.47600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, E, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 SER H 218 REMARK 465 GLN E 412 REMARK 465 LEU E 413 REMARK 465 ILE E 414 REMARK 465 ASN E 415 REMARK 465 THR E 416 REMARK 465 ASN E 417 REMARK 465 GLY E 418 REMARK 465 SER E 419 REMARK 465 TRP E 420 REMARK 465 PRO E 475 REMARK 465 GLU E 476 REMARK 465 ARG E 477 REMARK 465 MET E 478 REMARK 465 ALA E 479 REMARK 465 ALA E 480 REMARK 465 CYS E 481 REMARK 465 GLY E 482 REMARK 465 SER E 483 REMARK 465 SER E 484 REMARK 465 GLY E 485 REMARK 465 CYS E 486 REMARK 465 TRP E 487 REMARK 465 HIS E 488 REMARK 465 TYR E 489 REMARK 465 ALA E 490 REMARK 465 MET L -18 REMARK 465 GLU L -17 REMARK 465 TRP L -16 REMARK 465 SER L -15 REMARK 465 TRP L -14 REMARK 465 VAL L -13 REMARK 465 PHE L -12 REMARK 465 LEU L -11 REMARK 465 PHE L -10 REMARK 465 PHE L -9 REMARK 465 LEU L -8 REMARK 465 SER L -7 REMARK 465 VAL L -6 REMARK 465 THR L -5 REMARK 465 THR L -4 REMARK 465 GLY L -3 REMARK 465 VAL L -2 REMARK 465 HIS L -1 REMARK 465 SER L 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS E 452 SG CYS E 620 1.28 REMARK 500 O LEU L 34 O GLY L 51 1.50 REMARK 500 O HOH L 398 O HOH L 404 1.89 REMARK 500 O HOH L 383 O HOH L 403 1.90 REMARK 500 O HOH L 347 O HOH L 383 1.92 REMARK 500 NE2 GLN H 105 O HOH H 301 1.92 REMARK 500 N ALA L 185 O HOH L 301 1.94 REMARK 500 ND2 ASN E 430 O5 NAG E 702 1.95 REMARK 500 O HOH H 366 O HOH L 341 1.96 REMARK 500 O HOH L 302 O HOH L 394 1.98 REMARK 500 O HOH L 303 O HOH L 327 2.01 REMARK 500 O HOH L 360 O HOH L 382 2.02 REMARK 500 O HOH L 310 O HOH L 404 2.05 REMARK 500 O HOH H 348 O HOH H 371 2.05 REMARK 500 O PRO E 619 CG2 VAL E 622 2.10 REMARK 500 SG CYS E 452 CB CYS E 620 2.14 REMARK 500 O HOH H 341 O HOH H 349 2.14 REMARK 500 ND2 ASN E 623 O5 NAG E 703 2.15 REMARK 500 NH1 ARG L 46 O HOH L 302 2.15 REMARK 500 O GLN H 6 O HOH H 301 2.15 REMARK 500 O HOH L 363 O HOH L 366 2.15 REMARK 500 O GLY E 504 O HOH E 801 2.15 REMARK 500 ND2 ASN E 423 O5 NAG E 701 2.16 REMARK 500 NZ LYS H 12 O HOH H 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO L 81 N PRO L 81 CA 0.229 REMARK 500 PRO L 142 N PRO L 142 CA 0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 511 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO E 511 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO L 81 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO L 81 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO L 142 CA - N - CD ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 73 -64.07 72.69 REMARK 500 SER H 100B 133.48 178.00 REMARK 500 SER H 130 134.97 74.63 REMARK 500 ASP E 495 -110.07 -94.72 REMARK 500 PRO E 511 -101.81 43.79 REMARK 500 PRO E 605 -7.57 -55.15 REMARK 500 CYS E 620 4.00 -69.63 REMARK 500 ARG L 78 79.72 -151.52 REMARK 500 SER L 94 -179.03 -173.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 46 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO L 81 -16.85 REMARK 500 PRO L 81 -16.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 30BC H 1 218 PDB 30BC 30BC 1 218 DBREF 30BC E 412 645 PDB 30BC 30BC 412 645 DBREF 30BC L -18 215 PDB 30BC 30BC -18 215 SEQRES 1 H 232 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 232 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 232 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 232 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 232 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 232 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 232 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 232 ALA VAL TYR TYR CYS VAL ARG PRO GLU THR PRO ARG TYR SEQRES 9 H 232 CYS SER GLY GLY PHE CYS TYR GLY GLU PHE ASP ASN TRP SEQRES 10 H 232 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 232 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 232 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 232 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 232 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 232 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 232 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 232 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 232 ASP LYS LYS VAL GLU PRO LYS SER CYS GLY SER SEQRES 1 E 189 GLN LEU ILE ASN THR ASN GLY SER TRP HIS ILE ASN ARG SEQRES 2 E 189 THR ALA LEU ASN CYS ASN ASP SER LEU GLN THR GLY PHE SEQRES 3 E 189 ILE THR SER LEU PHE TYR ALA LYS ASN VAL ASP SER SER SEQRES 4 E 189 GLY CYS PRO GLU ARG MET ALA ALA CYS GLY SER SER GLY SEQRES 5 E 189 CYS TRP HIS TYR ALA PRO ARG PRO CYS ASP VAL VAL SER SEQRES 6 E 189 ALA ARG THR VAL CYS GLY PRO VAL TYR CYS PHE THR PRO SEQRES 7 E 189 SER PRO VAL VAL VAL GLY THR THR ASP LYS LEU GLY ILE SEQRES 8 E 189 PRO THR TYR ASN TRP GLY GLU ASN GLU THR ASP VAL PHE SEQRES 9 E 189 MET LEU GLU SER LEU ARG PRO PRO THR GLY GLY TRP PHE SEQRES 10 E 189 GLY CYS THR TRP MET ASN SER THR GLY PHE THR LYS THR SEQRES 11 E 189 CYS GLY ALA PRO PRO GLY GLY PRO THR ASP GLY GLY SER SEQRES 12 E 189 GLY PRO TRP ILE THR PRO ARG CYS LEU VAL ASP TYR PRO SEQRES 13 E 189 TYR ARG LEU TRP HIS TYR PRO CYS THR VAL ASN PHE THR SEQRES 14 E 189 LEU HIS LYS VAL ARG MET PHE VAL GLY GLY ILE GLU HIS SEQRES 15 E 189 ARG PHE ASP ALA ALA CYS ASN SEQRES 1 L 233 MET GLU TRP SER TRP VAL PHE LEU PHE PHE LEU SER VAL SEQRES 2 L 233 THR THR GLY VAL HIS SER GLU ILE VAL LEU THR GLN SER SEQRES 3 L 233 PRO GLY THR LEU SER LEU SER PRO GLY GLU ARG ALA THR SEQRES 4 L 233 LEU SER CYS ARG ALA SER GLN SER VAL SER SER SER TYR SEQRES 5 L 233 LEU ALA TRP TYR GLN GLN LYS PRO GLY GLN ALA PRO ARG SEQRES 6 L 233 LEU LEU ILE TYR GLY ALA SER SER ARG ALA THR GLY ILE SEQRES 7 L 233 PRO ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE SEQRES 8 L 233 THR LEU THR ILE SER ARG LEU GLU PRO GLU ASP PHE ALA SEQRES 9 L 233 VAL TYR TYR CYS GLN GLN TYR GLY SER SER PRO THR PHE SEQRES 10 L 233 GLY GLN GLY THR ARG VAL ASP ILE LYS ARG THR VAL ALA SEQRES 11 L 233 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 12 L 233 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 13 L 233 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 14 L 233 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 15 L 233 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 16 L 233 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 17 L 233 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 18 L 233 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 1 14 HET NAG A 2 14 HET NAG E 701 14 HET NAG E 702 14 HET NAG E 703 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 8 HOH *196(H2 O) HELIX 1 AA1 GLN H 61 GLN H 64 5 4 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 ILE E 438 PHE E 442 5 5 HELIX 7 AA7 ARG E 500 VAL E 502 5 3 HELIX 8 AA8 GLU E 540 ARG E 543 5 4 HELIX 9 AA9 TYR E 613 TYR E 618 1 6 HELIX 10 AB1 PRO E 619 VAL E 622 5 4 HELIX 11 AB2 SER L 30 SER L 32 5 3 HELIX 12 AB3 GLU L 80 PHE L 84 5 5 HELIX 13 AB4 SER L 122 SER L 128 1 7 HELIX 14 AB5 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 4 LEU H 4 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ALA H 71 -1 N THR H 68 O GLU H 81 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 VAL H 93 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 56 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 AA3 3 PHE H 100E TYR H 100G 0 SHEET 2 AA3 3 TYR H 100 SER H 100B-1 N TYR H 100 O TYR H 100G SHEET 3 AA3 3 CYS E 429 ASN E 430 -1 O CYS E 429 N CYS H 100A SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 2 VAL E 496 SER E 498 0 SHEET 2 AA7 2 VAL E 536 MET E 538 -1 O PHE E 537 N VAL E 497 SHEET 1 AA8 4 PRO E 513 VAL E 516 0 SHEET 2 AA8 4 VAL E 506 PHE E 509 -1 N CYS E 508 O VAL E 514 SHEET 3 AA8 4 CYS E 552 MET E 555 -1 O THR E 553 N TYR E 507 SHEET 4 AA8 4 THR E 561 CYS E 564 -1 O LYS E 562 N TRP E 554 SHEET 1 AA9 4 TRP E 602 THR E 604 0 SHEET 2 AA9 4 CYS E 607 VAL E 609 -1 O CYS E 607 N THR E 604 SHEET 3 AA9 4 ILE E 636 CYS E 644 -1 O ALA E 643 N LEU E 608 SHEET 4 AA9 4 THR E 625 VAL E 633 -1 N MET E 631 O HIS E 638 SHEET 1 AB1 3 LEU L 4 SER L 7 0 SHEET 2 AB1 3 ALA L 19 VAL L 29 -1 O SER L 22 N SER L 7 SHEET 3 AB1 3 PHE L 63 ILE L 76 -1 O ILE L 76 N ALA L 19 SHEET 1 AB2 6 THR L 10 LEU L 13 0 SHEET 2 AB2 6 THR L 103 ILE L 107 1 O ARG L 104 N LEU L 11 SHEET 3 AB2 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB2 6 LEU L 34 GLN L 39 -1 N ALA L 35 O GLN L 90 SHEET 5 AB2 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AB2 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AB3 4 THR L 10 LEU L 13 0 SHEET 2 AB3 4 THR L 103 ILE L 107 1 O ARG L 104 N LEU L 11 SHEET 3 AB3 4 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AB3 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB4 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AB4 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB5 4 ALA L 154 LEU L 155 0 SHEET 2 AB5 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB5 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 100A CYS H 100F 1555 1555 2.02 SSBOND 3 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 4 CYS E 429 CYS E 503 1555 1555 2.05 SSBOND 5 CYS E 494 CYS E 564 1555 1555 2.05 SSBOND 6 CYS E 508 CYS E 552 1555 1555 2.03 SSBOND 7 CYS E 607 CYS E 644 1555 1555 2.04 SSBOND 8 CYS L 23 CYS L 89 1555 1555 2.07 SSBOND 9 CYS L 135 CYS L 195 1555 1555 2.02 LINK ND2 ASN E 423 C1 NAG E 701 1555 1555 1.41 LINK ND2 ASN E 430 C1 NAG E 702 1555 1555 1.44 LINK ND2 ASN E 556 C1 NAG A 1 1555 1555 1.47 LINK ND2 ASN E 623 C1 NAG E 703 1555 1555 1.46 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -8.49 CISPEP 2 GLU H 148 PRO H 149 0 7.84 CISPEP 3 SER L 7 PRO L 8 0 -9.79 CISPEP 4 TYR L 141 PRO L 142 0 4.17 CRYST1 61.428 66.952 218.793 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004571 0.00000 CONECT 156 720 CONECT 720 156 CONECT 797 828 CONECT 828 797 CONECT 1131 1545 CONECT 1545 1131 CONECT 1716 4659 CONECT 1761 2028 CONECT 1769 4673 CONECT 1964 2497 CONECT 2028 1761 CONECT 2064 2403 CONECT 2403 2064 CONECT 2440 4631 CONECT 2497 1964 CONECT 2628 2942 CONECT 2772 4687 CONECT 2942 2628 CONECT 3114 3643 CONECT 3643 3114 CONECT 3988 4478 CONECT 4478 3988 CONECT 4631 2440 4632 4642 CONECT 4632 4631 4633 4639 CONECT 4633 4632 4634 4640 CONECT 4634 4633 4635 4641 CONECT 4635 4634 4636 4642 CONECT 4636 4635 4643 CONECT 4637 4638 4639 4644 CONECT 4638 4637 CONECT 4639 4632 4637 CONECT 4640 4633 CONECT 4641 4634 4645 CONECT 4642 4631 4635 CONECT 4643 4636 CONECT 4644 4637 CONECT 4645 4641 4646 4656 CONECT 4646 4645 4647 4653 CONECT 4647 4646 4648 4654 CONECT 4648 4647 4649 4655 CONECT 4649 4648 4650 4656 CONECT 4650 4649 4657 CONECT 4651 4652 4653 4658 CONECT 4652 4651 CONECT 4653 4646 4651 CONECT 4654 4647 CONECT 4655 4648 CONECT 4656 4645 4649 CONECT 4657 4650 CONECT 4658 4651 CONECT 4659 1716 4660 4670 CONECT 4660 4659 4661 4667 CONECT 4661 4660 4662 4668 CONECT 4662 4661 4663 4669 CONECT 4663 4662 4664 4670 CONECT 4664 4663 4671 CONECT 4665 4666 4667 4672 CONECT 4666 4665 CONECT 4667 4660 4665 CONECT 4668 4661 CONECT 4669 4662 CONECT 4670 4659 4663 CONECT 4671 4664 CONECT 4672 4665 CONECT 4673 1769 4674 4684 CONECT 4674 4673 4675 4681 CONECT 4675 4674 4676 4682 CONECT 4676 4675 4677 4683 CONECT 4677 4676 4678 4684 CONECT 4678 4677 4685 CONECT 4679 4680 4681 4686 CONECT 4680 4679 CONECT 4681 4674 4679 CONECT 4682 4675 CONECT 4683 4676 CONECT 4684 4673 4677 CONECT 4685 4678 CONECT 4686 4679 CONECT 4687 2772 4688 4698 CONECT 4688 4687 4689 4695 CONECT 4689 4688 4690 4696 CONECT 4690 4689 4691 4697 CONECT 4691 4690 4692 4698 CONECT 4692 4691 4699 CONECT 4693 4694 4695 4700 CONECT 4694 4693 CONECT 4695 4688 4693 CONECT 4696 4689 CONECT 4697 4690 CONECT 4698 4687 4691 CONECT 4699 4692 CONECT 4700 4693 MASTER 394 0 5 14 55 0 0 6 4851 3 92 51 END