HEADER HYDROLASE 07-MAY-26 30PL TITLE PUTATIVE POLYURETHANE DEGRADING AMIDASE BOUND TO FRAGMENT VT00136 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDASE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SPERMIDINIFACIENS; SOURCE 3 ORGANISM_TAXID: 1141889; SOURCE 4 GENE: COC42_04005; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BICER,D.E.OTZEN,J.P.MORTH,S.S.THIRUP REVDAT 2 11-NOV-26 30PL 1 JRNL REVDAT 1 04-NOV-26 30PL 0 JRNL AUTH D.BICER,D.KOCHUBEI,R.GRAHAM,S.PENA-DIAZ,L.ROTILIO, JRNL AUTH 2 N.L.VILLADSEN,A.SOMMERFELDT,M.B.JOHANSEN,A.SANDAHL, JRNL AUTH 3 S.S.THIRUP,J.P.MORTH,D.E.OTZEN JRNL TITL FRAGMENT-BASED ACTIVE-SITE EXPLORATION OF URETHANE JRNL TITL 2 HYDROLASES REVEALS A DIVERSITY OF URETHANE BINDING MODES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 82 1298 2026 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 42929454 JRNL DOI 10.1107/S2059798326010624 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 209277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7300 - 4.9600 0.99 7256 381 0.3051 0.3060 REMARK 3 2 4.9600 - 3.9400 1.00 6898 365 0.2731 0.2902 REMARK 3 3 3.9400 - 3.4400 1.00 6815 359 0.2804 0.2870 REMARK 3 4 3.4400 - 3.1300 1.00 6753 356 0.2868 0.2964 REMARK 3 5 3.1300 - 2.9000 1.00 6726 353 0.2861 0.3069 REMARK 3 6 2.9000 - 2.7300 1.00 6716 353 0.2895 0.3018 REMARK 3 7 2.7300 - 2.6000 1.00 6646 350 0.2803 0.2973 REMARK 3 8 2.6000 - 2.4800 1.00 6662 351 0.2777 0.2969 REMARK 3 9 2.4800 - 2.3900 1.00 6655 351 0.2734 0.2963 REMARK 3 10 2.3900 - 2.3100 1.00 6602 348 0.2707 0.2934 REMARK 3 11 2.3100 - 2.2300 1.00 6608 348 0.2701 0.3043 REMARK 3 12 2.2300 - 2.1700 1.00 6634 349 0.2639 0.3055 REMARK 3 13 2.1700 - 2.1100 1.00 6594 346 0.2651 0.2932 REMARK 3 14 2.1100 - 2.0600 1.00 6555 346 0.2713 0.2926 REMARK 3 15 2.0600 - 2.0100 1.00 6605 347 0.2619 0.3006 REMARK 3 16 2.0100 - 1.9700 1.00 6598 348 0.2602 0.2947 REMARK 3 17 1.9700 - 1.9300 1.00 6558 345 0.2690 0.3052 REMARK 3 18 1.9300 - 1.9000 1.00 6586 347 0.2721 0.3172 REMARK 3 19 1.9000 - 1.8600 1.00 6537 344 0.2717 0.3084 REMARK 3 20 1.8600 - 1.8300 1.00 6568 346 0.2591 0.2840 REMARK 3 21 1.8300 - 1.8000 1.00 6553 345 0.2629 0.2879 REMARK 3 22 1.8000 - 1.7700 1.00 6546 345 0.2617 0.2894 REMARK 3 23 1.7700 - 1.7500 1.00 6545 344 0.2575 0.2719 REMARK 3 24 1.7500 - 1.7200 1.00 6552 345 0.2658 0.3007 REMARK 3 25 1.7200 - 1.7000 1.00 6561 345 0.2628 0.3047 REMARK 3 26 1.7000 - 1.6800 1.00 6519 343 0.2693 0.2965 REMARK 3 27 1.6800 - 1.6600 1.00 6521 344 0.2741 0.3244 REMARK 3 28 1.6600 - 1.6400 1.00 6507 342 0.2809 0.3318 REMARK 3 29 1.6400 - 1.6200 1.00 6543 345 0.2934 0.3215 REMARK 3 30 1.6200 - 1.6000 0.97 6391 336 0.3109 0.3158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6420 REMARK 3 ANGLE : 0.917 8776 REMARK 3 CHIRALITY : 0.054 1008 REMARK 3 PLANARITY : 0.010 1160 REMARK 3 DIHEDRAL : 11.942 2274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 30PL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1292156940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7293 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 209563 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3,350; 0.2 M MAGNESIUM REMARK 280 ACETATE TETRAHYDRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.23333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 290.46667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 217.85000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 363.08333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.61667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.23333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 290.46667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 363.08333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 217.85000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 836 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 59 REMARK 465 VAL A 60 REMARK 465 ALA A 61 REMARK 465 ASP A 62 REMARK 465 ALA A 63 REMARK 465 GLN A 430 REMARK 465 GLY A 431 REMARK 465 ALA A 432 REMARK 465 ALA A 433 REMARK 465 MET C 1 REMARK 465 PRO C 59 REMARK 465 VAL C 60 REMARK 465 ALA C 61 REMARK 465 ASP C 62 REMARK 465 ALA C 63 REMARK 465 GLN C 430 REMARK 465 GLY C 431 REMARK 465 ALA C 432 REMARK 465 ALA C 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG C 502 O HOH C 622 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 MG MG A 502 MG MG C 502 8665 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 57 -164.83 -120.37 REMARK 500 ASP A 141 104.71 -165.56 REMARK 500 SER A 150 42.87 -88.69 REMARK 500 ASP A 204 97.70 -162.52 REMARK 500 LEU A 210 -45.98 72.43 REMARK 500 ARG A 414 36.12 -97.93 REMARK 500 LEU C 67 108.42 -43.24 REMARK 500 ASP C 141 100.74 -165.24 REMARK 500 SER C 150 45.19 -89.90 REMARK 500 ASP C 204 98.50 -163.11 REMARK 500 LEU C 210 -49.56 75.20 REMARK 500 ARG C 414 36.42 -98.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 198 ARG A 199 -146.72 REMARK 500 HIS C 198 ARG C 199 -149.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 993 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH C 980 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH C 981 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH C 982 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH C 983 DISTANCE = 7.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 612 O REMARK 620 2 HOH A 614 O 85.3 REMARK 620 3 HOH A 645 O 85.5 81.2 REMARK 620 4 HOH C 622 O 114.8 80.2 151.0 REMARK 620 5 HOH C 624 O 162.0 95.8 77.0 83.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 612 O REMARK 620 2 HOH A 614 O 65.4 REMARK 620 3 HOH C 624 O 94.9 62.0 REMARK 620 N 1 2 DBREF1 30PL A 1 433 UNP A0A2A4B7C5_9SPHN DBREF2 30PL A A0A2A4B7C5 1 433 DBREF1 30PL C 1 433 UNP A0A2A4B7C5_9SPHN DBREF2 30PL C A0A2A4B7C5 1 433 SEQRES 1 A 433 MET ARG SER ALA LEU ALA THR ALA ALA ALA ILE ARG ALA SEQRES 2 A 433 GLY GLU THR SER ALA ARG ALA GLU THR ASP THR ALA ILE SEQRES 3 A 433 ALA ARG ILE GLU ALA GLY ASP ALA ALA ILE ASN ALA VAL SEQRES 4 A 433 VAL VAL ARG ASP PHE ASP ARG ALA ARG ALA ALA ALA ASP SEQRES 5 A 433 ALA ILE ASP ALA ARG GLY PRO VAL ALA ASP ALA MET PRO SEQRES 6 A 433 LEU LEU GLY VAL PRO MET THR VAL LYS GLU ALA PHE ASP SEQRES 7 A 433 ILE GLU GLY LEU PRO THR HIS TRP GLY LEU ALA GLN HIS SEQRES 8 A 433 ALA GLY ASN ILE ALA THR SER ASP ALA GLU ALA VAL ARG SEQRES 9 A 433 ARG LEU LYS ALA ALA GLY ALA ILE ILE LEU GLY LYS THR SEQRES 10 A 433 ASN LEU PRO LYS ALA LEU GLY ASP TRP GLN SER VAL ASN SEQRES 11 A 433 SER ILE HIS GLY ARG THR ASN HIS PRO LEU ASP PRO THR SEQRES 12 A 433 ARG THR PRO GLY GLY SER SER GLY GLY SER ALA ALA ALA SEQRES 13 A 433 LEU ALA ALA GLY TYR VAL PRO ILE GLU MET GLY SER ASP SEQRES 14 A 433 ILE GLY GLY SER ILE ARG VAL PRO ALA HIS PHE CYS GLY SEQRES 15 A 433 VAL TRP GLY LEU LYS PRO THR TRP ASN ALA ILE SER SER SEQRES 16 A 433 LEU GLY HIS ARG TYR PRO LYS THR ASP GLY ALA GLU THR SEQRES 17 A 433 VAL LEU GLY ALA VAL GLY PRO MET ALA ARG THR GLY GLU SEQRES 18 A 433 ASP LEU ALA VAL LEU LEU ASP LEU LEU SER ALA LEU PRO SEQRES 19 A 433 LEU PRO PRO PRO ARG PRO ALA LYS ARG VAL LEU ALA LEU SEQRES 20 A 433 THR GLN HIS PRO GLU THR ARG THR ALA ALA ALA CYS VAL SEQRES 21 A 433 GLU ALA VAL GLU HIS ALA ALA GLU ALA LEU VAL ARG ALA SEQRES 22 A 433 GLY VAL GLU VAL ILE ARG ASP HIS ALA ALA LEU PRO ASP SEQRES 23 A 433 LEU SER ARG GLN HIS GLU ALA TYR GLY LYS MET LEU ASN SEQRES 24 A 433 VAL VAL PHE ALA ARG SER GLN PRO ASP LEU HIS HIS THR SEQRES 25 A 433 MET PRO THR LEU LEU ALA TRP LEU ASN TRP LEU ASP ALA SEQRES 26 A 433 GLN ALA ARG SER THR ARG ALA TRP GLY ALA LEU PHE GLU SEQRES 27 A 433 GLU VAL ASP ALA VAL ILE ALA PRO PRO ALA ALA THR LEU SEQRES 28 A 433 ALA PHE ARG HIS ASP SER ARG PRO LEU ALA GLU ARG THR SEQRES 29 A 433 LEU ASP ILE ASP GLY VAL ASP SER PRO TYR ASP ALA HIS SEQRES 30 A 433 LEU ALA TRP ALA GLY LEU ALA THR TYR PRO GLY LEU PRO SEQRES 31 A 433 ALA CYS VAL VAL PRO ILE GLY THR PHE ASP GLY LEU PRO SEQRES 32 A 433 GLY GLY VAL GLN VAL MET CYS ALA GLN HIS ARG ASP HIS SEQRES 33 A 433 ASP ALA ILE ALA ILE ALA GLN ILE ILE ASP THR GLN LEU SEQRES 34 A 433 GLN GLY ALA ALA SEQRES 1 C 433 MET ARG SER ALA LEU ALA THR ALA ALA ALA ILE ARG ALA SEQRES 2 C 433 GLY GLU THR SER ALA ARG ALA GLU THR ASP THR ALA ILE SEQRES 3 C 433 ALA ARG ILE GLU ALA GLY ASP ALA ALA ILE ASN ALA VAL SEQRES 4 C 433 VAL VAL ARG ASP PHE ASP ARG ALA ARG ALA ALA ALA ASP SEQRES 5 C 433 ALA ILE ASP ALA ARG GLY PRO VAL ALA ASP ALA MET PRO SEQRES 6 C 433 LEU LEU GLY VAL PRO MET THR VAL LYS GLU ALA PHE ASP SEQRES 7 C 433 ILE GLU GLY LEU PRO THR HIS TRP GLY LEU ALA GLN HIS SEQRES 8 C 433 ALA GLY ASN ILE ALA THR SER ASP ALA GLU ALA VAL ARG SEQRES 9 C 433 ARG LEU LYS ALA ALA GLY ALA ILE ILE LEU GLY LYS THR SEQRES 10 C 433 ASN LEU PRO LYS ALA LEU GLY ASP TRP GLN SER VAL ASN SEQRES 11 C 433 SER ILE HIS GLY ARG THR ASN HIS PRO LEU ASP PRO THR SEQRES 12 C 433 ARG THR PRO GLY GLY SER SER GLY GLY SER ALA ALA ALA SEQRES 13 C 433 LEU ALA ALA GLY TYR VAL PRO ILE GLU MET GLY SER ASP SEQRES 14 C 433 ILE GLY GLY SER ILE ARG VAL PRO ALA HIS PHE CYS GLY SEQRES 15 C 433 VAL TRP GLY LEU LYS PRO THR TRP ASN ALA ILE SER SER SEQRES 16 C 433 LEU GLY HIS ARG TYR PRO LYS THR ASP GLY ALA GLU THR SEQRES 17 C 433 VAL LEU GLY ALA VAL GLY PRO MET ALA ARG THR GLY GLU SEQRES 18 C 433 ASP LEU ALA VAL LEU LEU ASP LEU LEU SER ALA LEU PRO SEQRES 19 C 433 LEU PRO PRO PRO ARG PRO ALA LYS ARG VAL LEU ALA LEU SEQRES 20 C 433 THR GLN HIS PRO GLU THR ARG THR ALA ALA ALA CYS VAL SEQRES 21 C 433 GLU ALA VAL GLU HIS ALA ALA GLU ALA LEU VAL ARG ALA SEQRES 22 C 433 GLY VAL GLU VAL ILE ARG ASP HIS ALA ALA LEU PRO ASP SEQRES 23 C 433 LEU SER ARG GLN HIS GLU ALA TYR GLY LYS MET LEU ASN SEQRES 24 C 433 VAL VAL PHE ALA ARG SER GLN PRO ASP LEU HIS HIS THR SEQRES 25 C 433 MET PRO THR LEU LEU ALA TRP LEU ASN TRP LEU ASP ALA SEQRES 26 C 433 GLN ALA ARG SER THR ARG ALA TRP GLY ALA LEU PHE GLU SEQRES 27 C 433 GLU VAL ASP ALA VAL ILE ALA PRO PRO ALA ALA THR LEU SEQRES 28 C 433 ALA PHE ARG HIS ASP SER ARG PRO LEU ALA GLU ARG THR SEQRES 29 C 433 LEU ASP ILE ASP GLY VAL ASP SER PRO TYR ASP ALA HIS SEQRES 30 C 433 LEU ALA TRP ALA GLY LEU ALA THR TYR PRO GLY LEU PRO SEQRES 31 C 433 ALA CYS VAL VAL PRO ILE GLY THR PHE ASP GLY LEU PRO SEQRES 32 C 433 GLY GLY VAL GLN VAL MET CYS ALA GLN HIS ARG ASP HIS SEQRES 33 C 433 ASP ALA ILE ALA ILE ALA GLN ILE ILE ASP THR GLN LEU SEQRES 34 C 433 GLN GLY ALA ALA HET M0W A 501 21 HET MG A 502 1 HET M0W C 501 21 HET MG C 502 1 HETNAM M0W ~{N}-METHYLQUINAZOLIN-4-AMINE HETNAM MG MAGNESIUM ION FORMUL 3 M0W 2(C9 H9 N3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *780(H2 O) HELIX 1 AA1 SER A 3 ALA A 13 1 11 HELIX 2 AA2 SER A 17 ASN A 37 1 21 HELIX 3 AA3 ASP A 43 ALA A 56 1 14 HELIX 4 AA4 LEU A 88 ALA A 92 5 5 HELIX 5 AA5 ALA A 100 ALA A 109 1 10 HELIX 6 AA6 PRO A 120 GLY A 124 5 5 HELIX 7 AA7 SER A 150 ALA A 159 1 10 HELIX 8 AA8 ILE A 174 GLY A 182 1 9 HELIX 9 AA9 THR A 219 SER A 231 1 13 HELIX 10 AB1 ALA A 256 ALA A 273 1 18 HELIX 11 AB2 ASP A 286 ARG A 304 1 19 HELIX 12 AB3 SER A 305 MET A 313 5 9 HELIX 13 AB4 THR A 315 PHE A 337 1 23 HELIX 14 AB5 PRO A 359 GLU A 362 5 4 HELIX 15 AB6 HIS A 377 TYR A 386 1 10 HELIX 16 AB7 ARG A 414 LEU A 429 1 16 HELIX 17 AB8 SER C 3 ALA C 13 1 11 HELIX 18 AB9 SER C 17 ASN C 37 1 21 HELIX 19 AC1 ASP C 43 ALA C 56 1 14 HELIX 20 AC2 LEU C 88 ALA C 92 5 5 HELIX 21 AC3 ALA C 100 ALA C 109 1 10 HELIX 22 AC4 PRO C 120 GLY C 124 5 5 HELIX 23 AC5 SER C 150 ALA C 159 1 10 HELIX 24 AC6 ILE C 174 GLY C 182 1 9 HELIX 25 AC7 THR C 219 SER C 231 1 13 HELIX 26 AC8 ALA C 256 ALA C 273 1 18 HELIX 27 AC9 ASP C 286 ARG C 304 1 19 HELIX 28 AD1 SER C 305 MET C 313 5 9 HELIX 29 AD2 THR C 315 PHE C 337 1 23 HELIX 30 AD3 PRO C 359 GLU C 362 5 4 HELIX 31 AD4 ALA C 376 TYR C 386 1 11 HELIX 32 AD5 ARG C 414 LEU C 429 1 16 SHEET 1 AA1 3 VAL A 39 ARG A 42 0 SHEET 2 AA1 3 ILE A 112 THR A 117 -1 O LYS A 116 N VAL A 41 SHEET 3 AA1 3 PRO A 70 LYS A 74 1 N MET A 71 O LEU A 114 SHEET 1 AA2 2 VAL A 129 ASN A 130 0 SHEET 2 AA2 2 GLY A 134 ARG A 135 -1 O GLY A 134 N ASN A 130 SHEET 1 AA3 8 ILE A 164 ASP A 169 0 SHEET 2 AA3 8 ALA A 212 ALA A 217 -1 O GLY A 214 N GLY A 167 SHEET 3 AA3 8 TRP A 184 LYS A 187 -1 N TRP A 184 O ALA A 217 SHEET 4 AA3 8 ALA A 391 PHE A 399 -1 O VAL A 393 N GLY A 185 SHEET 5 AA3 8 LEU A 402 MET A 409 -1 O VAL A 408 N CYS A 392 SHEET 6 AA3 8 ALA A 342 ALA A 345 -1 N VAL A 343 O MET A 409 SHEET 7 AA3 8 ARG A 243 ALA A 246 1 N LEU A 245 O ALA A 342 SHEET 8 AA3 8 GLU A 276 ILE A 278 1 O GLU A 276 N VAL A 244 SHEET 1 AA4 2 THR A 364 ILE A 367 0 SHEET 2 AA4 2 VAL A 370 PRO A 373 -1 O SER A 372 N LEU A 365 SHEET 1 AA5 3 VAL C 39 ARG C 42 0 SHEET 2 AA5 3 ILE C 112 THR C 117 -1 O LYS C 116 N VAL C 41 SHEET 3 AA5 3 PRO C 70 LYS C 74 1 N MET C 71 O LEU C 114 SHEET 1 AA6 2 VAL C 129 ASN C 130 0 SHEET 2 AA6 2 GLY C 134 ARG C 135 -1 O GLY C 134 N ASN C 130 SHEET 1 AA7 8 ILE C 164 ASP C 169 0 SHEET 2 AA7 8 ALA C 212 ALA C 217 -1 O GLY C 214 N GLY C 167 SHEET 3 AA7 8 TRP C 184 LYS C 187 -1 N TRP C 184 O ALA C 217 SHEET 4 AA7 8 ALA C 391 PHE C 399 -1 O ALA C 391 N LYS C 187 SHEET 5 AA7 8 LEU C 402 MET C 409 -1 O LEU C 402 N PHE C 399 SHEET 6 AA7 8 ALA C 342 ALA C 345 -1 N VAL C 343 O MET C 409 SHEET 7 AA7 8 ARG C 243 ALA C 246 1 N LEU C 245 O ILE C 344 SHEET 8 AA7 8 GLU C 276 ILE C 278 1 O ILE C 278 N ALA C 246 SHEET 1 AA8 2 THR C 364 ILE C 367 0 SHEET 2 AA8 2 VAL C 370 PRO C 373 -1 O SER C 372 N LEU C 365 LINK MG MG A 502 O HOH A 612 1555 1555 2.35 LINK MG MG A 502 O HOH A 614 1555 1555 2.01 LINK MG MG A 502 O HOH A 645 1555 1555 2.92 LINK MG MG A 502 O HOH C 622 1555 8665 2.74 LINK MG MG A 502 O HOH C 624 1555 8665 1.92 LINK O HOH A 612 MG MG C 502 8565 1555 2.78 LINK O HOH A 614 MG MG C 502 8565 1555 2.71 LINK MG MG C 502 O HOH C 624 1555 1555 2.94 CISPEP 1 GLY A 148 SER A 149 0 1.07 CISPEP 2 GLY C 148 SER C 149 0 4.32 CRYST1 111.100 111.100 435.700 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009001 0.005197 0.000000 0.00000 SCALE2 0.000000 0.010393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002295 0.00000 CONECT 6255 6261 6262 6267 CONECT 6256 6264 6268 6269 6270 CONECT 6257 6263 6264 6265 CONECT 6258 6265 6266 6271 CONECT 6259 6260 6263 6266 CONECT 6260 6259 6261 6272 CONECT 6261 6255 6260 6273 CONECT 6262 6255 6263 6274 CONECT 6263 6257 6259 6262 CONECT 6264 6256 6257 6275 CONECT 6265 6257 6258 CONECT 6266 6258 6259 CONECT 6267 6255 CONECT 6268 6256 CONECT 6269 6256 CONECT 6270 6256 CONECT 6271 6258 CONECT 6272 6260 CONECT 6273 6261 CONECT 6274 6262 CONECT 6275 6264 CONECT 6276 6310 6312 6343 CONECT 6277 6283 6284 6289 CONECT 6278 6286 6290 6291 6292 CONECT 6279 6285 6286 6287 CONECT 6280 6287 6288 6293 CONECT 6281 6282 6285 6288 CONECT 6282 6281 6283 6294 CONECT 6283 6277 6282 6295 CONECT 6284 6277 6285 6296 CONECT 6285 6279 6281 6284 CONECT 6286 6278 6279 6297 CONECT 6287 6279 6280 CONECT 6288 6280 6281 CONECT 6289 6277 CONECT 6290 6278 CONECT 6291 6278 CONECT 6292 6278 CONECT 6293 6280 CONECT 6294 6282 CONECT 6295 6283 CONECT 6296 6284 CONECT 6297 6286 CONECT 6298 6719 CONECT 6310 6276 CONECT 6312 6276 CONECT 6343 6276 CONECT 6719 6298 MASTER 415 0 4 32 30 0 0 6 7058 2 48 68 END