HEADER HYDROLASE 09-JUL-26 32HB TITLE PARP9 MACRO DOMAIN 2 P347G MUTANT, FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 9,ARTD9,B COMPND 5 AGGRESSIVE LYMPHOMA PROTEIN,POLY [ADP-RIBOSE] POLYMERASE 9,PARP-9; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP9, BAL, BAL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PARP9, ADPR, MACRO DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHIKUNOVA,K.N.FOURKIOTIS,A.G.SPYROULIAS,A.PERRAKIS REVDAT 1 26-AUG-26 32HB 0 JRNL AUTH K.N.FOURKIOTIS,C.SIDERAS-BISDEKIS,C.A.TSIKA,A.FISH, JRNL AUTH 2 P.K.KRAVVARITI,S.A.TSATSOULI,A.PERRAKIS,A.CHIKUNOVA, JRNL AUTH 3 A.G.SPYROULIAS JRNL TITL SO DIFFERENT, YET SO SIMILAR: THE PARADIGM OF PARP9 MACRO JRNL TITL 2 DOMAIN PARALOGS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : -2.26000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2987 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2928 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.752 ; 1.816 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6767 ; 0.556 ; 1.754 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 2 ;14.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;14.627 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3312 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 2.390 ; 2.807 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1461 ; 2.388 ; 2.806 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1821 ; 3.444 ; 5.018 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1822 ; 3.443 ; 5.018 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1526 ; 4.013 ; 3.391 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1524 ; 3.991 ; 3.389 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2214 ; 5.923 ; 5.981 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3158 ; 7.355 ;27.300 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3159 ; 7.354 ;27.310 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 494 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9457 -0.4723 15.5022 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.0172 REMARK 3 T33: 0.0261 T12: 0.0263 REMARK 3 T13: 0.0001 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.4117 L22: 3.1974 REMARK 3 L33: 2.6906 L12: -0.0858 REMARK 3 L13: -0.4638 L23: -0.8832 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0922 S13: -0.2077 REMARK 3 S21: -0.0239 S22: -0.0719 S23: -0.1542 REMARK 3 S31: 0.2634 S32: 0.1628 S33: 0.0723 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 309 B 497 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3583 25.0367 5.1530 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0157 REMARK 3 T33: 0.0251 T12: -0.0109 REMARK 3 T13: -0.0000 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.9139 L22: 4.0130 REMARK 3 L33: 2.5526 L12: -0.9369 REMARK 3 L13: 0.2687 L23: -0.8723 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1614 S13: 0.2228 REMARK 3 S21: -0.0257 S22: -0.0653 S23: -0.2431 REMARK 3 S31: -0.1258 S32: 0.1152 S33: 0.0628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 32HB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1292158796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9655 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 73.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NPS, 0.1 M IMIDAZOLE/MES BUFFER, REMARK 280 12.5% V/V MPD; 12.5% PEG 1000; 12.5% W/V PEG 3350, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.95850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 301 REMARK 465 ALA A 302 REMARK 465 MET A 303 REMARK 465 ALA A 304 REMARK 465 THR A 305 REMARK 465 THR A 306 REMARK 465 PRO A 307 REMARK 465 SER A 308 REMARK 465 PHE A 309 REMARK 465 LYS A 370 REMARK 465 GLN A 371 REMARK 465 PHE A 372 REMARK 465 GLN A 373 REMARK 465 ARG A 374 REMARK 465 TYR A 495 REMARK 465 SER A 496 REMARK 465 VAL A 497 REMARK 465 GLY B 301 REMARK 465 ALA B 302 REMARK 465 MET B 303 REMARK 465 ALA B 304 REMARK 465 THR B 305 REMARK 465 THR B 306 REMARK 465 PRO B 307 REMARK 465 SER B 308 REMARK 465 GLN B 371 REMARK 465 PHE B 372 REMARK 465 GLN B 373 REMARK 465 ARG B 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 360 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 315 -118.43 54.29 REMARK 500 ASP A 342 101.63 -166.03 REMARK 500 PHE A 384 -129.03 56.13 REMARK 500 ASN B 310 -4.12 -146.71 REMARK 500 ASN B 315 -116.56 51.94 REMARK 500 ASP B 342 103.63 -164.24 REMARK 500 PHE B 384 -125.28 54.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 491 LEU B 492 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 486 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 32HB A 305 497 UNP Q8IXQ6 PARP9_HUMAN 305 497 DBREF 32HB B 305 497 UNP Q8IXQ6 PARP9_HUMAN 305 497 SEQADV 32HB GLY A 301 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB ALA A 302 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB MET A 303 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB ALA A 304 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB GLY A 347 UNP Q8IXQ6 PRO 347 ENGINEERED MUTATION SEQADV 32HB GLY B 301 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB ALA B 302 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB MET B 303 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB ALA B 304 UNP Q8IXQ6 EXPRESSION TAG SEQADV 32HB GLY B 347 UNP Q8IXQ6 PRO 347 ENGINEERED MUTATION SEQRES 1 A 197 GLY ALA MET ALA THR THR PRO SER PHE ASN ALA MET VAL SEQRES 2 A 197 VAL ASN ASN LEU THR LEU GLN ILE VAL GLN GLY HIS ILE SEQRES 3 A 197 GLU TRP GLN THR ALA ASP VAL ILE VAL ASN SER VAL ASN SEQRES 4 A 197 PRO HIS ASP ILE THR VAL GLY GLY VAL ALA LYS SER ILE SEQRES 5 A 197 LEU GLN GLN ALA GLY VAL GLU MET LYS SER GLU PHE LEU SEQRES 6 A 197 ALA THR LYS ALA LYS GLN PHE GLN ARG SER GLN LEU VAL SEQRES 7 A 197 LEU VAL THR LYS GLY PHE ASN LEU PHE CYS LYS TYR ILE SEQRES 8 A 197 TYR HIS VAL LEU TRP HIS SER GLU PHE PRO LYS PRO GLN SEQRES 9 A 197 ILE LEU LYS HIS ALA MET LYS GLU CYS LEU GLU LYS CYS SEQRES 10 A 197 ILE GLU GLN ASN ILE THR SER ILE SER PHE PRO ALA LEU SEQRES 11 A 197 GLY THR GLY ASN MET GLU ILE LYS LYS GLU THR ALA ALA SEQRES 12 A 197 GLU ILE LEU PHE ASP GLU VAL LEU THR PHE ALA LYS ASP SEQRES 13 A 197 HIS VAL LYS HIS GLN LEU THR VAL LYS PHE VAL ILE PHE SEQRES 14 A 197 PRO THR ASP LEU GLU ILE TYR LYS ALA PHE SER SER GLU SEQRES 15 A 197 MET ALA LYS ARG SER LYS MET LEU SER LEU ASN ASN TYR SEQRES 16 A 197 SER VAL SEQRES 1 B 197 GLY ALA MET ALA THR THR PRO SER PHE ASN ALA MET VAL SEQRES 2 B 197 VAL ASN ASN LEU THR LEU GLN ILE VAL GLN GLY HIS ILE SEQRES 3 B 197 GLU TRP GLN THR ALA ASP VAL ILE VAL ASN SER VAL ASN SEQRES 4 B 197 PRO HIS ASP ILE THR VAL GLY GLY VAL ALA LYS SER ILE SEQRES 5 B 197 LEU GLN GLN ALA GLY VAL GLU MET LYS SER GLU PHE LEU SEQRES 6 B 197 ALA THR LYS ALA LYS GLN PHE GLN ARG SER GLN LEU VAL SEQRES 7 B 197 LEU VAL THR LYS GLY PHE ASN LEU PHE CYS LYS TYR ILE SEQRES 8 B 197 TYR HIS VAL LEU TRP HIS SER GLU PHE PRO LYS PRO GLN SEQRES 9 B 197 ILE LEU LYS HIS ALA MET LYS GLU CYS LEU GLU LYS CYS SEQRES 10 B 197 ILE GLU GLN ASN ILE THR SER ILE SER PHE PRO ALA LEU SEQRES 11 B 197 GLY THR GLY ASN MET GLU ILE LYS LYS GLU THR ALA ALA SEQRES 12 B 197 GLU ILE LEU PHE ASP GLU VAL LEU THR PHE ALA LYS ASP SEQRES 13 B 197 HIS VAL LYS HIS GLN LEU THR VAL LYS PHE VAL ILE PHE SEQRES 14 B 197 PRO THR ASP LEU GLU ILE TYR LYS ALA PHE SER SER GLU SEQRES 15 B 197 MET ALA LYS ARG SER LYS MET LEU SER LEU ASN ASN TYR SEQRES 16 B 197 SER VAL HET NO3 A 501 4 HET MES A 502 12 HET NO3 B 501 4 HET MES B 502 12 HETNAM NO3 NITRATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 NO3 2(N O3 1-) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 7 HOH *86(H2 O) HELIX 1 AA1 HIS A 325 GLN A 329 5 5 HELIX 2 AA2 GLY A 346 GLY A 357 1 12 HELIX 3 AA3 GLY A 357 ALA A 369 1 13 HELIX 4 AA4 PRO A 401 GLN A 420 1 20 HELIX 5 AA5 LYS A 438 HIS A 457 1 20 HELIX 6 AA6 ASP A 472 LEU A 492 1 21 HELIX 7 AA7 HIS B 325 GLN B 329 5 5 HELIX 8 AA8 GLY B 346 GLY B 357 1 12 HELIX 9 AA9 GLY B 357 LYS B 370 1 14 HELIX 10 AB1 PRO B 401 GLN B 420 1 20 HELIX 11 AB2 LYS B 438 HIS B 457 1 20 HELIX 12 AB3 ASP B 472 LEU B 490 1 19 SHEET 1 AA1 8 VAL A 378 LYS A 382 0 SHEET 2 AA1 8 TYR A 390 LEU A 395 -1 O HIS A 393 N LEU A 379 SHEET 3 AA1 8 VAL A 333 VAL A 338 1 N VAL A 338 O VAL A 394 SHEET 4 AA1 8 SER A 424 PHE A 427 1 O SER A 426 N VAL A 333 SHEET 5 AA1 8 LEU A 462 ILE A 468 1 O VAL A 467 N PHE A 427 SHEET 6 AA1 8 LEU A 317 GLN A 323 1 N THR A 318 O VAL A 464 SHEET 7 AA1 8 ALA A 311 VAL A 314 -1 N VAL A 314 O LEU A 317 SHEET 8 AA1 8 ASN B 494 TYR B 495 1 O TYR B 495 N VAL A 313 SHEET 1 AA2 7 ALA B 311 VAL B 314 0 SHEET 2 AA2 7 LEU B 317 GLN B 323 -1 O LEU B 317 N VAL B 314 SHEET 3 AA2 7 LEU B 462 ILE B 468 1 O VAL B 464 N THR B 318 SHEET 4 AA2 7 SER B 424 PHE B 427 1 N PHE B 427 O LYS B 465 SHEET 5 AA2 7 VAL B 333 VAL B 338 1 N VAL B 333 O SER B 426 SHEET 6 AA2 7 TYR B 390 LEU B 395 1 O VAL B 394 N VAL B 338 SHEET 7 AA2 7 VAL B 378 LYS B 382 -1 N LEU B 379 O HIS B 393 CRYST1 53.988 73.917 58.432 90.00 117.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018523 0.000000 0.009544 0.00000 SCALE2 0.000000 0.013529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019252 0.00000 CONECT 2902 2903 2904 2905 CONECT 2903 2902 CONECT 2904 2902 CONECT 2905 2902 CONECT 2906 2907 2911 CONECT 2907 2906 2908 CONECT 2908 2907 2909 CONECT 2909 2908 2910 2912 CONECT 2910 2909 2911 CONECT 2911 2906 2910 CONECT 2912 2909 2913 CONECT 2913 2912 2914 CONECT 2914 2913 2915 2916 2917 CONECT 2915 2914 CONECT 2916 2914 CONECT 2917 2914 CONECT 2918 2919 2920 2921 CONECT 2919 2918 CONECT 2920 2918 CONECT 2921 2918 CONECT 2922 2923 2927 CONECT 2923 2922 2924 CONECT 2924 2923 2925 CONECT 2925 2924 2926 2928 CONECT 2926 2925 2927 CONECT 2927 2922 2926 CONECT 2928 2925 2929 CONECT 2929 2928 2930 CONECT 2930 2929 2931 2932 2933 CONECT 2931 2930 CONECT 2932 2930 CONECT 2933 2930 MASTER 377 0 4 12 15 0 0 6 3010 2 32 32 END