HEADER TRANSFERASE 13-JUL-26 32JN TITLE STRUCTURE OF THE PATHOGENIC VARIANT P157S OF HUMAN SHMT2 IN THE APO TITLE 2 OPEN DIMERIC CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SHMT,GLYCINE HYDROXYMETHYLTRANSFERASE,SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: CRYSTALLIZED CONSTRUCT: SHMT2 ISOFORM 3 DIFFERENCES COMPND 9 FROM CANONICAL ISOFORM: 1-21 MISSING AND ADDITIONAL RESIDUES (GSH) AT COMPND 10 THE N-TER BELONGING TO CLEAVED HIS-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHMT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28(B)+ KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GIARDINA,G.BOUMIS,A.DI MATTEO,S.BRECCIA REVDAT 1 02-SEP-26 32JN 0 JRNL AUTH G.GIARDINA,G.BOUMIS,A.DI MATTEO,S.BRECCIA JRNL TITL STRUCTURAL AND FUNCTIONAL DEFECTS OF MITOCHONDRIAL SERINE JRNL TITL 2 HYDROXYMETHYLTRANSFERASE GENETIC VARIANTS RESPONSIBLE FOR A JRNL TITL 3 NOVEL NEURODEVELOPMENTAL SYNDROME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 12814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.4170 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.09000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.368 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.382 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3321 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3124 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4504 ; 1.208 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7140 ; 0.420 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ; 7.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;14.294 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4045 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 4.925 ; 7.944 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1718 ; 4.925 ; 7.944 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 7.585 ;14.295 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2145 ; 7.583 ;14.295 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1603 ; 5.788 ; 8.448 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1604 ; 5.786 ; 8.448 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2361 ; 9.319 ;15.319 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3735 ;13.550 ;74.270 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3736 ;13.549 ;74.290 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 32JN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1292158927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0596 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 (BUILT 20210323) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.658 REMARK 200 RESOLUTION RANGE LOW (A) : 57.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOORPHEUS SCREEN (MOLECULAR REMARK 280 DIMENSIONS) CONDITION F9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.35800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.07650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.35800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.07650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.08294 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.34050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 HIS A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 GLN A 33 REMARK 465 THR A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 GLU A 38 REMARK 465 ALA A 39 REMARK 465 ASN A 40 REMARK 465 ARG A 41 REMARK 465 TYR A 100 REMARK 465 PRO A 101 REMARK 465 GLY A 102 REMARK 465 LYS A 103 REMARK 465 ARG A 104 REMARK 465 TYR A 105 REMARK 465 TYR A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 LEU A 166 REMARK 465 PRO A 167 REMARK 465 ASP A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 HIS A 171 REMARK 465 LEU A 172 REMARK 465 THR A 173 REMARK 465 HIS A 174 REMARK 465 GLY A 175 REMARK 465 TYR A 176 REMARK 465 MET A 177 REMARK 465 SER A 178 REMARK 465 ASP A 179 REMARK 465 VAL A 180 REMARK 465 LYS A 181 REMARK 465 ARG A 182 REMARK 465 ILE A 183 REMARK 465 SER A 184 REMARK 465 ALA A 185 REMARK 465 THR A 186 REMARK 465 SER A 187 REMARK 465 ILE A 188 REMARK 465 PHE A 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 43 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 43 CZ3 CH2 REMARK 470 ARG A 62 CZ NH1 NH2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 SER A 97 OG REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 ILE A 115 CD1 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 262 NZ REMARK 470 LYS A 269 NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LEU A 323 CD1 CD2 REMARK 470 ILE A 419 CG1 CG2 CD1 REMARK 470 GLN A 435 OE1 NE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 LYS A 464 CB CG CD CE NZ REMARK 470 GLN A 466 CG CD OE1 NE2 REMARK 470 LYS A 474 CG CD CE NZ REMARK 470 GLN A 480 CD OE1 NE2 REMARK 470 ASP A 502 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 142 -158.32 -148.07 REMARK 500 LYS A 280 -93.18 -98.53 REMARK 500 LYS A 302 -71.52 -75.84 REMARK 500 THR A 310 45.60 -140.37 REMARK 500 ASN A 379 -144.04 -129.46 REMARK 500 SER A 404 32.39 70.14 REMARK 500 THR A 420 73.61 -119.37 REMARK 500 ALA A 463 -70.28 -122.91 REMARK 500 LEU A 472 -39.66 -39.35 REMARK 500 PRO A 499 154.03 -49.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 66 0.09 SIDE CHAIN REMARK 500 ARG A 305 0.07 SIDE CHAIN REMARK 500 ARG A 368 0.10 SIDE CHAIN REMARK 500 ARG A 443 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 32JA RELATED DB: PDB REMARK 900 DIFFERENT MUTATION OF THE SAME PROTEIN REMARK 900 RELATED ID: 32JC RELATED DB: PDB REMARK 900 DIFFERENT MUTATION OF THE SAME PROTEIN DBREF 32JN A 22 504 UNP P34897 GLYM_HUMAN 22 504 SEQADV 32JN GLY A 19 UNP P34897 EXPRESSION TAG SEQADV 32JN SER A 20 UNP P34897 EXPRESSION TAG SEQADV 32JN HIS A 21 UNP P34897 EXPRESSION TAG SEQADV 32JN SER A 157 UNP P34897 PRO 157 VARIANT SEQRES 1 A 486 GLY SER HIS MET ALA ILE ARG ALA GLN HIS SER ASN ALA SEQRES 2 A 486 ALA GLN THR GLN THR GLY GLU ALA ASN ARG GLY TRP THR SEQRES 3 A 486 GLY GLN GLU SER LEU SER ASP SER ASP PRO GLU MET TRP SEQRES 4 A 486 GLU LEU LEU GLN ARG GLU LYS ASP ARG GLN CYS ARG GLY SEQRES 5 A 486 LEU GLU LEU ILE ALA SER GLU ASN PHE CYS SER ARG ALA SEQRES 6 A 486 ALA LEU GLU ALA LEU GLY SER CYS LEU ASN ASN LYS TYR SEQRES 7 A 486 SER GLU GLY TYR PRO GLY LYS ARG TYR TYR GLY GLY ALA SEQRES 8 A 486 GLU VAL VAL ASP GLU ILE GLU LEU LEU CYS GLN ARG ARG SEQRES 9 A 486 ALA LEU GLU ALA PHE ASP LEU ASP PRO ALA GLN TRP GLY SEQRES 10 A 486 VAL ASN VAL GLN PRO TYR SER GLY SER PRO ALA ASN LEU SEQRES 11 A 486 ALA VAL TYR THR ALA LEU LEU GLN SER HIS ASP ARG ILE SEQRES 12 A 486 MET GLY LEU ASP LEU PRO ASP GLY GLY HIS LEU THR HIS SEQRES 13 A 486 GLY TYR MET SER ASP VAL LYS ARG ILE SER ALA THR SER SEQRES 14 A 486 ILE PHE PHE GLU SER MET PRO TYR LYS LEU ASN PRO LYS SEQRES 15 A 486 THR GLY LEU ILE ASP TYR ASN GLN LEU ALA LEU THR ALA SEQRES 16 A 486 ARG LEU PHE ARG PRO ARG LEU ILE ILE ALA GLY THR SER SEQRES 17 A 486 ALA TYR ALA ARG LEU ILE ASP TYR ALA ARG MET ARG GLU SEQRES 18 A 486 VAL CYS ASP GLU VAL LYS ALA HIS LEU LEU ALA ASP MET SEQRES 19 A 486 ALA HIS ILE SER GLY LEU VAL ALA ALA LYS VAL ILE PRO SEQRES 20 A 486 SER PRO PHE LYS HIS ALA ASP ILE VAL THR THR THR THR SEQRES 21 A 486 HIS LYS THR LEU ARG GLY ALA ARG SER GLY LEU ILE PHE SEQRES 22 A 486 TYR ARG LYS GLY VAL LYS ALA VAL ASP PRO LYS THR GLY SEQRES 23 A 486 ARG GLU ILE PRO TYR THR PHE GLU ASP ARG ILE ASN PHE SEQRES 24 A 486 ALA VAL PHE PRO SER LEU GLN GLY GLY PRO HIS ASN HIS SEQRES 25 A 486 ALA ILE ALA ALA VAL ALA VAL ALA LEU LYS GLN ALA CYS SEQRES 26 A 486 THR PRO MET PHE ARG GLU TYR SER LEU GLN VAL LEU LYS SEQRES 27 A 486 ASN ALA ARG ALA MET ALA ASP ALA LEU LEU GLU ARG GLY SEQRES 28 A 486 TYR SER LEU VAL SER GLY GLY THR ASP ASN HIS LEU VAL SEQRES 29 A 486 LEU VAL ASP LEU ARG PRO LYS GLY LEU ASP GLY ALA ARG SEQRES 30 A 486 ALA GLU ARG VAL LEU GLU LEU VAL SER ILE THR ALA ASN SEQRES 31 A 486 LYS ASN THR CYS PRO GLY ASP ARG SER ALA ILE THR PRO SEQRES 32 A 486 GLY GLY LEU ARG LEU GLY ALA PRO ALA LEU THR SER ARG SEQRES 33 A 486 GLN PHE ARG GLU ASP ASP PHE ARG ARG VAL VAL ASP PHE SEQRES 34 A 486 ILE ASP GLU GLY VAL ASN ILE GLY LEU GLU VAL LYS SER SEQRES 35 A 486 LYS THR ALA LYS LEU GLN ASP PHE LYS SER PHE LEU LEU SEQRES 36 A 486 LYS ASP SER GLU THR SER GLN ARG LEU ALA ASN LEU ARG SEQRES 37 A 486 GLN ARG VAL GLU GLN PHE ALA ARG ALA PHE PRO MET PRO SEQRES 38 A 486 GLY PHE ASP GLU HIS FORMUL 2 HOH *39(H2 O) HELIX 1 AA1 SER A 48 ASP A 53 1 6 HELIX 2 AA2 ASP A 53 ARG A 69 1 17 HELIX 3 AA3 SER A 81 GLY A 89 1 9 HELIX 4 AA4 SER A 90 ASN A 94 5 5 HELIX 5 AA5 VAL A 111 PHE A 127 1 17 HELIX 6 AA6 SER A 142 LEU A 155 1 14 HELIX 7 AA7 ASP A 205 ARG A 217 1 13 HELIX 8 AA8 ASP A 233 VAL A 244 1 12 HELIX 9 AA9 ILE A 255 ALA A 261 1 7 HELIX 10 AB1 SER A 266 HIS A 270 5 5 HELIX 11 AB2 PHE A 311 PHE A 320 1 10 HELIX 12 AB3 HIS A 328 CYS A 343 1 16 HELIX 13 AB4 THR A 344 ARG A 368 1 25 HELIX 14 AB5 SER A 374 GLY A 376 5 3 HELIX 15 AB6 ARG A 387 GLY A 390 5 4 HELIX 16 AB7 ASP A 392 VAL A 403 1 12 HELIX 17 AB8 ALA A 428 SER A 433 1 6 HELIX 18 AB9 ARG A 437 LYS A 461 1 25 HELIX 19 AC1 LYS A 464 ASP A 475 1 12 HELIX 20 AC2 ASP A 475 ARG A 494 1 20 SHEET 1 AA1 2 LEU A 71 GLU A 72 0 SHEET 2 AA1 2 ILE A 405 THR A 406 1 O THR A 406 N LEU A 71 SHEET 1 AA2 7 TRP A 134 ASN A 137 0 SHEET 2 AA2 7 GLY A 288 ARG A 293 -1 O TYR A 292 N GLY A 135 SHEET 3 AA2 7 ILE A 273 THR A 277 -1 N VAL A 274 O PHE A 291 SHEET 4 AA2 7 HIS A 247 ASP A 251 1 N ALA A 250 O ILE A 273 SHEET 5 AA2 7 LEU A 220 ALA A 223 1 N ILE A 221 O HIS A 247 SHEET 6 AA2 7 ILE A 161 GLY A 163 1 N MET A 162 O ILE A 222 SHEET 7 AA2 7 SER A 192 PRO A 194 1 O MET A 193 N ILE A 161 SHEET 1 AA3 2 VAL A 296 VAL A 299 0 SHEET 2 AA3 2 GLU A 306 PRO A 308 -1 O ILE A 307 N LYS A 297 SHEET 1 AA4 4 SER A 371 LEU A 372 0 SHEET 2 AA4 4 LEU A 381 ASP A 385 -1 O ASP A 385 N SER A 371 SHEET 3 AA4 4 GLY A 423 GLY A 427 -1 O LEU A 424 N VAL A 384 SHEET 4 AA4 4 ASN A 408 ASN A 410 -1 N ASN A 408 O ARG A 425 CISPEP 1 PHE A 320 PRO A 321 0 1.05 CRYST1 94.716 74.153 74.349 90.00 108.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010558 0.000000 0.003616 0.00000 SCALE2 0.000000 0.013486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014217 0.00000 MASTER 390 0 0 20 15 0 0 6 3289 1 0 38 END