HEADER PROTEIN BINDING 17-JUL-26 32NZ TITLE AN ACTIVATING H90 SCFV BOUND TO THE HYALURONAN-BINDING DOMAIN OF HUMAN TITLE 2 CD44 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H90 SCFV; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CD44 ANTIGEN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: CDW44,EPICAN,EXTRACELLULAR MATRIX RECEPTOR III,ECMR-III,GP90 COMPND 9 LYMPHOCYTE HOMING/ADHESION RECEPTOR,HUTCH-I,HEPARAN SULFATE COMPND 10 PROTEOGLYCAN,HERMES ANTIGEN,HYALURONATE RECEPTOR,PHAGOCYTIC COMPND 11 GLYCOPROTEIN 1,PGP-1,PHAGOCYTIC GLYCOPROTEIN I,PGP-I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PNIC-CTH0; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: CD44, LHR, MDU2, MDU3, MIC4; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PNIC-CTH0 KEYWDS SCFV, HYALURONAN, ANTIBODY, CD44, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.J.BRADSHAW,A.J.R.WILKES,V.L.KATIS,J.A.NEWMAN,O.GILEADI REVDAT 1 12-AUG-26 32NZ 0 JRNL AUTH W.J.BRADSHAW,A.J.R.WILKES,V.L.KATIS,J.A.NEWMAN,O.GILEADI JRNL TITL AN ACTIVATING H90 SCFV BOUND TO THE HYALURONAN-BINDING JRNL TITL 2 DOMAIN OF HUMAN CD44 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.994 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27100 REMARK 3 B22 (A**2) : -1.27100 REMARK 3 B33 (A**2) : 2.54300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2936 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2696 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3987 ; 1.414 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6220 ; 0.496 ; 1.747 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 7.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;10.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;12.489 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3482 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 476 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 40 ; 0.135 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1463 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.062 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 4.363 ; 4.648 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1483 ; 4.358 ; 4.648 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1849 ; 6.300 ; 8.312 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1850 ; 6.299 ; 8.316 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1453 ; 4.725 ; 5.057 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1454 ; 4.725 ; 5.061 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2137 ; 6.940 ; 9.095 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2138 ; 6.939 ; 9.099 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 32NZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1292158197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44688 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 44.80 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.40 REMARK 200 R MERGE FOR SHELL (I) : 5.08700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 1% PEG 2000 MME, 1 M REMARK 280 SUCCINIC ACID, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.66650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.26900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.26900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.33325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.26900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.26900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.99975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.26900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.26900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.33325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.26900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.26900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.99975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.66650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 123 REMARK 465 THR A 124 REMARK 465 PRO A 125 REMARK 465 PRO A 126 REMARK 465 SER A 127 REMARK 465 VAL A 128 REMARK 465 TYR A 129 REMARK 465 PRO A 130 REMARK 465 LEU A 131 REMARK 465 ALA A 132 REMARK 465 PRO A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 THR A 136 REMARK 465 ALA A 137 REMARK 465 GLN A 138 REMARK 465 THR A 139 REMARK 465 ASN A 140 REMARK 465 SER A 141 REMARK 465 MET A 142 REMARK 465 VAL A 143 REMARK 465 THR A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 GLY A 147 REMARK 465 GLY A 148 REMARK 465 GLY A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 TYR A 277 REMARK 465 LYS A 278 REMARK 465 MET B 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 46 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 188 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 101 106.09 -59.55 REMARK 500 VAL A 217 -47.86 77.43 REMARK 500 SER B 112 -157.12 -119.62 REMARK 500 GLU B 126 -162.23 68.14 REMARK 500 THR B 133 -49.11 57.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 243 0.09 SIDE CHAIN REMARK 500 ARG B 41 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 544 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 424 O REMARK 620 2 HOH A 464 O 80.6 REMARK 620 3 HOH B 230 O 157.1 79.0 REMARK 620 4 HOH B 231 O 93.3 150.2 99.1 REMARK 620 5 HOH B 256 O 100.4 118.0 98.4 91.7 REMARK 620 N 1 2 3 4 DBREF 32NZ A 1 278 PDB 32NZ 32NZ 1 278 DBREF 32NZ B 20 150 UNP P16070 CD44_HUMAN 20 150 SEQADV 32NZ MET B 17 UNP P16070 INITIATING METHIONINE SEQADV 32NZ ALA B 18 UNP P16070 EXPRESSION TAG SEQADV 32NZ MET B 19 UNP P16070 EXPRESSION TAG SEQRES 1 A 278 GLN VAL GLN LEU GLN GLN SER GLY ASP GLU LEU VAL ARG SEQRES 2 A 278 PRO GLY SER SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 A 278 TYR ALA PHE SER ARG TYR TRP MET ASN TRP VAL LYS GLN SEQRES 4 A 278 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY GLN ILE TYR SEQRES 5 A 278 PRO GLY ASP GLY ASP THR ASN TYR ASN GLY LYS PHE LYS SEQRES 6 A 278 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 A 278 ALA TYR MET GLN LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 A 278 ALA VAL TYR PHE CYS ALA ARG ARG ARG TRP SER ASP TYR SEQRES 9 A 278 PHE GLY MET ASP TYR TRP GLY GLN GLY THR SER VAL THR SEQRES 10 A 278 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 A 278 LEU ALA PRO GLY SER THR ALA GLN THR ASN SER MET VAL SEQRES 12 A 278 THR LEU GLY GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 13 A 278 GLY GLY GLY GLY SER ASP VAL VAL MET THR GLN THR PRO SEQRES 14 A 278 LEU THR LEU SER VAL THR ILE GLY GLN PRO ALA SER ILE SEQRES 15 A 278 SER CYS LYS SER SER GLN SER LEU LEU HIS SER ASN GLY SEQRES 16 A 278 LYS THR TYR LEU ASN TRP LEU LEU GLN ARG PRO GLY GLN SEQRES 17 A 278 SER PRO LYS LEU LEU ILE TYR LEU VAL SER LYS LEU GLU SEQRES 18 A 278 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY SEQRES 19 A 278 THR GLU PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU SEQRES 20 A 278 ASP SER GLY VAL TYR TYR CYS LEU GLN ALA THR HIS PHE SEQRES 21 A 278 PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS SEQRES 22 A 278 ARG THR ASP TYR LYS SEQRES 1 B 134 MET ALA MET ALA GLN ILE ASP LEU ASN ILE THR CYS ARG SEQRES 2 B 134 PHE ALA GLY VAL PHE HIS VAL GLU LYS ASN GLY ARG TYR SEQRES 3 B 134 SER ILE SER ARG THR GLU ALA ALA ASP LEU CYS LYS ALA SEQRES 4 B 134 PHE ASN SER THR LEU PRO THR MET ALA GLN MET GLU LYS SEQRES 5 B 134 ALA LEU SER ILE GLY PHE GLU THR CYS ARG TYR GLY PHE SEQRES 6 B 134 ILE GLU GLY HIS VAL VAL ILE PRO ARG ILE HIS PRO ASN SEQRES 7 B 134 SER ILE CYS ALA ALA ASN ASN THR GLY VAL TYR ILE LEU SEQRES 8 B 134 THR SER ASN THR SER GLN TYR ASP THR TYR CYS PHE ASN SEQRES 9 B 134 ALA SER ALA PRO PRO GLU GLU ASP CYS THR SER VAL THR SEQRES 10 B 134 ASP LEU PRO ASN ALA PHE ASP GLY PRO ILE THR ILE THR SEQRES 11 B 134 ILE VAL ASN ARG HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *261(H2 O) HELIX 1 AA1 ALA A 28 TYR A 32 5 5 HELIX 2 AA2 GLY A 62 LYS A 65 5 4 HELIX 3 AA3 THR A 87 SER A 91 5 5 HELIX 4 AA4 GLU A 245 SER A 249 5 5 HELIX 5 AA5 SER B 45 PHE B 56 1 12 HELIX 6 AA6 THR B 62 ILE B 72 1 11 HELIX 7 AA7 LEU B 135 PHE B 139 5 5 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N ILE A 20 SHEET 4 AA1 4 ALA A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLU A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O SER A 115 N GLU A 10 SHEET 3 AA2 6 ALA A 92 ARG A 99 -1 N ALA A 92 O VAL A 116 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N ASN A 35 O ALA A 97 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O ILE A 51 N MET A 34 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ASN A 59 N GLN A 50 SHEET 1 AA3 4 GLU A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O SER A 115 N GLU A 10 SHEET 3 AA3 4 ALA A 92 ARG A 99 -1 N ALA A 92 O VAL A 116 SHEET 4 AA3 4 MET A 107 TRP A 110 -1 O TYR A 109 N ARG A 98 SHEET 1 AA4 4 MET A 165 THR A 168 0 SHEET 2 AA4 4 ALA A 180 SER A 186 -1 O LYS A 185 N THR A 166 SHEET 3 AA4 4 GLU A 236 ILE A 241 -1 O ILE A 241 N ALA A 180 SHEET 4 AA4 4 PHE A 228 SER A 233 -1 N SER A 229 O LYS A 240 SHEET 1 AA5 6 THR A 171 THR A 175 0 SHEET 2 AA5 6 THR A 268 LYS A 273 1 O GLU A 271 N LEU A 172 SHEET 3 AA5 6 GLY A 250 GLN A 256 -1 N GLY A 250 O LEU A 270 SHEET 4 AA5 6 LEU A 199 GLN A 204 -1 N LEU A 202 O TYR A 253 SHEET 5 AA5 6 LYS A 211 TYR A 215 -1 O LEU A 213 N TRP A 201 SHEET 6 AA5 6 LYS A 219 LEU A 220 -1 O LYS A 219 N TYR A 215 SHEET 1 AA6 4 THR A 171 THR A 175 0 SHEET 2 AA6 4 THR A 268 LYS A 273 1 O GLU A 271 N LEU A 172 SHEET 3 AA6 4 GLY A 250 GLN A 256 -1 N GLY A 250 O LEU A 270 SHEET 4 AA6 4 THR A 263 PHE A 264 -1 O THR A 263 N GLN A 256 SHEET 1 AA7 7 GLY B 103 ILE B 106 0 SHEET 2 AA7 7 HIS B 85 ARG B 90 -1 N ARG B 90 O GLY B 103 SHEET 3 AA7 7 GLY B 80 ILE B 82 -1 N ILE B 82 O HIS B 85 SHEET 4 AA7 7 ASP B 115 PHE B 119 1 O TYR B 117 N PHE B 81 SHEET 5 AA7 7 VAL B 33 LYS B 38 -1 N VAL B 36 O THR B 116 SHEET 6 AA7 7 ILE B 22 THR B 27 -1 N ASN B 25 O GLU B 37 SHEET 7 AA7 7 ILE B 143 VAL B 148 1 O VAL B 148 N ILE B 26 SHEET 1 AA8 2 ARG B 29 PHE B 30 0 SHEET 2 AA8 2 GLU B 127 ASP B 128 -1 O ASP B 128 N ARG B 29 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.07 SSBOND 2 CYS A 184 CYS A 254 1555 1555 2.19 SSBOND 3 CYS B 28 CYS B 129 1555 1555 2.17 SSBOND 4 CYS B 53 CYS B 118 1555 1555 2.11 SSBOND 5 CYS B 77 CYS B 97 1555 1555 2.06 LINK NA NA A 301 O HOH A 424 1555 1555 2.45 LINK NA NA A 301 O HOH A 464 1555 1555 2.36 LINK NA NA A 301 O HOH B 230 1555 1555 2.35 LINK NA NA A 301 O HOH B 231 1555 1555 2.35 LINK NA NA A 301 O HOH B 256 1555 1555 2.34 CISPEP 1 THR A 168 PRO A 169 0 -2.60 CISPEP 2 PHE A 260 PRO A 261 0 0.20 CRYST1 92.538 92.538 109.333 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010806 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009146 0.00000 CONECT 163 747 CONECT 747 163 CONECT 1127 1671 CONECT 1671 1127 CONECT 1924 2710 CONECT 2122 2629 CONECT 2307 2469 CONECT 2469 2307 CONECT 2629 2122 CONECT 2710 1924 CONECT 2870 2894 2934 3044 3045 CONECT 2870 3070 CONECT 2894 2870 CONECT 2934 2870 CONECT 3044 2870 CONECT 3045 2870 CONECT 3070 2870 MASTER 407 0 1 7 37 0 0 6 3124 2 17 33 END