HEADER CARBOHYDRATE 29-JUL-26 32XL TITLE KINEOCOCCUS SICCUS GH5_7 MANNANASE, PRODUCT BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH5_7 MANNANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: [1-38] PELB SIGNAL SEQUENCE, 6HIS, TEV SITE. ALL COMPND 7 REMOVED DURING MATURATION AND PROTEIN PURIFICATION. D40 MATCHES COMPND 8 NATIVE PROTEIN D53 ONWARDS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KINEOCOCCUS SICCUS; SOURCE 3 ORGANISM_TAXID: 2696567; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS LYSY/IQ; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET DERIVED KEYWDS HYDROLASE, TIM, PRODUCT, MANNANASE, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BLOCH REVDAT 1 04-NOV-26 32XL 0 JRNL AUTH Y.BLOCH JRNL TITL DEFINING GLYCOSYL HYDROLASE FAMILY 5_7 MANNAN INTERACTION JRNL TITL 2 THROUGH THE IDENTIFICATION AND STRUCTURAL CHARACTERIZATION JRNL TITL 3 OF TWO ACTINOBACTERIA MANNANASES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9200 - 3.7800 0.98 3732 149 0.1412 0.1456 REMARK 3 2 3.7800 - 3.0000 0.99 3643 147 0.1288 0.1513 REMARK 3 3 3.0000 - 2.6200 1.00 3605 144 0.1271 0.1347 REMARK 3 4 2.6200 - 2.3800 1.00 3600 144 0.1227 0.1353 REMARK 3 5 2.3800 - 2.2100 1.00 3563 144 0.1178 0.1372 REMARK 3 6 2.2100 - 2.0800 1.00 3582 143 0.1212 0.1512 REMARK 3 7 2.0800 - 1.9800 1.00 3568 143 0.1287 0.1532 REMARK 3 8 1.9800 - 1.8900 1.00 3538 142 0.1460 0.1690 REMARK 3 9 1.8900 - 1.8200 0.99 3517 141 0.1592 0.1534 REMARK 3 10 1.8200 - 1.7600 1.00 3534 141 0.1692 0.2371 REMARK 3 11 1.7600 - 1.7000 1.00 3549 143 0.1830 0.1908 REMARK 3 12 1.7000 - 1.6500 1.00 3526 141 0.1968 0.2044 REMARK 3 13 1.6500 - 1.6100 1.00 3543 142 0.2172 0.2768 REMARK 3 14 1.6100 - 1.5700 0.96 3388 136 0.2465 0.2835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.137 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.027 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3249 REMARK 3 ANGLE : 0.811 4459 REMARK 3 CHIRALITY : 0.046 487 REMARK 3 PLANARITY : 0.007 577 REMARK 3 DIHEDRAL : 12.954 1201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2683 -14.7843 26.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0864 REMARK 3 T33: 0.0933 T12: 0.0107 REMARK 3 T13: -0.0058 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 5.3180 L22: 4.1415 REMARK 3 L33: 2.1837 L12: -1.1021 REMARK 3 L13: -2.2883 L23: -1.6245 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: -0.3940 S13: -0.2750 REMARK 3 S21: 0.2340 S22: 0.0731 S23: 0.0944 REMARK 3 S31: 0.0222 S32: 0.1211 S33: 0.0322 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8510 7.5360 15.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.0795 REMARK 3 T33: 0.1048 T12: -0.0044 REMARK 3 T13: -0.0012 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.5070 L22: 1.3646 REMARK 3 L33: 0.9762 L12: 0.3881 REMARK 3 L13: -0.2714 L23: -0.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0293 S13: 0.0981 REMARK 3 S21: -0.0983 S22: 0.0598 S23: -0.0889 REMARK 3 S31: -0.0460 S32: 0.0736 S33: -0.0450 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2492 7.8715 4.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.2462 REMARK 3 T33: 0.1614 T12: -0.0755 REMARK 3 T13: 0.0482 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 0.7419 L22: 2.3050 REMARK 3 L33: 2.1999 L12: -0.2716 REMARK 3 L13: 0.3111 L23: -0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.1067 S12: 0.2670 S13: 0.0923 REMARK 3 S21: -0.1037 S22: 0.1857 S23: -0.3537 REMARK 3 S31: -0.0823 S32: 0.4226 S33: -0.1049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1049 -1.7439 6.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.1150 REMARK 3 T33: 0.0728 T12: -0.0024 REMARK 3 T13: 0.0176 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.8947 L22: 0.4618 REMARK 3 L33: 0.5103 L12: 0.1374 REMARK 3 L13: 0.4945 L23: 0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.1774 S13: -0.0225 REMARK 3 S21: -0.0754 S22: 0.0548 S23: -0.0558 REMARK 3 S31: -0.0531 S32: 0.1334 S33: -0.0442 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8458 -10.5199 7.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0885 REMARK 3 T33: 0.1003 T12: -0.0009 REMARK 3 T13: 0.0000 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.7560 L22: 0.3966 REMARK 3 L33: 0.3111 L12: -0.0679 REMARK 3 L13: 0.1636 L23: 0.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0890 S13: -0.1008 REMARK 3 S21: -0.0337 S22: 0.0000 S23: 0.0084 REMARK 3 S31: 0.0323 S32: 0.0102 S33: -0.0124 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7666 2.1144 18.7631 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.0812 REMARK 3 T33: 0.0907 T12: 0.0036 REMARK 3 T13: -0.0041 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.8878 L22: 0.6243 REMARK 3 L33: 0.3437 L12: 0.1329 REMARK 3 L13: -0.0290 L23: 0.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.0158 S13: 0.0339 REMARK 3 S21: 0.0072 S22: -0.0325 S23: 0.0540 REMARK 3 S31: -0.0197 S32: -0.0090 S33: 0.0165 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4649 7.4212 23.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0812 REMARK 3 T33: 0.0962 T12: -0.0013 REMARK 3 T13: -0.0069 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.3824 L22: 1.3641 REMARK 3 L33: 0.7638 L12: -0.3682 REMARK 3 L13: 0.4258 L23: 0.5617 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0650 S13: 0.0444 REMARK 3 S21: 0.1134 S22: -0.0011 S23: 0.0842 REMARK 3 S31: -0.0297 S32: -0.0226 S33: -0.0384 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 32XL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1292159345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE 20230630 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 43.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.55 REMARK 200 R MERGE (I) : 0.22400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 43.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.09 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 30.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM EPPS PH 8.9, 200 MM MGCL2, REMARK 280 22.5% PEG3350. 2MG/ML 2P+1ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 GLN A -36 REMARK 465 LEU A -35 REMARK 465 LYS A -34 REMARK 465 TYR A -33 REMARK 465 LEU A -32 REMARK 465 LEU A -31 REMARK 465 PRO A -30 REMARK 465 THR A -29 REMARK 465 ALA A -28 REMARK 465 ALA A -27 REMARK 465 ALA A -26 REMARK 465 GLY A -25 REMARK 465 LEU A -24 REMARK 465 LEU A -23 REMARK 465 LEU A -22 REMARK 465 LEU A -21 REMARK 465 ALA A -20 REMARK 465 ALA A -19 REMARK 465 GLN A -18 REMARK 465 PRO A -17 REMARK 465 ALA A -16 REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 GLY A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 SER A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 12 O HOH A 505 1.56 REMARK 500 HH11 ARG A 38 O HOH A 503 1.58 REMARK 500 O HOH A 839 O HOH A 899 2.03 REMARK 500 O HOH A 814 O HOH A 827 2.04 REMARK 500 O HOH A 559 O HOH A 668 2.05 REMARK 500 O HOH A 832 O HOH A 865 2.16 REMARK 500 O HOH A 834 O HOH A 934 2.17 REMARK 500 O HOH A 682 O HOH A 692 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 59 87.06 -160.52 REMARK 500 ASP A 90 63.49 -114.37 REMARK 500 ASP A 336 -150.94 -145.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 939 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 528 O REMARK 620 2 HOH A 582 O 98.6 REMARK 620 3 HOH A 771 O 102.0 88.5 REMARK 620 4 HOH A 837 O 175.0 76.7 76.4 REMARK 620 5 HOH A 867 O 90.0 87.2 167.7 91.4 REMARK 620 6 HOH A 877 O 94.2 167.1 88.3 90.4 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 533 O REMARK 620 2 HOH A 598 O 86.5 REMARK 620 3 HOH A 607 O 93.9 90.7 REMARK 620 4 HOH A 623 O 175.9 91.1 89.5 REMARK 620 5 HOH A 633 O 93.9 178.1 87.4 88.6 REMARK 620 6 HOH A 838 O 89.2 93.4 175.0 87.6 88.5 REMARK 620 N 1 2 3 4 5 DBREF 32XL A -37 374 PDB 32XL 32XL -37 374 SEQRES 1 A 412 MET GLN LEU LYS TYR LEU LEU PRO THR ALA ALA ALA GLY SEQRES 2 A 412 LEU LEU LEU LEU ALA ALA GLN PRO ALA MET ALA GLY HIS SEQRES 3 A 412 HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE GLN SER SEQRES 4 A 412 ASP ARG SER PHE VAL THR ARG ASP GLY ASP ARG LEU GLU SEQRES 5 A 412 VAL GLY GLY LYS ASN PHE ARG PHE ALA GLY THR ASN ASN SEQRES 6 A 412 TYR TYR LEU HIS TYR LYS SER ALA ALA MET ARG ASP ALA SEQRES 7 A 412 VAL LEU ASP LYS ALA ALA ASP SER GLY PHE ASP VAL VAL SEQRES 8 A 412 ARG THR TRP GLY TRP PHE ASP VAL GLY THR GLU GLU ASP SEQRES 9 A 412 PRO THR ALA GLY SER GLN GLU ASN THR TYR LEU GLN TYR SEQRES 10 A 412 TRP ASP GLY SER GLY HIS PRO LYS TYR ASN ASP GLY PRO SEQRES 11 A 412 ASN GLY LEU ALA LYS LEU ASP ALA VAL ILE ALA ARG ALA SEQRES 12 A 412 GLN GLN ASP GLY LEU ARG LEU VAL ILE PRO PHE THR ASN SEQRES 13 A 412 ASN TRP GLU ASP PHE GLY GLY MET ASP LYS TYR VAL GLU SEQRES 14 A 412 TRP ALA GLY GLY ASP HIS HIS ASP ASP PHE TYR THR ASP SEQRES 15 A 412 PRO THR ILE ARG GLY TRP TYR LYS ASP TYR ILE SER HIS SEQRES 16 A 412 LEU LEU ASN HIS THR ASN THR ILE THR GLY VAL LYS TYR SEQRES 17 A 412 LYS ASP ASP PRO THR ILE MET THR TRP GLU LEU ALA ASN SEQRES 18 A 412 GLU PRO ARG CYS VAL GLY SER GLY ASP TYR PRO ALA SER SEQRES 19 A 412 SER THR CYS THR SER ASP THR LEU THR SER TRP ALA ASP SEQRES 20 A 412 ASP VAL SER THR PHE ILE LYS SER ILE ASP ARG ASN HIS SEQRES 21 A 412 LEU VAL SER VAL GLY ASP GLU GLY PHE PHE CYS ASP GLN SEQRES 22 A 412 PRO SER SER THR ASP TRP THR HIS ASN CYS SER GLN GLY SEQRES 23 A 412 VAL ASP THR VAL ARG PHE ALA ALA LEU LYS ASN VAL ASP SEQRES 24 A 412 VAL MET SER TYR HIS LEU TYR PRO ASP ALA TRP GLY LYS SEQRES 25 A 412 ASP ALA ASP TRP GLY THR GLN TYR ILE VAL ASP HIS ALA SEQRES 26 A 412 THR ALA ALA LYS GLN VAL GLY LYS PRO VAL MET LEU GLY SEQRES 27 A 412 GLU PHE GLY LEU ARG ASP LYS ALA MET ARG ASN PRO VAL SEQRES 28 A 412 TYR LYS ILE TRP THR ASP THR ALA TYR GLN SER GLY THR SEQRES 29 A 412 THR GLY ALA LEU TYR TRP ILE LEU SER ASP ALA GLN ASP SEQRES 30 A 412 ASP GLY THR LEU TYR PRO ASP TYR ASP GLY PHE THR VAL SEQRES 31 A 412 TYR CYS PRO SER ALA VAL CYS THR THR LEU SER ASN SER SEQRES 32 A 412 ALA THR ARG PHE ARG SER GLY THR LYS HET BMA B 1 23 HET BMA B 2 20 HET BMA B 3 21 HET BMA B 4 22 HET BMA C 1 23 HET BMA C 2 21 HET BMA C 3 22 HET MAN A 401 23 HET DMS A 402 10 HET MG A 403 1 HET MG A 404 1 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM DMS DIMETHYL SULFOXIDE HETNAM MG MAGNESIUM ION HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 BMA 7(C6 H12 O6) FORMUL 4 MAN C6 H12 O6 FORMUL 5 DMS C2 H6 O S FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *440(H2 O) HELIX 1 AA1 SER A 34 SER A 48 1 15 HELIX 2 AA2 GLY A 94 ASP A 108 1 15 HELIX 3 AA3 GLY A 125 GLY A 134 1 10 HELIX 4 AA4 ASP A 139 ASP A 144 1 6 HELIX 5 AA5 ASP A 144 ASN A 160 1 17 HELIX 6 AA6 LYS A 169 ASP A 173 5 5 HELIX 7 AA7 THR A 200 ASP A 219 1 20 HELIX 8 AA8 ASP A 250 LEU A 257 1 8 HELIX 9 AA9 TYR A 268 GLY A 273 1 6 HELIX 10 AB1 ASP A 275 GLY A 294 1 20 HELIX 11 AB2 ASP A 306 SER A 324 1 19 HELIX 12 AB3 SER A 356 GLY A 372 1 17 SHEET 1 AA1 3 VAL A 6 ASP A 9 0 SHEET 2 AA1 3 ARG A 12 VAL A 15 -1 O GLU A 14 N THR A 7 SHEET 3 AA1 3 LYS A 18 PHE A 20 -1 O PHE A 20 N LEU A 13 SHEET 1 AA2 8 LEU A 223 SER A 225 0 SHEET 2 AA2 8 ILE A 176 GLU A 180 1 N TRP A 179 O LEU A 223 SHEET 3 AA2 8 ARG A 111 PRO A 115 1 N LEU A 112 O MET A 177 SHEET 4 AA2 8 VAL A 52 ARG A 54 1 N VAL A 53 O ARG A 111 SHEET 5 AA2 8 PHE A 22 ASN A 26 1 N THR A 25 O ARG A 54 SHEET 6 AA2 8 GLY A 328 TYR A 331 1 O TYR A 331 N GLY A 24 SHEET 7 AA2 8 VAL A 297 PHE A 302 1 N LEU A 299 O LEU A 330 SHEET 8 AA2 8 MET A 263 LEU A 267 1 N MET A 263 O MET A 298 SHEET 1 AA3 2 GLN A 78 TRP A 80 0 SHEET 2 AA3 2 PRO A 86 TYR A 88 -1 O LYS A 87 N TYR A 79 SSBOND 1 CYS A 187 CYS A 199 1555 1555 2.04 SSBOND 2 CYS A 233 CYS A 245 1555 1555 2.04 SSBOND 3 CYS A 354 CYS A 359 1555 1555 2.04 LINK O4 BMAN A 401 C1 BMA B 3 1555 1555 1.44 LINK O4 ABMA B 1 C1 ABMA B 2 1555 1555 1.43 LINK O4 ABMA B 2 C1 BMA B 3 1555 1555 1.43 LINK O4 BMA B 3 C1 BMA B 4 1555 1555 1.44 LINK O4 BMA C 1 C1 BMA C 2 1555 1555 1.45 LINK O4 BMA C 2 C1 BMA C 3 1555 1555 1.45 LINK MG MG A 403 O HOH A 528 1555 1555 1.94 LINK MG MG A 403 O HOH A 582 1555 1555 2.09 LINK MG MG A 403 O HOH A 771 1555 1555 2.17 LINK MG MG A 403 O HOH A 837 1555 1555 2.11 LINK MG MG A 403 O HOH A 867 1555 2454 1.87 LINK MG MG A 403 O HOH A 877 1555 1555 2.10 LINK MG MG A 404 O HOH A 533 1555 1555 2.13 LINK MG MG A 404 O HOH A 598 1555 1555 2.07 LINK MG MG A 404 O HOH A 607 1555 2454 2.05 LINK MG MG A 404 O HOH A 623 1555 2454 2.08 LINK MG MG A 404 O HOH A 633 1555 2454 2.16 LINK MG MG A 404 O HOH A 838 1555 1555 2.11 CISPEP 1 TRP A 332 ILE A 333 0 7.39 CISPEP 2 CYS A 354 PRO A 355 0 -4.66 CRYST1 48.970 75.570 99.250 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010076 0.00000 CONECT 3002 3146 CONECT 3146 3002 CONECT 3704 3874 CONECT 3874 3704 CONECT 5603 5664 CONECT 5664 5603 CONECT 5889 5890 5895 5899 5901 CONECT 5890 5889 5891 5896 5902 CONECT 5891 5890 5892 5897 5903 CONECT 5892 5891 5893 5898 5904 CONECT 5893 5892 5894 5899 5905 CONECT 5894 5893 5900 5906 5907 CONECT 5895 5889 5908 CONECT 5896 5890 5909 CONECT 5897 5891 5910 CONECT 5898 5892 5912 CONECT 5899 5889 5893 CONECT 5900 5894 5911 CONECT 5901 5889 CONECT 5902 5890 CONECT 5903 5891 CONECT 5904 5892 CONECT 5905 5893 CONECT 5906 5894 CONECT 5907 5894 CONECT 5908 5895 CONECT 5909 5896 CONECT 5910 5897 CONECT 5911 5900 CONECT 5912 5898 5913 5921 CONECT 5913 5912 5914 5918 5923 CONECT 5914 5913 5915 5919 5924 CONECT 5915 5914 5916 5920 5925 CONECT 5916 5915 5917 5921 5926 CONECT 5917 5916 5922 5927 5928 CONECT 5918 5913 5929 CONECT 5919 5914 5930 CONECT 5920 5915 5932 CONECT 5921 5912 5916 CONECT 5922 5917 5931 CONECT 5923 5913 CONECT 5924 5914 CONECT 5925 5915 CONECT 5926 5916 CONECT 5927 5917 CONECT 5928 5917 CONECT 5929 5918 CONECT 5930 5919 CONECT 5931 5922 CONECT 5932 5920 5933 5941 5943 CONECT 5932 6050 CONECT 5933 5932 5934 5938 5944 CONECT 5934 5933 5935 5939 5945 CONECT 5935 5934 5936 5940 5946 CONECT 5936 5935 5937 5941 5947 CONECT 5937 5936 5942 5948 5949 CONECT 5938 5933 5950 CONECT 5939 5934 5951 CONECT 5940 5935 5953 CONECT 5941 5932 5936 CONECT 5942 5937 5952 CONECT 5943 5932 CONECT 5944 5933 CONECT 5945 5934 CONECT 5946 5935 CONECT 5947 5936 CONECT 5948 5937 CONECT 5949 5937 CONECT 5950 5938 CONECT 5951 5939 CONECT 5952 5942 CONECT 5953 5940 5954 5962 5964 CONECT 5954 5953 5955 5959 5965 CONECT 5955 5954 5956 5960 5966 CONECT 5956 5955 5957 5961 5967 CONECT 5957 5956 5958 5962 5968 CONECT 5958 5957 5963 5969 5970 CONECT 5959 5954 5971 CONECT 5960 5955 5972 CONECT 5961 5956 5973 CONECT 5962 5953 5957 CONECT 5963 5958 5974 CONECT 5964 5953 CONECT 5965 5954 CONECT 5966 5955 CONECT 5967 5956 CONECT 5968 5957 CONECT 5969 5958 CONECT 5970 5958 CONECT 5971 5959 CONECT 5972 5960 CONECT 5973 5961 CONECT 5974 5963 CONECT 5975 5976 5981 5985 5987 CONECT 5976 5975 5977 5982 5988 CONECT 5977 5976 5978 5983 5989 CONECT 5978 5977 5979 5984 5990 CONECT 5979 5978 5980 5985 5991 CONECT 5980 5979 5986 5992 5993 CONECT 5981 5975 5994 CONECT 5982 5976 5995 CONECT 5983 5977 5996 CONECT 5984 5978 5998 CONECT 5985 5975 5979 CONECT 5986 5980 5997 CONECT 5987 5975 CONECT 5988 5976 CONECT 5989 5977 CONECT 5990 5978 CONECT 5991 5979 CONECT 5992 5980 CONECT 5993 5980 CONECT 5994 5981 CONECT 5995 5982 CONECT 5996 5983 CONECT 5997 5986 CONECT 5998 5984 5999 6007 6009 CONECT 5999 5998 6000 6004 6010 CONECT 6000 5999 6001 6005 6011 CONECT 6001 6000 6002 6006 6012 CONECT 6002 6001 6003 6007 6013 CONECT 6003 6002 6008 6014 6015 CONECT 6004 5999 6016 CONECT 6005 6000 6017 CONECT 6006 6001 6019 CONECT 6007 5998 6002 CONECT 6008 6003 6018 CONECT 6009 5998 CONECT 6010 5999 CONECT 6011 6000 CONECT 6012 6001 CONECT 6013 6002 CONECT 6014 6003 CONECT 6015 6003 CONECT 6016 6004 CONECT 6017 6005 CONECT 6018 6008 CONECT 6019 6006 6020 6028 6030 CONECT 6020 6019 6021 6025 6031 CONECT 6021 6020 6022 6026 6032 CONECT 6022 6021 6023 6027 6033 CONECT 6023 6022 6024 6028 6034 CONECT 6024 6023 6029 6035 6036 CONECT 6025 6020 6037 CONECT 6026 6021 6038 CONECT 6027 6022 6039 CONECT 6028 6019 6023 CONECT 6029 6024 6040 CONECT 6030 6019 CONECT 6031 6020 CONECT 6032 6021 CONECT 6033 6022 CONECT 6034 6023 CONECT 6035 6024 CONECT 6036 6024 CONECT 6037 6025 CONECT 6038 6026 CONECT 6039 6027 CONECT 6040 6029 CONECT 6041 6042 6047 6051 6053 CONECT 6042 6041 6043 6048 6054 CONECT 6043 6042 6044 6049 6055 CONECT 6044 6043 6045 6050 6056 CONECT 6045 6044 6046 6051 6057 CONECT 6046 6045 6052 6058 6059 CONECT 6047 6041 6060 CONECT 6048 6042 6061 CONECT 6049 6043 6062 CONECT 6050 5932 6044 CONECT 6051 6041 6045 CONECT 6052 6046 6063 CONECT 6053 6041 CONECT 6054 6042 CONECT 6055 6043 CONECT 6056 6044 CONECT 6057 6045 CONECT 6058 6046 CONECT 6059 6046 CONECT 6060 6047 CONECT 6061 6048 CONECT 6062 6049 CONECT 6063 6052 CONECT 6064 6065 6066 6067 CONECT 6065 6064 CONECT 6066 6064 6068 6069 6070 CONECT 6067 6064 6071 6072 6073 CONECT 6068 6066 CONECT 6069 6066 CONECT 6070 6066 CONECT 6071 6067 CONECT 6072 6067 CONECT 6073 6067 CONECT 6074 6103 6158 6347 6413 CONECT 6074 6453 CONECT 6075 6108 6174 6414 CONECT 6103 6074 CONECT 6108 6075 CONECT 6158 6074 CONECT 6174 6075 CONECT 6347 6074 CONECT 6413 6074 CONECT 6414 6075 CONECT 6453 6074 MASTER 438 0 11 12 13 0 0 6 3458 1 203 32 END