HEADER HYDROLASE 04-AUG-26 33AO TITLE KINEOCOCCUS SICCUS GH5_7 MANNANASE, APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH5_7 MANNANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: [1-38] PELB SIGNAL SEQUENCE, 6HIS, TEV SITE. ALL COMPND 7 REMOVED DURING MATURATION AND PROTEIN PURIFICATION. D40 MATCHES COMPND 8 NATIVE PROTEIN D53 ONWARDS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KINEOCOCCUS SICCUS; SOURCE 3 ORGANISM_TAXID: 2696567; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS LYSY/IQ; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET DERIVED KEYWDS TIM, HYDROLASE, MANNANASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BLOCH REVDAT 1 04-NOV-26 33AO 0 JRNL AUTH Y.BLOCH JRNL TITL DEFINING GLYCOSYL HYDROLASE FAMILY 5_7 MANNAN INTERACTION JRNL TITL 2 THROUGH THE IDENTIFICATION AND STRUCTURAL CHARACTERIZATION JRNL TITL 3 OF TWO ACTINOBACTERIA MANNANASES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 69.0 REMARK 3 NUMBER OF REFLECTIONS : 35916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3128 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2830 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4286 ; 0.890 ; 1.786 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6411 ; 0.345 ; 1.795 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 7.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 5.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;11.767 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3869 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 791 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1529 ; 1.061 ; 1.186 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1529 ; 1.047 ; 1.187 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1925 ; 1.627 ; 2.130 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1926 ; 1.627 ; 2.133 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1599 ; 1.635 ; 1.337 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1600 ; 1.635 ; 1.339 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2352 ; 2.592 ; 2.379 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3938 ; 5.417 ;15.400 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3753 ; 4.716 ;13.510 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9741 -1.2513 -11.7948 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0196 REMARK 3 T33: 0.0092 T12: 0.0036 REMARK 3 T13: 0.0044 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3076 L22: 0.1091 REMARK 3 L33: 0.0868 L12: -0.0263 REMARK 3 L13: 0.0380 L23: -0.0799 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0294 S13: -0.0148 REMARK 3 S21: 0.0019 S22: 0.0069 S23: -0.0065 REMARK 3 S31: -0.0102 S32: -0.0214 S33: -0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 33AO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-26. REMARK 100 THE DEPOSITION ID IS D_1292159373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37814 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.547 REMARK 200 RESOLUTION RANGE LOW (A) : 60.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.23100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 60.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM EPPS PH 8.9, 200 MM MGCL2, REMARK 280 22.5% PEG3350. 2MG/ML 2P+1ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.46650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.81250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.80600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.81250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.46650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.80600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 GLN A 15 REMARK 465 LEU A 16 REMARK 465 LYS A 17 REMARK 465 TYR A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 MET A 36 REMARK 465 ALA A 37 REMARK 465 GLY A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 HIS A 43 REMARK 465 HIS A 44 REMARK 465 GLY A 45 REMARK 465 GLU A 46 REMARK 465 ASN A 47 REMARK 465 LEU A 48 REMARK 465 TYR A 49 REMARK 465 PHE A 50 REMARK 465 GLN A 51 REMARK 465 SER A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 LYS A 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 LYS A 342 O HOH A 914 1.52 REMARK 500 HH22 ARG A 89 O HOH A 604 1.56 REMARK 500 O HOH A 969 O HOH A 988 1.71 REMARK 500 O HOH A 858 O HOH A 996 1.94 REMARK 500 O HOH A 929 O HOH A 1062 1.95 REMARK 500 O HOH A 947 O HOH A 1028 2.04 REMARK 500 O HOH A 712 O HOH A 975 2.05 REMARK 500 O HOH A 806 O HOH A 927 2.08 REMARK 500 O HOH A 985 O HOH A 1053 2.12 REMARK 500 O HOH A 604 O HOH A 915 2.12 REMARK 500 O HOH A 940 O HOH A 1018 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 979 O HOH A 981 2555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 110 88.73 -157.27 REMARK 500 ASP A 387 -150.11 -145.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1068 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1070 DISTANCE = 7.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 675 O REMARK 620 2 HOH A 686 O 92.2 REMARK 620 3 HOH A 690 O 92.6 175.2 REMARK 620 4 HOH A 713 O 85.9 88.0 92.7 REMARK 620 5 HOH A 743 O 94.1 94.3 85.0 177.7 REMARK 620 6 HOH A 977 O 176.6 89.8 85.4 91.5 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 683 O REMARK 620 2 HOH A 700 O 107.1 REMARK 620 3 HOH A 738 O 97.9 77.6 REMARK 620 4 HOH A 970 O 169.3 79.5 74.9 REMARK 620 5 HOH A1002 O 98.3 98.4 163.7 88.9 REMARK 620 6 HOH A1007 O 90.3 162.5 98.6 83.1 80.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 32XL RELATED DB: PDB REMARK 900 PRODUCT BOUND REMARK 900 RELATED ID: 32YE RELATED DB: PDB REMARK 900 APO REMARK 900 RELATED ID: 32YH RELATED DB: PDB REMARK 900 SAME PUB DBREF 33AO A 14 425 PDB 33AO 33AO 14 425 SEQRES 1 A 412 MET GLN LEU LYS TYR LEU LEU PRO THR ALA ALA ALA GLY SEQRES 2 A 412 LEU LEU LEU LEU ALA ALA GLN PRO ALA MET ALA GLY HIS SEQRES 3 A 412 HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE GLN SER SEQRES 4 A 412 ASP ARG SER PHE VAL THR ARG ASP GLY ASP ARG LEU GLU SEQRES 5 A 412 VAL GLY GLY LYS ASN PHE ARG PHE ALA GLY THR ASN ASN SEQRES 6 A 412 TYR TYR LEU HIS TYR LYS SER ALA ALA MET ARG ASP ALA SEQRES 7 A 412 VAL LEU ASP LYS ALA ALA ASP SER GLY PHE ASP VAL VAL SEQRES 8 A 412 ARG THR TRP GLY TRP PHE ASP VAL GLY THR GLU GLU ASP SEQRES 9 A 412 PRO THR ALA GLY SER GLN GLU ASN THR TYR LEU GLN TYR SEQRES 10 A 412 TRP ASP GLY SER GLY HIS PRO LYS TYR ASN ASP GLY PRO SEQRES 11 A 412 ASN GLY LEU ALA LYS LEU ASP ALA VAL ILE ALA ARG ALA SEQRES 12 A 412 GLN GLN ASP GLY LEU ARG LEU VAL ILE PRO PHE THR ASN SEQRES 13 A 412 ASN TRP GLU ASP PHE GLY GLY MET ASP LYS TYR VAL GLU SEQRES 14 A 412 TRP ALA GLY GLY ASP HIS HIS ASP ASP PHE TYR THR ASP SEQRES 15 A 412 PRO THR ILE ARG GLY TRP TYR LYS ASP TYR ILE SER HIS SEQRES 16 A 412 LEU LEU ASN HIS THR ASN THR ILE THR GLY VAL LYS TYR SEQRES 17 A 412 LYS ASP ASP PRO THR ILE MET THR TRP GLU LEU ALA ASN SEQRES 18 A 412 GLU PRO ARG CYS VAL GLY SER GLY ASP TYR PRO ALA SER SEQRES 19 A 412 SER THR CYS THR SER ASP THR LEU THR SER TRP ALA ASP SEQRES 20 A 412 ASP VAL SER THR PHE ILE LYS SER ILE ASP ARG ASN HIS SEQRES 21 A 412 LEU VAL SER VAL GLY ASP GLU GLY PHE PHE CYS ASP GLN SEQRES 22 A 412 PRO SER SER THR ASP TRP THR HIS ASN CYS SER GLN GLY SEQRES 23 A 412 VAL ASP THR VAL ARG PHE ALA ALA LEU LYS ASN VAL ASP SEQRES 24 A 412 VAL MET SER TYR HIS LEU TYR PRO ASP ALA TRP GLY LYS SEQRES 25 A 412 ASP ALA ASP TRP GLY THR GLN TYR ILE VAL ASP HIS ALA SEQRES 26 A 412 THR ALA ALA LYS GLN VAL GLY LYS PRO VAL MET LEU GLY SEQRES 27 A 412 GLU PHE GLY LEU ARG ASP LYS ALA MET ARG ASN PRO VAL SEQRES 28 A 412 TYR LYS ILE TRP THR ASP THR ALA TYR GLN SER GLY THR SEQRES 29 A 412 THR GLY ALA LEU TYR TRP ILE LEU SER ASP ALA GLN ASP SEQRES 30 A 412 ASP GLY THR LEU TYR PRO ASP TYR ASP GLY PHE THR VAL SEQRES 31 A 412 TYR CYS PRO SER ALA VAL CYS THR THR LEU SER ASN SER SEQRES 32 A 412 ALA THR ARG PHE ARG SER GLY THR LYS HET EDO A 501 20 HET DMS A 502 10 HET MG A 503 1 HET MG A 504 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 DMS C2 H6 O S FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *470(H2 O) HELIX 1 AA1 SER A 85 SER A 99 1 15 HELIX 2 AA2 GLY A 145 ASP A 159 1 15 HELIX 3 AA3 GLY A 176 GLY A 185 1 10 HELIX 4 AA4 ASP A 190 ASP A 195 1 6 HELIX 5 AA5 ASP A 195 HIS A 212 1 18 HELIX 6 AA6 LYS A 220 ASP A 224 5 5 HELIX 7 AA7 THR A 251 ASP A 270 1 20 HELIX 8 AA8 ASP A 301 ALA A 307 1 7 HELIX 9 AA9 TYR A 319 GLY A 324 1 6 HELIX 10 AB1 ASP A 326 GLY A 345 1 20 HELIX 11 AB2 ASP A 357 SER A 375 1 19 HELIX 12 AB3 SER A 407 GLY A 423 1 17 SHEET 1 AA1 3 THR A 58 ASP A 60 0 SHEET 2 AA1 3 ARG A 63 VAL A 66 -1 O GLU A 65 N THR A 58 SHEET 3 AA1 3 LYS A 69 PHE A 71 -1 O PHE A 71 N LEU A 64 SHEET 1 AA2 8 LEU A 274 SER A 276 0 SHEET 2 AA2 8 ILE A 227 GLU A 231 1 N TRP A 230 O LEU A 274 SHEET 3 AA2 8 ARG A 162 PRO A 166 1 N LEU A 163 O MET A 228 SHEET 4 AA2 8 VAL A 103 ARG A 105 1 N VAL A 104 O ARG A 162 SHEET 5 AA2 8 PHE A 73 ASN A 77 1 N THR A 76 O ARG A 105 SHEET 6 AA2 8 GLY A 379 TYR A 382 1 O TYR A 382 N GLY A 75 SHEET 7 AA2 8 VAL A 348 PHE A 353 1 N LEU A 350 O LEU A 381 SHEET 8 AA2 8 MET A 314 LEU A 318 1 N TYR A 316 O GLY A 351 SHEET 1 AA3 2 GLN A 129 TRP A 131 0 SHEET 2 AA3 2 PRO A 137 TYR A 139 -1 O LYS A 138 N TYR A 130 SSBOND 1 CYS A 238 CYS A 250 1555 1555 2.13 SSBOND 2 CYS A 284 CYS A 296 1555 1555 2.12 SSBOND 3 CYS A 405 CYS A 410 1555 1555 2.08 LINK MG MG A 503 O HOH A 675 1555 2555 2.07 LINK MG MG A 503 O HOH A 686 1555 2555 2.03 LINK MG MG A 503 O HOH A 690 1555 1555 2.21 LINK MG MG A 503 O HOH A 713 1555 2555 2.21 LINK MG MG A 503 O HOH A 743 1555 2555 2.06 LINK MG MG A 503 O HOH A 977 1555 2555 2.01 LINK MG MG A 504 O HOH A 683 1555 1555 1.88 LINK MG MG A 504 O HOH A 700 1555 1555 2.22 LINK MG MG A 504 O HOH A 738 1555 1555 2.12 LINK MG MG A 504 O HOH A 970 1555 1555 1.94 LINK MG MG A 504 O HOH A1002 1555 1555 2.21 LINK MG MG A 504 O HOH A1007 1555 2555 2.05 CISPEP 1 TRP A 383 ILE A 384 0 16.33 CISPEP 2 CYS A 405 PRO A 406 0 -6.11 CRYST1 48.933 75.612 99.625 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020436 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010038 0.00000 CONECT 2936 3080 CONECT 3080 2936 CONECT 3614 3784 CONECT 3784 3614 CONECT 5518 5584 CONECT 5584 5518 CONECT 5822 5824 5826 5830 5832 CONECT 5823 5825 5827 5831 5833 CONECT 5824 5822 5834 CONECT 5825 5823 5835 CONECT 5826 5822 5828 5836 5838 CONECT 5827 5823 5829 5837 5839 CONECT 5828 5826 5840 CONECT 5829 5827 5841 CONECT 5830 5822 CONECT 5831 5823 CONECT 5832 5822 CONECT 5833 5823 CONECT 5834 5824 CONECT 5835 5825 CONECT 5836 5826 CONECT 5837 5827 CONECT 5838 5826 CONECT 5839 5827 CONECT 5840 5828 CONECT 5841 5829 CONECT 5842 5843 5844 5845 CONECT 5843 5842 CONECT 5844 5842 5846 5847 5848 CONECT 5845 5842 5849 5850 5851 CONECT 5846 5844 CONECT 5847 5844 CONECT 5848 5844 CONECT 5849 5845 CONECT 5850 5845 CONECT 5851 5845 CONECT 5852 5945 CONECT 5853 5938 5955 5993 6225 CONECT 5853 6257 CONECT 5938 5853 CONECT 5945 5852 CONECT 5955 5853 CONECT 5993 5853 CONECT 6225 5853 CONECT 6257 5853 MASTER 410 0 4 12 13 0 0 6 3396 1 45 32 END