data_343D # _entry.id 343D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 343D pdb_0000343d 10.2210/pdb343d/pdb RCSB ADFB97 ? ? WWPDB D_1000178812 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-07-21 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 343D _pdbx_database_status.recvd_initial_deposition_date 1997-06-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.M.' 1 'Eichman, B.F.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.M.' 1 ? primary 'Eichman, B.F.' 2 ? primary 'Ho, P.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(5CM)P*TP*AP*GP*C)-3') ; 1823.244 8 ? ? ? ? 2 water nat water 18.015 172 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DT)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTAGC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 5CM n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 5CM 2 2 2 5CM +C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 5CM 2 8 8 5CM +C B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DC 6 12 12 DC C B . n C 1 1 DG 1 13 13 DG G C . n C 1 2 5CM 2 14 14 5CM +C C . n C 1 3 DT 3 15 15 DT T C . n C 1 4 DA 4 16 16 DA A C . n C 1 5 DG 5 17 17 DG G C . n C 1 6 DC 6 18 18 DC C C . n D 1 1 DG 1 19 19 DG G D . n D 1 2 5CM 2 20 20 5CM +C D . n D 1 3 DT 3 21 21 DT T D . n D 1 4 DA 4 22 22 DA A D . n D 1 5 DG 5 23 23 DG G D . n D 1 6 DC 6 24 24 DC C D . n E 1 1 DG 1 25 25 DG G E . n E 1 2 5CM 2 26 26 5CM +C E . n E 1 3 DT 3 27 27 DT T E . n E 1 4 DA 4 28 28 DA A E . n E 1 5 DG 5 29 29 DG G E . n E 1 6 DC 6 30 30 DC C E . n F 1 1 DG 1 31 31 DG G F . n F 1 2 5CM 2 32 32 5CM +C F . n F 1 3 DT 3 33 33 DT T F . n F 1 4 DA 4 34 34 DA A F . n F 1 5 DG 5 35 35 DG G F . n F 1 6 DC 6 36 36 DC C F . n G 1 1 DG 1 37 37 DG G G . n G 1 2 5CM 2 38 38 5CM +C G . n G 1 3 DT 3 39 39 DT T G . n G 1 4 DA 4 40 40 DA A G . n G 1 5 DG 5 41 41 DG G G . n G 1 6 DC 6 42 42 DC C G . n H 1 1 DG 1 43 43 DG G H . n H 1 2 5CM 2 44 44 5CM +C H . n H 1 3 DT 3 45 45 DT T H . n H 1 4 DA 4 46 46 DA A H . n H 1 5 DG 5 47 47 DG G H . n H 1 6 DC 6 48 48 DC C H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HOH 1 49 49 HOH HOH A . I 2 HOH 2 51 51 HOH HOH A . I 2 HOH 3 54 54 HOH HOH A . I 2 HOH 4 80 80 HOH HOH A . I 2 HOH 5 105 105 HOH HOH A . I 2 HOH 6 106 106 HOH HOH A . I 2 HOH 7 129 129 HOH HOH A . I 2 HOH 8 142 142 HOH HOH A . I 2 HOH 9 143 143 HOH HOH A . I 2 HOH 10 144 144 HOH HOH A . I 2 HOH 11 147 147 HOH HOH A . I 2 HOH 12 148 148 HOH HOH A . I 2 HOH 13 170 170 HOH HOH A . I 2 HOH 14 171 171 HOH HOH A . I 2 HOH 15 172 172 HOH HOH A . I 2 HOH 16 173 173 HOH HOH A . I 2 HOH 17 180 180 HOH HOH A . I 2 HOH 18 182 182 HOH HOH A . I 2 HOH 19 183 183 HOH HOH A . I 2 HOH 20 213 213 HOH HOH A . J 2 HOH 1 50 50 HOH HOH B . J 2 HOH 2 52 52 HOH HOH B . J 2 HOH 3 73 73 HOH HOH B . J 2 HOH 4 85 85 HOH HOH B . J 2 HOH 5 93 93 HOH HOH B . J 2 HOH 6 97 97 HOH HOH B . J 2 HOH 7 98 98 HOH HOH B . J 2 HOH 8 108 108 HOH HOH B . J 2 HOH 9 123 123 HOH HOH B . J 2 HOH 10 124 124 HOH HOH B . J 2 HOH 11 156 156 HOH HOH B . J 2 HOH 12 162 162 HOH HOH B . J 2 HOH 13 176 176 HOH HOH B . J 2 HOH 14 181 181 HOH HOH B . J 2 HOH 15 190 190 HOH HOH B . J 2 HOH 16 191 191 HOH HOH B . J 2 HOH 17 193 193 HOH HOH B . J 2 HOH 18 199 199 HOH HOH B . J 2 HOH 19 205 205 HOH HOH B . J 2 HOH 20 210 210 HOH HOH B . J 2 HOH 21 217 217 HOH HOH B . J 2 HOH 22 219 219 HOH HOH B . K 2 HOH 1 62 62 HOH HOH C . K 2 HOH 2 70 70 HOH HOH C . K 2 HOH 3 75 75 HOH HOH C . K 2 HOH 4 76 76 HOH HOH C . K 2 HOH 5 94 94 HOH HOH C . K 2 HOH 6 103 103 HOH HOH C . K 2 HOH 7 104 104 HOH HOH C . K 2 HOH 8 115 115 HOH HOH C . K 2 HOH 9 120 120 HOH HOH C . K 2 HOH 10 126 126 HOH HOH C . K 2 HOH 11 135 135 HOH HOH C . K 2 HOH 12 136 136 HOH HOH C . K 2 HOH 13 184 184 HOH HOH C . K 2 HOH 14 204 204 HOH HOH C . K 2 HOH 15 208 208 HOH HOH C . L 2 HOH 1 61 61 HOH HOH D . L 2 HOH 2 63 63 HOH HOH D . L 2 HOH 3 107 107 HOH HOH D . L 2 HOH 4 110 110 HOH HOH D . L 2 HOH 5 118 118 HOH HOH D . L 2 HOH 6 121 121 HOH HOH D . L 2 HOH 7 122 122 HOH HOH D . L 2 HOH 8 127 127 HOH HOH D . L 2 HOH 9 139 139 HOH HOH D . L 2 HOH 10 145 145 HOH HOH D . L 2 HOH 11 146 146 HOH HOH D . L 2 HOH 12 153 153 HOH HOH D . L 2 HOH 13 154 154 HOH HOH D . L 2 HOH 14 155 155 HOH HOH D . L 2 HOH 15 164 164 HOH HOH D . L 2 HOH 16 185 185 HOH HOH D . L 2 HOH 17 187 187 HOH HOH D . L 2 HOH 18 194 194 HOH HOH D . L 2 HOH 19 196 196 HOH HOH D . L 2 HOH 20 206 206 HOH HOH D . L 2 HOH 21 211 211 HOH HOH D . L 2 HOH 22 214 214 HOH HOH D . L 2 HOH 23 218 218 HOH HOH D . L 2 HOH 24 220 220 HOH HOH D . M 2 HOH 1 53 53 HOH HOH E . M 2 HOH 2 56 56 HOH HOH E . M 2 HOH 3 57 57 HOH HOH E . M 2 HOH 4 59 59 HOH HOH E . M 2 HOH 5 74 74 HOH HOH E . M 2 HOH 6 78 78 HOH HOH E . M 2 HOH 7 92 92 HOH HOH E . M 2 HOH 8 99 99 HOH HOH E . M 2 HOH 9 109 109 HOH HOH E . M 2 HOH 10 116 116 HOH HOH E . M 2 HOH 11 132 132 HOH HOH E . M 2 HOH 12 133 133 HOH HOH E . M 2 HOH 13 149 149 HOH HOH E . M 2 HOH 14 150 150 HOH HOH E . M 2 HOH 15 151 151 HOH HOH E . M 2 HOH 16 152 152 HOH HOH E . M 2 HOH 17 174 174 HOH HOH E . M 2 HOH 18 186 186 HOH HOH E . M 2 HOH 19 189 189 HOH HOH E . M 2 HOH 20 195 195 HOH HOH E . M 2 HOH 21 202 202 HOH HOH E . M 2 HOH 22 215 215 HOH HOH E . N 2 HOH 1 55 55 HOH HOH F . N 2 HOH 2 58 58 HOH HOH F . N 2 HOH 3 60 60 HOH HOH F . N 2 HOH 4 72 72 HOH HOH F . N 2 HOH 5 84 84 HOH HOH F . N 2 HOH 6 89 89 HOH HOH F . N 2 HOH 7 90 90 HOH HOH F . N 2 HOH 8 91 91 HOH HOH F . N 2 HOH 9 95 95 HOH HOH F . N 2 HOH 10 96 96 HOH HOH F . N 2 HOH 11 100 100 HOH HOH F . N 2 HOH 12 101 101 HOH HOH F . N 2 HOH 13 102 102 HOH HOH F . N 2 HOH 14 111 111 HOH HOH F . N 2 HOH 15 125 125 HOH HOH F . N 2 HOH 16 128 128 HOH HOH F . N 2 HOH 17 137 137 HOH HOH F . N 2 HOH 18 138 138 HOH HOH F . N 2 HOH 19 140 140 HOH HOH F . N 2 HOH 20 163 163 HOH HOH F . N 2 HOH 21 175 175 HOH HOH F . N 2 HOH 22 188 188 HOH HOH F . N 2 HOH 23 192 192 HOH HOH F . N 2 HOH 24 203 203 HOH HOH F . N 2 HOH 25 207 207 HOH HOH F . N 2 HOH 26 209 209 HOH HOH F . N 2 HOH 27 212 212 HOH HOH F . N 2 HOH 28 216 216 HOH HOH F . O 2 HOH 1 64 64 HOH HOH G . O 2 HOH 2 65 65 HOH HOH G . O 2 HOH 3 67 67 HOH HOH G . O 2 HOH 4 68 68 HOH HOH G . O 2 HOH 5 71 71 HOH HOH G . O 2 HOH 6 79 79 HOH HOH G . O 2 HOH 7 82 82 HOH HOH G . O 2 HOH 8 83 83 HOH HOH G . O 2 HOH 9 88 88 HOH HOH G . O 2 HOH 10 112 112 HOH HOH G . O 2 HOH 11 113 113 HOH HOH G . O 2 HOH 12 114 114 HOH HOH G . O 2 HOH 13 117 117 HOH HOH G . O 2 HOH 14 119 119 HOH HOH G . O 2 HOH 15 141 141 HOH HOH G . O 2 HOH 16 157 157 HOH HOH G . O 2 HOH 17 158 158 HOH HOH G . O 2 HOH 18 159 159 HOH HOH G . O 2 HOH 19 160 160 HOH HOH G . O 2 HOH 20 161 161 HOH HOH G . O 2 HOH 21 165 165 HOH HOH G . O 2 HOH 22 166 166 HOH HOH G . O 2 HOH 23 167 167 HOH HOH G . O 2 HOH 24 179 179 HOH HOH G . P 2 HOH 1 66 66 HOH HOH H . P 2 HOH 2 69 69 HOH HOH H . P 2 HOH 3 77 77 HOH HOH H . P 2 HOH 4 81 81 HOH HOH H . P 2 HOH 5 86 86 HOH HOH H . P 2 HOH 6 87 87 HOH HOH H . P 2 HOH 7 130 130 HOH HOH H . P 2 HOH 8 131 131 HOH HOH H . P 2 HOH 9 134 134 HOH HOH H . P 2 HOH 10 168 168 HOH HOH H . P 2 HOH 11 169 169 HOH HOH H . P 2 HOH 12 177 177 HOH HOH H . P 2 HOH 13 178 178 HOH HOH H . P 2 HOH 14 197 197 HOH HOH H . P 2 HOH 15 198 198 HOH HOH H . P 2 HOH 16 200 200 HOH HOH H . P 2 HOH 17 201 201 HOH HOH H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XTALVIEW refinement . ? 1 X-PLOR 'model building' . ? 2 X-PLOR refinement 3.1 ? 3 SAINT 'data reduction' . ? 4 SAINT 'data scaling' . ? 5 X-PLOR phasing . ? 6 # _cell.entry_id 343D _cell.length_a 23.880 _cell.length_b 33.820 _cell.length_c 40.120 _cell.angle_alpha 85.05 _cell.angle_beta 82.91 _cell.angle_gamma 74.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 343D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 343D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.32 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range . # _exptl_crystal_grow_comp.crystal_id 1 _exptl_crystal_grow_comp.id 1 _exptl_crystal_grow_comp.sol_id 1 _exptl_crystal_grow_comp.name WATER _exptl_crystal_grow_comp.volume ? _exptl_crystal_grow_comp.conc ? _exptl_crystal_grow_comp.details ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date 1996-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 343D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 8901 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.500 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 343D _refine.ls_number_reflns_obs 6307 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.286 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 14.34 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 960 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 172 _refine_hist.number_atoms_total 1140 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.64 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file GMTAGC.PAR _pdbx_xplor_file.topol_file GMTAGC.TOP _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 343D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 343D _struct.title 'STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 343D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 343D _struct_ref.pdbx_db_accession 343D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 343D A 1 ? 6 ? 343D 1 ? 6 ? 1 6 2 1 343D B 1 ? 6 ? 343D 7 ? 12 ? 7 12 3 1 343D C 1 ? 6 ? 343D 13 ? 18 ? 13 18 4 1 343D D 1 ? 6 ? 343D 19 ? 24 ? 19 24 5 1 343D E 1 ? 6 ? 343D 25 ? 30 ? 25 30 6 1 343D F 1 ? 6 ? 343D 31 ? 36 ? 31 36 7 1 343D G 1 ? 6 ? 343D 37 ? 42 ? 37 42 8 1 343D H 1 ? 6 ? 343D 43 ? 48 ? 43 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? 4 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DT 3 P ? ? A 5CM 2 A DT 3 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B DG 1 "O3'" ? ? ? 1_555 B 5CM 2 P ? ? B DG 7 B 5CM 8 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale4 covale both ? B 5CM 2 "O3'" ? ? ? 1_555 B DT 3 P ? ? B 5CM 8 B DT 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? C DG 1 "O3'" ? ? ? 1_555 C 5CM 2 P ? ? C DG 13 C 5CM 14 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale6 covale both ? C 5CM 2 "O3'" ? ? ? 1_555 C DT 3 P ? ? C 5CM 14 C DT 15 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale7 covale both ? D DG 1 "O3'" ? ? ? 1_555 D 5CM 2 P ? ? D DG 19 D 5CM 20 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale8 covale both ? D 5CM 2 "O3'" ? ? ? 1_555 D DT 3 P ? ? D 5CM 20 D DT 21 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale9 covale both ? E DG 1 "O3'" ? ? ? 1_555 E 5CM 2 P ? ? E DG 25 E 5CM 26 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale10 covale both ? E 5CM 2 "O3'" ? ? ? 1_555 E DT 3 P ? ? E 5CM 26 E DT 27 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale11 covale both ? F DG 1 "O3'" ? ? ? 1_555 F 5CM 2 P ? ? F DG 31 F 5CM 32 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale12 covale both ? F 5CM 2 "O3'" ? ? ? 1_555 F DT 3 P ? ? F 5CM 32 F DT 33 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale13 covale both ? G DG 1 "O3'" ? ? ? 1_555 G 5CM 2 P ? ? G DG 37 G 5CM 38 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale14 covale both ? G 5CM 2 "O3'" ? ? ? 1_555 G DT 3 P ? ? G 5CM 38 G DT 39 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale15 covale both ? H DG 1 "O3'" ? ? ? 1_555 H 5CM 2 P ? ? H DG 43 H 5CM 44 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale16 covale both ? H 5CM 2 "O3'" ? ? ? 1_555 H DT 3 P ? ? H 5CM 44 H DT 45 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B 5CM 2 N3 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B 5CM 2 O2 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B 5CM 2 N4 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 13 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C 5CM 2 N3 ? ? ? 1_555 D DG 5 N1 ? ? C 5CM 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C 5CM 2 N4 ? ? ? 1_555 D DG 5 O6 ? ? C 5CM 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C 5CM 2 O2 ? ? ? 1_555 D DG 5 N2 ? ? C 5CM 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D 5CM 2 N3 ? ? C DG 17 D 5CM 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D 5CM 2 O2 ? ? C DG 17 D 5CM 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D 5CM 2 N4 ? ? C DG 17 D 5CM 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 18 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 6 N3 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 6 O2 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 6 N4 ? ? E DG 25 F DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E 5CM 2 N3 ? ? ? 1_555 F DG 5 N1 ? ? E 5CM 26 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E 5CM 2 N4 ? ? ? 1_555 F DG 5 O6 ? ? E 5CM 26 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E 5CM 2 O2 ? ? ? 1_555 F DG 5 N2 ? ? E 5CM 26 F DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 27 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 27 F DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 3 N3 ? ? E DA 28 F DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 3 O4 ? ? E DA 28 F DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F 5CM 2 N3 ? ? E DG 29 F 5CM 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F 5CM 2 O2 ? ? E DG 29 F 5CM 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F 5CM 2 N4 ? ? E DG 29 F 5CM 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DC 6 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DC 6 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DC 6 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 30 F DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? G DG 1 N1 ? ? ? 1_555 H DC 6 N3 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? G DG 1 N2 ? ? ? 1_555 H DC 6 O2 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? G DG 1 O6 ? ? ? 1_555 H DC 6 N4 ? ? G DG 37 H DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? G 5CM 2 N3 ? ? ? 1_555 H DG 5 N1 ? ? G 5CM 38 H DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? G 5CM 2 N4 ? ? ? 1_555 H DG 5 O6 ? ? G 5CM 38 H DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? G 5CM 2 O2 ? ? ? 1_555 H DG 5 N2 ? ? G 5CM 38 H DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? G DT 3 N3 ? ? ? 1_555 H DA 4 N1 ? ? G DT 39 H DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? G DT 3 O4 ? ? ? 1_555 H DA 4 N6 ? ? G DT 39 H DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? G DA 4 N1 ? ? ? 1_555 H DT 3 N3 ? ? G DA 40 H DT 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? G DA 4 N6 ? ? ? 1_555 H DT 3 O4 ? ? G DA 40 H DT 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? G DG 5 N1 ? ? ? 1_555 H 5CM 2 N3 ? ? G DG 41 H 5CM 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? G DG 5 N2 ? ? ? 1_555 H 5CM 2 O2 ? ? G DG 41 H 5CM 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? G DG 5 O6 ? ? ? 1_555 H 5CM 2 N4 ? ? G DG 41 H 5CM 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? G DC 6 N3 ? ? ? 1_555 H DG 1 N1 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? G DC 6 N4 ? ? ? 1_555 H DG 1 O6 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? G DC 6 O2 ? ? ? 1_555 H DG 1 N2 ? ? G DC 42 H DG 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 110.29 108.30 1.99 0.30 N 2 1 "O5'" B DG 11 ? ? P B DG 11 ? ? OP2 B DG 11 ? ? 98.66 105.70 -7.04 0.90 N 3 1 "O3'" B DG 11 ? ? P B DC 12 ? ? OP2 B DC 12 ? ? 117.46 110.50 6.96 1.10 Y 4 1 "O4'" E DA 28 ? ? "C4'" E DA 28 ? ? "C3'" E DA 28 ? ? 101.59 104.50 -2.91 0.40 N 5 1 "C3'" F DA 34 ? ? "C2'" F DA 34 ? ? "C1'" F DA 34 ? ? 97.49 102.40 -4.91 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA B 10 ? ? 0.056 'SIDE CHAIN' 2 1 DT E 27 ? ? 0.070 'SIDE CHAIN' 3 1 DA F 34 ? ? 0.052 'SIDE CHAIN' 4 1 DT H 45 ? ? 0.063 'SIDE CHAIN' 5 1 DA H 46 ? ? 0.054 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 2 A 5CM 2 ? DC ? 2 B 5CM 2 B 5CM 8 ? DC ? 3 C 5CM 2 C 5CM 14 ? DC ? 4 D 5CM 2 D 5CM 20 ? DC ? 5 E 5CM 2 E 5CM 26 ? DC ? 6 F 5CM 2 F 5CM 32 ? DC ? 7 G 5CM 2 G 5CM 38 ? DC ? 8 H 5CM 2 H 5CM 44 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DT OP3 P sing N N 151 DT OP3 HOP3 sing N N 152 DT P OP1 doub N N 153 DT P OP2 sing N N 154 DT P "O5'" sing N N 155 DT OP2 HOP2 sing N N 156 DT "O5'" "C5'" sing N N 157 DT "C5'" "C4'" sing N N 158 DT "C5'" "H5'" sing N N 159 DT "C5'" "H5''" sing N N 160 DT "C4'" "O4'" sing N N 161 DT "C4'" "C3'" sing N N 162 DT "C4'" "H4'" sing N N 163 DT "O4'" "C1'" sing N N 164 DT "C3'" "O3'" sing N N 165 DT "C3'" "C2'" sing N N 166 DT "C3'" "H3'" sing N N 167 DT "O3'" "HO3'" sing N N 168 DT "C2'" "C1'" sing N N 169 DT "C2'" "H2'" sing N N 170 DT "C2'" "H2''" sing N N 171 DT "C1'" N1 sing N N 172 DT "C1'" "H1'" sing N N 173 DT N1 C2 sing N N 174 DT N1 C6 sing N N 175 DT C2 O2 doub N N 176 DT C2 N3 sing N N 177 DT N3 C4 sing N N 178 DT N3 H3 sing N N 179 DT C4 O4 doub N N 180 DT C4 C5 sing N N 181 DT C5 C7 sing N N 182 DT C5 C6 doub N N 183 DT C7 H71 sing N N 184 DT C7 H72 sing N N 185 DT C7 H73 sing N N 186 DT C6 H6 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 343D 'double helix' 343D 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 -0.435 -0.250 0.223 -1.190 -2.311 2.526 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A 5CM 2 1_555 B DG 5 1_555 0.059 -0.018 0.219 -0.196 -13.790 2.990 2 A_5CM2:DG11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 0.035 -0.224 0.044 -8.271 -10.462 1.798 3 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.063 -0.104 -0.372 -10.157 -15.921 6.576 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DG 5 1_555 B 5CM 2 1_555 0.200 -0.021 -0.824 -8.107 -5.586 3.852 5 A_DG5:5CM8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 1 1_555 0.202 0.031 -0.774 16.510 -3.532 -0.155 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 1 C DG 1 1_555 D DC 6 1_555 -0.545 -0.375 0.312 1.777 -9.230 2.400 7 C_DG13:DC24_D C 13 ? D 24 ? 19 1 1 C 5CM 2 1_555 D DG 5 1_555 0.558 -0.314 0.297 -4.013 -13.555 0.580 8 C_5CM14:DG23_D C 14 ? D 23 ? 19 1 1 C DT 3 1_555 D DA 4 1_555 0.024 -0.192 0.169 -3.193 -11.515 9.692 9 C_DT15:DA22_D C 15 ? D 22 ? 20 1 1 C DA 4 1_555 D DT 3 1_555 -0.216 0.116 0.070 -4.235 -15.661 5.384 10 C_DA16:DT21_D C 16 ? D 21 ? 20 1 1 C DG 5 1_555 D 5CM 2 1_555 -0.167 -0.183 -0.314 0.928 -1.933 -0.278 11 C_DG17:5CM20_D C 17 ? D 20 ? 19 1 1 C DC 6 1_555 D DG 1 1_555 0.407 -0.081 -0.792 15.164 -2.964 -2.560 12 C_DC18:DG19_D C 18 ? D 19 ? 19 1 1 E DG 1 1_555 F DC 6 1_555 -0.159 -0.233 0.351 1.147 -6.290 2.507 13 E_DG25:DC36_F E 25 ? F 36 ? 19 1 1 E 5CM 2 1_555 F DG 5 1_555 0.600 -0.125 0.381 -0.269 -16.324 3.647 14 E_5CM26:DG35_F E 26 ? F 35 ? 19 1 1 E DT 3 1_555 F DA 4 1_555 0.318 -0.178 0.074 -6.056 -9.862 3.997 15 E_DT27:DA34_F E 27 ? F 34 ? 20 1 1 E DA 4 1_555 F DT 3 1_555 -0.227 -0.065 -0.159 -9.003 -16.457 4.408 16 E_DA28:DT33_F E 28 ? F 33 ? 20 1 1 E DG 5 1_555 F 5CM 2 1_555 -0.281 -0.006 -0.322 -2.958 -6.100 0.306 17 E_DG29:5CM32_F E 29 ? F 32 ? 19 1 1 E DC 6 1_555 F DG 1 1_555 0.247 -0.060 -0.698 15.820 -5.143 -4.297 18 E_DC30:DG31_F E 30 ? F 31 ? 19 1 1 G DG 1 1_555 H DC 6 1_555 -0.544 -0.098 0.298 -0.350 -6.815 6.989 19 G_DG37:DC48_H G 37 ? H 48 ? 19 1 1 G 5CM 2 1_555 H DG 5 1_555 0.235 -0.146 0.122 -2.891 -12.920 2.276 20 G_5CM38:DG47_H G 38 ? H 47 ? 19 1 1 G DT 3 1_555 H DA 4 1_555 0.160 -0.250 -0.258 -9.438 -7.301 4.053 21 G_DT39:DA46_H G 39 ? H 46 ? 20 1 1 G DA 4 1_555 H DT 3 1_555 0.034 0.059 -0.577 -11.974 -13.312 6.645 22 G_DA40:DT45_H G 40 ? H 45 ? 20 1 1 G DG 5 1_555 H 5CM 2 1_555 0.098 -0.010 -0.792 -3.786 -4.747 -0.847 23 G_DG41:5CM44_H G 41 ? H 44 ? 19 1 1 G DC 6 1_555 H DG 1 1_555 0.205 -0.061 -1.048 12.485 -1.831 -1.233 24 G_DC42:DG43_H G 42 ? H 43 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A 5CM 2 1_555 B DG 5 1_555 -0.504 -1.896 3.312 -1.140 2.313 33.071 -3.709 0.692 3.191 4.056 1.999 33.168 1 AA_DG15CM2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A 5CM 2 1_555 B DG 5 1_555 A DT 3 1_555 B DA 4 1_555 0.603 -0.847 3.418 4.995 6.537 38.366 -2.072 -0.280 3.285 9.810 -7.496 39.206 2 AA_5CM2DT3:DA10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 0.241 -1.211 3.433 2.822 18.936 25.648 -5.444 0.045 2.086 36.821 -5.488 31.909 3 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DG 5 1_555 B 5CM 2 1_555 0.378 -1.533 3.492 3.420 8.059 26.505 -5.118 0.038 2.932 16.997 -7.214 27.888 4 AA_DA4DG5:5CM8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B 5CM 2 1_555 A DC 6 1_555 B DG 1 1_555 -0.376 -1.149 2.943 0.555 1.166 26.295 -2.800 0.958 2.881 2.561 -1.220 26.326 5 AA_DG5DC6:DG75CM8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 C DG 1 1_555 D DC 6 1_555 C 5CM 2 1_555 D DG 5 1_555 -0.814 -1.875 3.413 -0.562 3.402 37.873 -3.320 1.177 3.250 5.228 0.864 38.024 6 CC_DG135CM14:DG23DC24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 C 5CM 2 1_555 D DG 5 1_555 C DT 3 1_555 D DA 4 1_555 0.631 -1.019 3.186 3.329 2.675 31.237 -2.360 -0.560 3.139 4.939 -6.146 31.520 7 CC_5CM14DT15:DA22DG23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 C DT 3 1_555 D DA 4 1_555 C DA 4 1_555 D DT 3 1_555 0.202 -1.352 3.221 -0.139 22.485 27.717 -5.008 -0.348 1.688 39.689 0.245 35.551 8 CC_DT15DA16:DT21DA22_DD C 15 ? D 22 ? C 16 ? D 21 ? 1 C DA 4 1_555 D DT 3 1_555 C DG 5 1_555 D 5CM 2 1_555 0.346 -1.831 3.369 3.871 5.929 25.665 -5.497 0.239 2.900 13.034 -8.509 26.608 9 CC_DA16DG17:5CM20DT21_DD C 16 ? D 21 ? C 17 ? D 20 ? 1 C DG 5 1_555 D 5CM 2 1_555 C DC 6 1_555 D DG 1 1_555 -0.320 -1.263 3.276 2.410 -1.035 29.195 -2.271 1.155 3.281 -2.048 -4.769 29.310 10 CC_DG17DC18:DG195CM20_DD C 17 ? D 20 ? C 18 ? D 19 ? 1 E DG 1 1_555 F DC 6 1_555 E 5CM 2 1_555 F DG 5 1_555 -0.695 -1.914 3.346 -1.869 1.411 35.213 -3.369 0.865 3.301 2.329 3.085 35.288 11 EE_DG255CM26:DG35DC36_FF E 25 ? F 36 ? E 26 ? F 35 ? 1 E 5CM 2 1_555 F DG 5 1_555 E DT 3 1_555 F DA 4 1_555 0.662 -0.920 3.380 5.393 2.776 34.734 -1.948 -0.263 3.360 4.606 -8.949 35.243 12 EE_5CM26DT27:DA34DG35_FF E 26 ? F 35 ? E 27 ? F 34 ? 1 E DT 3 1_555 F DA 4 1_555 E DA 4 1_555 F DT 3 1_555 0.207 -1.265 3.340 2.372 20.049 24.614 -5.619 0.012 1.832 39.593 -4.684 31.736 13 EE_DT27DA28:DT33DA34_FF E 27 ? F 34 ? E 28 ? F 33 ? 1 E DA 4 1_555 F DT 3 1_555 E DG 5 1_555 F 5CM 2 1_555 0.481 -1.941 3.281 1.737 8.582 24.841 -6.361 -0.633 2.508 19.204 -3.887 26.316 14 EE_DA28DG29:5CM32DT33_FF E 28 ? F 33 ? E 29 ? F 32 ? 1 E DG 5 1_555 F 5CM 2 1_555 E DC 6 1_555 F DG 1 1_555 -0.294 -1.243 3.103 2.792 -1.450 30.619 -2.072 1.074 3.119 -2.737 -5.269 30.777 15 EE_DG29DC30:DG315CM32_FF E 29 ? F 32 ? E 30 ? F 31 ? 1 G DG 1 1_555 H DC 6 1_555 G 5CM 2 1_555 H DG 5 1_555 -0.735 -1.678 3.461 0.294 -0.321 35.515 -2.700 1.251 3.470 -0.526 -0.482 35.518 16 GG_DG375CM38:DG47DC48_HH G 37 ? H 48 ? G 38 ? H 47 ? 1 G 5CM 2 1_555 H DG 5 1_555 G DT 3 1_555 H DA 4 1_555 0.649 -0.866 3.389 5.185 7.302 36.070 -2.360 -0.310 3.219 11.575 -8.218 37.129 17 GG_5CM38DT39:DA46DG47_HH G 38 ? H 47 ? G 39 ? H 46 ? 1 G DT 3 1_555 H DA 4 1_555 G DA 4 1_555 H DT 3 1_555 0.133 -1.023 3.483 2.458 21.929 23.982 -5.514 0.175 1.917 42.914 -4.810 32.479 18 GG_DT39DA40:DT45DA46_HH G 39 ? H 46 ? G 40 ? H 45 ? 1 G DA 4 1_555 H DT 3 1_555 G DG 5 1_555 H 5CM 2 1_555 0.335 -1.684 3.427 0.860 7.209 26.014 -5.411 -0.503 2.873 15.630 -1.864 26.991 19 GG_DA40DG41:5CM44DT45_HH G 40 ? H 45 ? G 41 ? H 44 ? 1 G DG 5 1_555 H 5CM 2 1_555 G DC 6 1_555 H DG 1 1_555 -0.173 -1.201 3.158 2.930 -2.613 27.461 -1.887 1.054 3.221 -5.469 -6.132 27.735 20 GG_DG41DC42:DG435CM44_HH G 41 ? H 44 ? G 42 ? H 43 ? # _atom_sites.entry_id 343D _atom_sites.fract_transf_matrix[1][1] 0.041876 _atom_sites.fract_transf_matrix[1][2] -0.011276 _atom_sites.fract_transf_matrix[1][3] -0.004578 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030621 _atom_sites.fract_transf_matrix[2][3] -0.001735 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025158 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_