HEADER METAL BINDING PROTEIN 03-SEP-26 34AF TITLE CU(II)-BOUND ALPHA-SYNUCLEIN MONOMER COMPLEX - LOCAL STRUCTURE OF N- TITLE 2 TERMINAL BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-SYNUCLEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-A BETA COMPONENT OF AD AMYLOID,NON-A4 COMPONENT OF COMPND 5 AMYLOID PRECURSOR,NACP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNCA, NACP, PARK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-SYNUCLEIN, AMYLOID, COPPER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR L.ADAM,A.GIACHETTI,M.PICCIOLI,S.CIOFI-BAFFONI,A.ABELEIN REVDAT 1 16-SEP-26 34AF 0 JRNL AUTH L.ADAM,A.GIACHETTI,M.PICCIOLI,S.CIOFI-BAFFONI,A.ABELEIN JRNL TITL CU(II)-BOUND ALPHA-SYNUCLEIN MONOMER COMPLEX - LOCAL JRNL TITL 2 STRUCTURE OF N-TERMINAL BINDING SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 20 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AMBER REMARK 4 REMARK 4 34AF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-26. REMARK 100 THE DEPOSITION ID IS D_1292160185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 281 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 90 UM [U-13C; U-15N] ALPHA REMARK 210 -SYNUCLEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % V/V SODIUM REMARK 210 AZIDE, 10 % V/V D2O, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.15, POKY, NMRPIPE, REMARK 210 TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-5 REMARK 465 RES C SSSEQI REMARK 465 VAL A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 THR A 33 REMARK 465 LYS A 34 REMARK 465 GLU A 35 REMARK 465 GLY A 36 REMARK 465 VAL A 37 REMARK 465 LEU A 38 REMARK 465 TYR A 39 REMARK 465 VAL A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 THR A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 GLY A 47 REMARK 465 VAL A 48 REMARK 465 VAL A 49 REMARK 465 HIS A 50 REMARK 465 GLY A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 53 REMARK 465 THR A 54 REMARK 465 VAL A 55 REMARK 465 ALA A 56 REMARK 465 GLU A 57 REMARK 465 LYS A 58 REMARK 465 THR A 59 REMARK 465 LYS A 60 REMARK 465 GLU A 61 REMARK 465 GLN A 62 REMARK 465 VAL A 63 REMARK 465 THR A 64 REMARK 465 ASN A 65 REMARK 465 VAL A 66 REMARK 465 GLY A 67 REMARK 465 GLY A 68 REMARK 465 ALA A 69 REMARK 465 VAL A 70 REMARK 465 VAL A 71 REMARK 465 THR A 72 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 THR A 75 REMARK 465 ALA A 76 REMARK 465 VAL A 77 REMARK 465 ALA A 78 REMARK 465 GLN A 79 REMARK 465 LYS A 80 REMARK 465 THR A 81 REMARK 465 VAL A 82 REMARK 465 GLU A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ILE A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 THR A 92 REMARK 465 GLY A 93 REMARK 465 PHE A 94 REMARK 465 VAL A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 97 REMARK 465 ASP A 98 REMARK 465 GLN A 99 REMARK 465 LEU A 100 REMARK 465 GLY A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 GLU A 104 REMARK 465 GLU A 105 REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 GLN A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 ILE A 112 REMARK 465 LEU A 113 REMARK 465 GLU A 114 REMARK 465 ASP A 115 REMARK 465 MET A 116 REMARK 465 PRO A 117 REMARK 465 VAL A 118 REMARK 465 ASP A 119 REMARK 465 PRO A 120 REMARK 465 ASP A 121 REMARK 465 ASN A 122 REMARK 465 GLU A 123 REMARK 465 ALA A 124 REMARK 465 TYR A 125 REMARK 465 GLU A 126 REMARK 465 MET A 127 REMARK 465 PRO A 128 REMARK 465 SER A 129 REMARK 465 GLU A 130 REMARK 465 GLU A 131 REMARK 465 GLY A 132 REMARK 465 TYR A 133 REMARK 465 GLN A 134 REMARK 465 ASP A 135 REMARK 465 TYR A 136 REMARK 465 GLU A 137 REMARK 465 PRO A 138 REMARK 465 GLU A 139 REMARK 465 ALA A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 2 N - CA - CB ANGL. DEV. = -15.6 DEGREES REMARK 500 2 ASP A 2 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 2 ASP A 2 N - CA - CB ANGL. DEV. = -15.4 DEGREES REMARK 500 2 ASP A 2 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 3 ASP A 2 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 3 ASP A 2 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 4 ASP A 2 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 5 ASP A 2 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 5 ASP A 2 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -123.70 -138.70 REMARK 500 1 VAL A 3 -0.68 -153.14 REMARK 500 1 LYS A 10 -137.66 46.08 REMARK 500 1 GLU A 13 -126.29 63.33 REMARK 500 1 VAL A 15 41.90 -145.58 REMARK 500 1 ALA A 17 -161.53 61.93 REMARK 500 1 LYS A 23 99.99 -171.45 REMARK 500 2 ASP A 2 -81.34 -27.39 REMARK 500 2 VAL A 3 40.70 -94.21 REMARK 500 2 PHE A 4 -55.53 -147.25 REMARK 500 2 MET A 5 51.33 -142.34 REMARK 500 2 LYS A 6 135.56 79.86 REMARK 500 2 SER A 9 74.31 50.86 REMARK 500 2 GLU A 13 -26.89 73.83 REMARK 500 2 LYS A 21 -164.06 64.33 REMARK 500 3 VAL A 3 -26.33 91.35 REMARK 500 3 LYS A 6 74.16 47.05 REMARK 500 3 LYS A 10 -107.15 -154.15 REMARK 500 3 ALA A 17 -167.01 66.36 REMARK 500 3 LYS A 21 -50.03 84.70 REMARK 500 3 THR A 22 147.10 159.41 REMARK 500 4 ASP A 2 -89.03 -37.12 REMARK 500 4 PHE A 4 -147.35 -163.84 REMARK 500 4 MET A 5 -50.96 -120.53 REMARK 500 4 LEU A 8 -39.25 -139.45 REMARK 500 4 SER A 9 77.89 40.66 REMARK 500 4 LYS A 12 -2.38 -145.95 REMARK 500 4 VAL A 16 -38.35 -146.61 REMARK 500 4 ALA A 19 140.94 90.65 REMARK 500 4 GLU A 20 -136.87 77.44 REMARK 500 4 LYS A 23 96.56 74.77 REMARK 500 5 VAL A 3 -128.00 -84.96 REMARK 500 5 MET A 5 -59.97 84.60 REMARK 500 5 ALA A 11 -52.79 71.49 REMARK 500 5 ALA A 17 -154.51 -172.24 REMARK 500 5 GLU A 20 -92.30 -126.28 REMARK 500 5 LYS A 23 44.02 70.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 ASP A 2 5 -107.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 ASP A 2 N 82.5 REMARK 620 3 ASP A 2 OD1 154.0 89.4 REMARK 620 4 HOH A 301 O 108.0 153.6 90.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: D_1292160191 RELATED DB: PDB-DEV REMARK 900 RELATED ID: D_1292160382 RELATED DB: PDB-DEV REMARK 900 RELATED ID: 35086 RELATED DB: BMRB REMARK 900 CU(II)-BOUND ALPHA-SYNUCLEIN MONOMER COMPLEX - LOCAL STRUCTURE OF N- REMARK 900 TERMINAL BINDING SITE DBREF 34AF A 1 140 UNP P37840 SYUA_HUMAN 1 140 SEQRES 1 A 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 A 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 A 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 A 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 A 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 A 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 A 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 A 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 A 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 A 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 A 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA HET CU A 201 1 HETNAM CU COPPER (II) ION FORMUL 2 CU CU 2+ FORMUL 3 HOH *(H2 O) LINK N MET A 1 CU CU A 201 1555 1555 2.20 LINK N ASP A 2 CU CU A 201 1555 1555 1.87 LINK OD1 ASP A 2 CU CU A 201 1555 1555 1.88 LINK CU CU A 201 O HOH A 301 1555 1555 2.20 CRYST1 58.878 58.878 58.878 109.47 109.47 109.47 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016984 0.006004 0.010399 0.00000 SCALE2 0.000000 0.018014 0.010399 0.00000 SCALE3 0.000000 0.000000 0.020801 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL CONECT 1 378 CONECT 19 378 CONECT 25 378 CONECT 378 1 19 25 379 CONECT 379 378 MASTER 300 0 1 0 0 0 0 6 183 1 5 11 END