HEADER LIGASE 18-SEP-26 34JW TITLE IDOL RING DOMAIN IN COMPLEX WITH Z1213725191 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MYLIP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: INDUCIBLE DEGRADER OF THE LDL-RECEPTOR,IDOL,MYOSIN COMPND 5 REGULATORY LIGHT CHAIN INTERACTING PROTEIN,MIR,RING-TYPE E3 UBIQUITIN COMPND 6 TRANSFERASE MYLIP; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYLIP, BZF1, IDOL, BM-023, PP5242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IDOL, RING, E3, UBIQUITIN, MYLIP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.BRADSHAW,S.HAFIAN,F.GUENTHER REVDAT 1 07-OCT-26 34JW 0 JRNL AUTH W.J.BRADSHAW,S.HAFIAN,F.GUENTHER JRNL TITL IDOL RING DOMAIN IN COMPLEX WITH Z1213725191 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 64.8 REMARK 3 NUMBER OF REFLECTIONS : 55983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.465 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 107 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52900 REMARK 3 B22 (A**2) : -0.26900 REMARK 3 B33 (A**2) : -0.27400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2311 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2138 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3125 ; 1.527 ; 1.882 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4971 ; 0.512 ; 1.776 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ; 7.620 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;10.592 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2693 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 477 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 74 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1090 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 30 ; 0.102 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 5.973 ; 1.939 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1131 ; 5.943 ; 1.938 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 8.825 ; 3.476 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1413 ; 8.836 ; 3.480 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 9.698 ; 2.725 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1181 ; 9.694 ; 2.726 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1703 ;14.598 ; 4.675 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1704 ;14.594 ; 4.676 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4449 ; 4.013 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 368 A 436 NULL REMARK 3 1 B 368 B 436 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 368 A 436 NULL REMARK 3 2 C 368 C 436 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 368 A 435 NULL REMARK 3 3 D 368 D 435 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 B 368 B 436 NULL REMARK 3 4 C 368 C 436 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 B 368 B 435 NULL REMARK 3 5 D 368 D 435 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 6 C 368 C 435 NULL REMARK 3 6 D 368 D 435 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 34JW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-26. REMARK 100 THE DEPOSITION ID IS D_1292161108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9156 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55983 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.225 REMARK 200 RESOLUTION RANGE LOW (A) : 39.595 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 6.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM PHOSPHATE CITRATE, 4% REMARK 280 PEG 400, 4% PEG 500 MME, 4% PEG 600, 4% PEG 1000, PH 4.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.96050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 437 REMARK 465 SER A 438 REMARK 465 LEU A 439 REMARK 465 LEU A 440 REMARK 465 ASN A 441 REMARK 465 LEU A 442 REMARK 465 THR A 443 REMARK 465 VAL A 444 REMARK 465 ILE A 445 REMARK 465 THR B 437 REMARK 465 SER B 438 REMARK 465 LEU B 439 REMARK 465 LEU B 440 REMARK 465 ASN B 441 REMARK 465 LEU B 442 REMARK 465 THR B 443 REMARK 465 VAL B 444 REMARK 465 ILE B 445 REMARK 465 THR C 437 REMARK 465 SER C 438 REMARK 465 LEU C 439 REMARK 465 LEU C 440 REMARK 465 ASN C 441 REMARK 465 LEU C 442 REMARK 465 THR C 443 REMARK 465 VAL C 444 REMARK 465 ILE C 445 REMARK 465 SER D 438 REMARK 465 LEU D 439 REMARK 465 LEU D 440 REMARK 465 ASN D 441 REMARK 465 LEU D 442 REMARK 465 THR D 443 REMARK 465 VAL D 444 REMARK 465 ILE D 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 379 O HOH A 601 1.95 REMARK 500 O HOH A 649 O HOH A 654 2.11 REMARK 500 NE2 GLN A 414 O HOH A 602 2.18 REMARK 500 O HOH D 645 O HOH D 653 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN C 414 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 396 22.10 -151.44 REMARK 500 ASN B 396 17.38 -152.24 REMARK 500 ASN C 396 21.42 -152.29 REMARK 500 ASN D 396 18.60 -151.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 387 SG REMARK 620 2 CYS A 390 SG 107.8 REMARK 620 3 CYS A 408 SG 113.7 114.0 REMARK 620 4 CYS A 411 SG 104.5 113.1 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 HIS A 404 ND1 109.7 REMARK 620 3 CYS A 418 SG 107.5 108.0 REMARK 620 4 CYS A 421 SG 110.1 109.1 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 387 SG REMARK 620 2 CYS B 390 SG 106.6 REMARK 620 3 CYS B 408 SG 114.8 112.2 REMARK 620 4 CYS B 411 SG 103.9 110.8 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 402 SG REMARK 620 2 HIS B 404 ND1 108.4 REMARK 620 3 CYS B 418 SG 107.4 107.4 REMARK 620 4 CYS B 421 SG 112.1 109.6 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 387 SG REMARK 620 2 CYS C 390 SG 106.1 REMARK 620 3 CYS C 408 SG 113.7 115.4 REMARK 620 4 CYS C 411 SG 104.9 113.8 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 402 SG REMARK 620 2 HIS C 404 ND1 109.9 REMARK 620 3 CYS C 418 SG 107.4 108.0 REMARK 620 4 CYS C 421 SG 110.2 108.8 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 387 SG REMARK 620 2 CYS D 390 SG 106.3 REMARK 620 3 CYS D 408 SG 115.2 111.2 REMARK 620 4 CYS D 411 SG 104.4 110.5 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 402 SG REMARK 620 2 HIS D 404 ND1 106.7 REMARK 620 3 CYS D 418 SG 108.8 107.0 REMARK 620 4 CYS D 421 SG 109.9 111.9 112.3 REMARK 620 N 1 2 3 DBREF 34JW A 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 34JW B 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 34JW C 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 34JW D 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 SEQADV 34JW SER A 368 UNP Q8WY64 EXPRESSION TAG SEQADV 34JW SER B 368 UNP Q8WY64 EXPRESSION TAG SEQADV 34JW SER C 368 UNP Q8WY64 EXPRESSION TAG SEQADV 34JW SER D 368 UNP Q8WY64 EXPRESSION TAG SEQRES 1 A 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 A 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 A 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 A 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 A 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 A 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 B 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 B 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 B 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 B 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 B 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 B 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 C 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 C 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 C 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 C 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 C 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 C 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 D 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 D 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 D 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 D 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 D 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 D 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE HET ZN A 501 1 HET ZN A 502 1 HET ES3 A 503 6 HET ES3 A 504 6 HET ZN B 501 1 HET ZN B 502 1 HET ES3 B 503 6 HET ES3 B 504 6 HET ZN C 501 1 HET ZN C 502 1 HET ES3 C 503 6 HET ES3 C 504 6 HET ZN D 501 1 HET ZN D 502 1 HET ES3 D 503 6 HET ES3 D 504 6 HETNAM ZN ZINC ION HETNAM ES3 4-BROMO-1H-IMIDAZOLE FORMUL 5 ZN 8(ZN 2+) FORMUL 7 ES3 8(C3 H3 BR N2) FORMUL 21 HOH *264(H2 O) HELIX 1 AA1 SER A 368 MET A 385 1 18 HELIX 2 AA2 CYS A 408 ALA A 413 1 6 HELIX 3 AA3 GLN B 369 MET B 385 1 17 HELIX 4 AA4 CYS B 408 GLN B 414 1 7 HELIX 5 AA5 GLN C 369 MET C 385 1 17 HELIX 6 AA6 CYS C 408 GLN C 414 1 7 HELIX 7 AA7 GLN D 369 MET D 385 1 17 HELIX 8 AA8 CYS D 408 GLN D 414 1 7 HELIX 9 AA9 LEU D 433 THR D 437 5 5 SHEET 1 AA1 2 SER A 397 CYS A 400 0 SHEET 2 AA1 2 HIS A 427 HIS A 430 -1 O HIS A 427 N CYS A 400 SHEET 1 AA2 2 SER B 397 CYS B 400 0 SHEET 2 AA2 2 HIS B 427 HIS B 430 -1 O GLN B 429 N THR B 398 SHEET 1 AA3 2 SER C 397 CYS C 400 0 SHEET 2 AA3 2 HIS C 427 HIS C 430 -1 O HIS C 427 N CYS C 400 SHEET 1 AA4 2 SER D 397 CYS D 400 0 SHEET 2 AA4 2 HIS D 427 HIS D 430 -1 O HIS D 427 N CYS D 400 LINK SG CYS A 387 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 390 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 402 ZN ZN A 501 1555 1555 2.31 LINK ND1 HIS A 404 ZN ZN A 501 1555 1555 2.09 LINK SG CYS A 408 ZN ZN A 502 1555 1555 2.39 LINK SG CYS A 411 ZN ZN A 502 1555 1555 2.39 LINK SG CYS A 418 ZN ZN A 501 1555 1555 2.28 LINK SG CYS A 421 ZN ZN A 501 1555 1555 2.31 LINK SG CYS B 387 ZN ZN B 502 1555 1555 2.38 LINK SG CYS B 390 ZN ZN B 502 1555 1555 2.34 LINK SG CYS B 402 ZN ZN B 501 1555 1555 2.29 LINK ND1 HIS B 404 ZN ZN B 501 1555 1555 2.03 LINK SG CYS B 408 ZN ZN B 502 1555 1555 2.37 LINK SG CYS B 411 ZN ZN B 502 1555 1555 2.32 LINK SG CYS B 418 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 421 ZN ZN B 501 1555 1555 2.32 LINK SG CYS C 387 ZN ZN C 502 1555 1555 2.36 LINK SG CYS C 390 ZN ZN C 502 1555 1555 2.38 LINK SG CYS C 402 ZN ZN C 501 1555 1555 2.29 LINK ND1 HIS C 404 ZN ZN C 501 1555 1555 2.07 LINK SG CYS C 408 ZN ZN C 502 1555 1555 2.37 LINK SG CYS C 411 ZN ZN C 502 1555 1555 2.33 LINK SG CYS C 418 ZN ZN C 501 1555 1555 2.33 LINK SG CYS C 421 ZN ZN C 501 1555 1555 2.32 LINK SG CYS D 387 ZN ZN D 502 1555 1555 2.38 LINK SG CYS D 390 ZN ZN D 502 1555 1555 2.35 LINK SG CYS D 402 ZN ZN D 501 1555 1555 2.34 LINK ND1 HIS D 404 ZN ZN D 501 1555 1555 2.05 LINK SG CYS D 408 ZN ZN D 502 1555 1555 2.37 LINK SG CYS D 411 ZN ZN D 502 1555 1555 2.35 LINK SG CYS D 418 ZN ZN D 501 1555 1555 2.31 LINK SG CYS D 421 ZN ZN D 501 1555 1555 2.29 CISPEP 1 CYS A 400 PRO A 401 0 11.38 CISPEP 2 CYS B 400 PRO B 401 0 9.01 CISPEP 3 CYS C 400 PRO C 401 0 10.29 CISPEP 4 CYS D 400 PRO D 401 0 9.77 CRYST1 44.284 47.921 70.131 90.00 91.11 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022582 0.000000 0.000436 0.00000 SCALE2 0.000000 0.020868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014262 0.00000 CONECT 173 2223 CONECT 194 2223 CONECT 286 2222 CONECT 297 2222 CONECT 326 2223 CONECT 347 2223 CONECT 395 2222 CONECT 415 2222 CONECT 726 2237 CONECT 747 2237 CONECT 839 2236 CONECT 850 2236 CONECT 879 2237 CONECT 903 2237 CONECT 951 2236 CONECT 971 2236 CONECT 1268 2251 CONECT 1289 2251 CONECT 1387 2250 CONECT 1398 2250 CONECT 1427 2251 CONECT 1448 2251 CONECT 1505 2250 CONECT 1525 2250 CONECT 1830 2265 CONECT 1851 2265 CONECT 1943 2264 CONECT 1954 2264 CONECT 1983 2265 CONECT 2007 2265 CONECT 2055 2264 CONECT 2075 2264 CONECT 2222 286 297 395 415 CONECT 2223 173 194 326 347 CONECT 2224 2225 CONECT 2225 2224 2226 2229 CONECT 2226 2225 2227 CONECT 2227 2226 2228 CONECT 2228 2227 2229 CONECT 2229 2225 2228 CONECT 2230 2231 CONECT 2231 2230 2232 2235 CONECT 2232 2231 2233 CONECT 2233 2232 2234 CONECT 2234 2233 2235 CONECT 2235 2231 2234 CONECT 2236 839 850 951 971 CONECT 2237 726 747 879 903 CONECT 2238 2239 CONECT 2239 2238 2240 2243 CONECT 2240 2239 2241 CONECT 2241 2240 2242 CONECT 2242 2241 2243 CONECT 2243 2239 2242 CONECT 2244 2245 CONECT 2245 2244 2246 2249 CONECT 2246 2245 2247 CONECT 2247 2246 2248 CONECT 2248 2247 2249 CONECT 2249 2245 2248 CONECT 2250 1387 1398 1505 1525 CONECT 2251 1268 1289 1427 1448 CONECT 2252 2253 CONECT 2253 2252 2254 2257 CONECT 2254 2253 2255 CONECT 2255 2254 2256 CONECT 2256 2255 2257 CONECT 2257 2253 2256 CONECT 2258 2259 CONECT 2259 2258 2260 2263 CONECT 2260 2259 2261 CONECT 2261 2260 2262 CONECT 2262 2261 2263 CONECT 2263 2259 2262 CONECT 2264 1943 1954 2055 2075 CONECT 2265 1830 1851 1983 2007 CONECT 2266 2267 CONECT 2267 2266 2268 2271 CONECT 2268 2267 2269 CONECT 2269 2268 2270 CONECT 2270 2269 2271 CONECT 2271 2267 2270 CONECT 2272 2273 CONECT 2273 2272 2274 2277 CONECT 2274 2273 2275 CONECT 2275 2274 2276 CONECT 2276 2275 2277 CONECT 2277 2273 2276 MASTER 457 0 16 9 8 0 0 6 2479 4 88 24 END