HEADER TOXIN 26-SEP-26 34QD TITLE THE STRUCTURE OF THE MONOCLINIC CRYSTAL FORM OF THE TYPE II RIBOSOME TITLE 2 INACTIVATING PROTEIN FROM WINTER ACONITE ERANTHIS HYEMALIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LECTIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERANTHIS HYEMALIS; SOURCE 3 ORGANISM_TAXID: 37492; SOURCE 4 TISSUE: BULB; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ERANTHIS HYEMALIS; SOURCE 7 ORGANISM_TAXID: 37492; SOURCE 8 TISSUE: BULB KEYWDS RIBOSOME INACTIVATING PROTEIN N-GLYCOSIDASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MCCONNELL,C.N.NAYLOR,M.E.BERTOLO-PARDO,R.BORGES,S.M.PRINCE, AUTHOR 2 J.B.COOPER,R.A.PALMER,D.R.LISGARTEN REVDAT 1 21-OCT-26 34QD 0 SPRSDE 21-OCT-26 34QD 9TPE JRNL AUTH M.-T.MCCONNELL,R.C.TALBERT,L.J.BYRNE,D.R.LISGARTEN, JRNL AUTH 2 J.LISGARTEN,M.E.BERTOLO-PARDO,S.C.HARVEY,C.W.LEVY,E.D.LOWE, JRNL AUTH 3 J.B.COOPER,C.NAYLOR,R.QUIROZ,R.BORGES,S.M.PRINCE,R.A.PALMER JRNL TITL THE STRUCTURE OF THE TYPE II RIBOSOME INACTIVATING PROTEIN JRNL TITL 2 FROM WINTER ACONITE ERANTHIS HYEMALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SERVALCAT 0.4.142 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 104912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5426 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 807 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC B-FACTOR REFINEMENT. REMARK 4 REMARK 4 34QD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-26. REMARK 100 THE DEPOSITION ID IS D_1292161502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110338 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED TO 4 REMARK 280 MG/ML FOR CRYSTALLISATION SCREENING USING MRC MAXI 48-WELL REMARK 280 PLATES (MOLECULAR DIMENSIONS). A WELL VOLUME OF 200 UL WAS USED REMARK 280 AND THE DROPS WERE MADE WITH 1 UL OF PROTEIN AND 1 UL OF WELL REMARK 280 SOLUTION. A CRYSTAL WAS OBTAINED AFTER 24 WEEKS AT ROOM REMARK 280 TEMPERATURE IN CONDITION D10 OF THE PACT PREMIER SCREEN (0.2 M REMARK 280 MAGNESIUM CHLORIDE, 0.1 M TRIS PH 8, 20 % PEG 6000)., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.58500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 826 O HOH A 935 1.86 REMARK 500 O HOH B 787 O HOH B 856 2.02 REMARK 500 CG2 VAL A 66 O HOH A 904 2.03 REMARK 500 O HOH A 847 O HOH A 884 2.06 REMARK 500 O HOH A 695 O HOH A 792 2.11 REMARK 500 O HOH A 653 O HOH A 790 2.12 REMARK 500 O HOH A 603 O HOH A 732 2.15 REMARK 500 O HOH B 678 O HOH B 788 2.15 REMARK 500 CD2 LEU B 216 O HOH B 534 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 261 CA SER B 261 CB 0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 23 NH1 - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 23 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 23 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 125 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR B 141 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 214 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 242 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 168.43 75.85 REMARK 500 ASP A 35 -1.84 76.11 REMARK 500 PHE A 98 75.41 -118.35 REMARK 500 ILE A 210 -164.11 -124.63 REMARK 500 ARG A 238 -52.36 -125.61 REMARK 500 CYS A 239 -56.00 -179.32 REMARK 500 THR A 240 118.84 86.87 REMARK 500 ASP B 186 80.15 -150.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 238 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 955 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 962 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH B 931 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 934 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 935 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 936 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 937 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B 938 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 939 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH B 940 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH B 941 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH B 942 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH B 943 DISTANCE = 9.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 650 O REMARK 620 2 HOH A 883 O 167.1 REMARK 620 3 HOH A 891 O 83.3 99.2 REMARK 620 4 HOH A 918 O 93.7 98.7 93.9 REMARK 620 5 HOH A 945 O 93.0 81.9 167.7 98.0 REMARK 620 6 HOH A 948 O 87.0 81.6 74.3 168.0 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 888 O REMARK 620 2 HOH B 515 O 174.6 REMARK 620 3 HOH B 777 O 95.3 89.1 REMARK 620 4 HOH B 852 O 89.5 94.6 77.3 REMARK 620 5 HOH B 899 O 80.9 95.9 90.6 163.8 REMARK 620 6 HOH B 927 O 75.7 100.0 170.8 100.4 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 248 OE1 REMARK 620 2 HOH B 523 O 80.1 REMARK 620 3 HOH B 676 O 86.5 98.3 REMARK 620 4 HOH B 708 O 89.4 166.6 89.3 REMARK 620 5 HOH B 760 O 92.0 74.2 172.5 98.1 REMARK 620 6 HOH B 867 O 170.9 92.5 100.0 97.1 80.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9TPF RELATED DB: PDB REMARK 900 THE ORTHORHOMBIC CRYSTAL FORM OF THE SAME PROTEIN. DBREF1 34QD A 1 241 UNP A0ACN4YGJ0_ERYHA DBREF2 34QD A A0ACN4YGJ0 1 241 DBREF1 34QD B 1 261 UNP A0ACN4YGJ1_ERYHA DBREF2 34QD B A0ACN4YGJ1 1 261 SEQADV 34QD GLU A 49 UNP A0ACN4YGJ ASN 49 CONFLICT SEQADV 34QD THR A 100 UNP A0ACN4YGJ SER 100 CONFLICT SEQADV 34QD GLU A 130 UNP A0ACN4YGJ ASP 130 CONFLICT SEQADV 34QD LYS A 180 UNP A0ACN4YGJ ARG 180 CONFLICT SEQADV 34QD GLN A 185 UNP A0ACN4YGJ GLU 185 CONFLICT SEQADV 34QD GLU A 194 UNP A0ACN4YGJ GLN 194 CONFLICT SEQADV 34QD ASN B 16 UNP A0ACN4YGJ ASP 16 CONFLICT SEQADV 34QD ASP B 92 UNP A0ACN4YGJ ASN 92 CONFLICT SEQADV 34QD ASN B 156 UNP A0ACN4YGJ ASP 156 CONFLICT SEQADV 34QD GLN B 165 UNP A0ACN4YGJ GLU 165 CONFLICT SEQADV 34QD ALA B 194 UNP A0ACN4YGJ SER 194 CONFLICT SEQRES 1 A 241 ALA LYS ILE HIS TYR LYS ASN SER ALA ASN PRO ASN ILE SEQRES 2 A 241 THR ALA TYR THR GLN PHE ILE THR ALA LEU ARG ASP ARG SEQRES 3 A 241 LEU SER SER GLY SER HIS VAL HIS ASP PHE PRO GLN LEU SEQRES 4 A 241 ARG GLN PRO SER ASN LEU PRO VAL ALA GLU ARG PHE ILE SEQRES 5 A 241 LEU VAL ASP LEU GLU ASN GLY ALA GLY HIS THR ILE THR SEQRES 6 A 241 VAL PRO ILE ASP VAL PHE ASN ALA TYR VAL VAL GLY TYR SEQRES 7 A 241 LEU VAL GLY ASP THR PHE ASP TYR PHE THR ASP ALA PRO SEQRES 8 A 241 PRO GLU ALA LEU ASP ILE PHE PRO THR ALA THR SER ARG SEQRES 9 A 241 SER LEU GLY PHE GLY GLY ASN TYR GLY ASN LEU GLY SER SEQRES 10 A 241 ARG GLU THR GLN GLU LEU GLY HIS ALA ALA LEU ASN GLU SEQRES 11 A 241 ALA ILE ASP ALA LEU PHE TYR SER TYR SER GLN ARG THR SEQRES 12 A 241 SER PHE LEU VAL ILE ILE GLN MET VAL SER GLU ALA ALA SEQRES 13 A 241 ARG ILE ARG TYR ILE GLU HIS LEU VAL ARG ARG SER MET SEQRES 14 A 241 ILE SER ASN ALA ASN PHE LEU PRO ASP PRO LYS ALA LEU SEQRES 15 A 241 SER LEU GLN ASN SER TRP ASP PRO LEU SER THR GLU ILE SEQRES 16 A 241 GLN LEU SER GLY SER ARG GLY VAL PHE ILE ARG PRO VAL SEQRES 17 A 241 TRP ILE GLN ASN ILE SER TYR GLN VAL VAL ILE ILE ASN SEQRES 18 A 241 ASN VAL GLU GLU VAL LEU ARG GLY ALA ALA LEU ALA LEU SEQRES 19 A 241 LEU LEU PHE ARG CYS THR ALA SEQRES 1 B 261 SER CYS PRO SER SER GLU THR VAL THR ARG SER ILE ILE SEQRES 2 B 261 GLY ARG ASN GLN LEU CYS VAL ASP VAL ARG ASP GLY GLN SEQRES 3 B 261 ASN ASN ASP GLY ASN PRO ILE GLN LEU TRP GLN CYS THR SEQRES 4 B 261 GLN GLN GLN ASN GLN ARG TRP THR PHE LYS ASP ASP GLY SEQRES 5 B 261 THR ILE ARG SER LEU GLY LYS CYS LEU THR THR TYR GLY SEQRES 6 B 261 TYR SER ALA GLY ALA TYR ILE MET ILE TYR ASP CYS ASP SEQRES 7 B 261 SER ALA VAL PRO ASP ALA THR VAL TRP ALA LEU SER ASN SEQRES 8 B 261 ASP GLY THR ILE ILE ASN PRO ARG SER GLY LEU ALA LEU SEQRES 9 B 261 THR ALA GLU ASN SER SER PRO GLY THR THR LEU THR VAL SEQRES 10 B 261 GLU THR ASP ILE ASN ALA SER ARG GLN ALA TRP THR VAL SEQRES 11 B 261 GLY GLU TYR THR GLN PRO ALA ILE VAL SER TYR ILE SER SEQRES 12 B 261 GLY PHE ARG GLU MET CYS LEU GLN ALA ASN ASP ASP ASN SEQRES 13 B 261 VAL LEU VAL TRP LEU GLU SER CYS GLN ILE GLY GLN GLN SEQRES 14 B 261 LYS GLN GLN TRP ALA LEU TYR SER ASP SER THR ILE ARG SEQRES 15 B 261 VAL PHE SER ASP PRO SER LEU CYS VAL THR SER ALA GLY SEQRES 16 B 261 HIS SER SER SER ASP ILE ILE GLY ILE LEU LYS CYS GLN SEQRES 17 B 261 GLY TRP GLY ASN GLN ARG TRP LEU PHE ARG ALA ASP GLY SEQRES 18 B 261 THR ILE LEU ASN PRO ASN ALA ARG LEU VAL MET ASP VAL SEQRES 19 B 261 ARG GLY SER ASP VAL SER MET ARG GLU ILE ILE LEU TYR SEQRES 20 B 261 GLU PRO THR GLY ASN PRO ASN GLN GLN TRP LEU ALA TYR SEQRES 21 B 261 SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET FUC C 4 10 HET NAG D 1 14 HET NAG D 2 14 HET MG A 501 1 HET PG4 B 401 13 HET PG4 B 402 13 HET PG4 B 403 13 HET MG B 404 1 HET MG B 405 1 HET CL B 406 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 5 MG 3(MG 2+) FORMUL 6 PG4 3(C8 H18 O5) FORMUL 11 CL CL 1- FORMUL 12 HOH *807(H2 O) HELIX 1 AA1 ASN A 12 SER A 28 1 17 HELIX 2 AA2 PRO A 46 ARG A 50 1 5 HELIX 3 AA3 PRO A 91 ILE A 97 5 7 HELIX 4 AA4 ASN A 111 GLY A 116 1 6 HELIX 5 AA5 SER A 117 GLN A 121 5 5 HELIX 6 AA6 GLY A 124 TYR A 137 1 14 HELIX 7 AA7 SER A 140 ILE A 158 1 19 HELIX 8 AA8 ILE A 158 ASN A 172 1 15 HELIX 9 AA9 ASP A 178 SER A 198 1 21 HELIX 10 AB1 VAL A 223 LEU A 227 1 5 HELIX 11 AB2 GLY B 14 LEU B 18 5 5 HELIX 12 AB3 ASP B 24 GLN B 26 5 3 HELIX 13 AB4 GLN B 41 ARG B 45 5 5 HELIX 14 AB5 VAL B 81 VAL B 86 5 6 HELIX 15 AB6 ALA B 123 ALA B 127 5 5 HELIX 16 AB7 GLY B 144 MET B 148 5 5 HELIX 17 AB8 GLN B 168 GLN B 171 5 4 HELIX 18 AB9 TRP B 210 ARG B 214 5 5 HELIX 19 AC1 GLY B 236 ARG B 242 5 7 HELIX 20 AC2 ASN B 252 GLN B 256 5 5 SHEET 1 AA1 3 ILE A 3 LYS A 6 0 SHEET 2 AA1 3 PHE A 51 GLU A 57 1 O ASP A 55 N TYR A 5 SHEET 3 AA1 3 THR A 63 ASP A 69 -1 O VAL A 66 N VAL A 54 SHEET 1 AA2 2 HIS A 32 VAL A 33 0 SHEET 2 AA2 2 PHE A 36 PRO A 37 -1 O PHE A 36 N VAL A 33 SHEET 1 AA3 3 GLY A 77 VAL A 80 0 SHEET 2 AA3 3 THR A 83 TYR A 86 -1 O ASP A 85 N TYR A 78 SHEET 3 AA3 3 THR A 102 SER A 105 1 O THR A 102 N PHE A 84 SHEET 1 AA4 2 VAL A 203 GLN A 211 0 SHEET 2 AA4 2 VAL A 217 ASN A 222 -1 O VAL A 218 N ILE A 210 SHEET 1 AA5 6 ILE B 72 TYR B 75 0 SHEET 2 AA5 6 LYS B 59 THR B 63 -1 N CYS B 60 O TYR B 75 SHEET 3 AA5 6 ILE B 54 SER B 56 -1 N ILE B 54 O LEU B 61 SHEET 4 AA5 6 TRP B 46 PHE B 48 -1 N THR B 47 O ARG B 55 SHEET 5 AA5 6 THR B 9 ILE B 13 -1 N ARG B 10 O TRP B 46 SHEET 6 AA5 6 THR B 129 GLY B 131 -1 O THR B 129 N ILE B 13 SHEET 1 AA6 2 CYS B 19 VAL B 22 0 SHEET 2 AA6 2 ILE B 33 TRP B 36 -1 O TRP B 36 N CYS B 19 SHEET 1 AA7 4 ALA B 88 LEU B 89 0 SHEET 2 AA7 4 ILE B 95 ASN B 97 -1 O ILE B 96 N ALA B 88 SHEET 3 AA7 4 LEU B 102 THR B 105 -1 O LEU B 104 N ILE B 95 SHEET 4 AA7 4 THR B 116 GLU B 118 -1 O GLU B 118 N ALA B 103 SHEET 1 AA8 2 TYR B 141 SER B 143 0 SHEET 2 AA8 2 LEU B 258 TYR B 260 -1 O LEU B 258 N SER B 143 SHEET 1 AA9 2 CYS B 149 ALA B 152 0 SHEET 2 AA9 2 VAL B 159 GLU B 162 -1 O GLU B 162 N CYS B 149 SHEET 1 AB1 4 TRP B 173 LEU B 175 0 SHEET 2 AB1 4 ILE B 181 VAL B 183 -1 O ARG B 182 N ALA B 174 SHEET 3 AB1 4 ASP B 186 SER B 193 -1 O VAL B 191 N ILE B 181 SHEET 4 AB1 4 ILE B 202 LYS B 206 -1 O GLY B 203 N THR B 192 SHEET 1 AB2 4 LEU B 216 PHE B 217 0 SHEET 2 AB2 4 ILE B 223 ASN B 225 -1 O LEU B 224 N LEU B 216 SHEET 3 AB2 4 LEU B 230 VAL B 234 -1 O LEU B 230 N ASN B 225 SHEET 4 AB2 4 ILE B 244 TYR B 247 -1 O ILE B 245 N ASP B 233 SSBOND 1 CYS A 239 CYS B 2 1555 1555 2.24 SSBOND 2 CYS B 19 CYS B 38 1555 1555 2.07 SSBOND 3 CYS B 60 CYS B 77 1555 1555 2.29 SSBOND 4 CYS B 149 CYS B 164 1555 1555 2.22 SSBOND 5 CYS B 190 CYS B 207 1555 1555 2.06 LINK ND2 ASN A 12 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN B 122 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O3 NAG C 1 C1 FUC C 4 1555 1555 1.41 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK MG MG A 501 O HOH A 650 1555 1555 1.77 LINK MG MG A 501 O HOH A 883 1555 1555 2.26 LINK MG MG A 501 O HOH A 891 1555 1555 2.32 LINK MG MG A 501 O HOH A 918 1555 1555 2.14 LINK MG MG A 501 O HOH A 945 1555 1555 2.05 LINK MG MG A 501 O HOH A 948 1555 1555 2.14 LINK O HOH A 888 MG MG B 405 1455 1555 2.50 LINK OE1AGLU B 248 MG MG B 404 1555 1555 2.04 LINK MG MG B 404 O HOH B 523 1555 1555 2.05 LINK MG MG B 404 O HOH B 676 1555 1555 2.12 LINK MG MG B 404 O HOH B 708 1555 1555 2.15 LINK MG MG B 404 O HOH B 760 1555 1555 2.29 LINK MG MG B 404 O HOH B 867 1555 1555 2.12 LINK MG MG B 405 O HOH B 515 1555 1555 1.94 LINK MG MG B 405 O HOH B 777 1555 1555 2.24 LINK MG MG B 405 O HOH B 852 1555 1555 2.30 LINK MG MG B 405 O HOH B 899 1555 1555 2.12 LINK MG MG B 405 O HOH B 927 1555 1555 2.08 CRYST1 46.150 93.170 70.140 90.00 96.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021668 0.000000 0.002423 0.00000 SCALE2 0.000000 0.010733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014346 0.00000 CONECT 95 4006 CONECT 1911 1937 CONECT 1937 1911 CONECT 2065 2222 CONECT 2222 2065 CONECT 2404 2539 CONECT 2539 2404 CONECT 2868 4055 CONECT 3081 3212 CONECT 3212 3081 CONECT 3428 3549 CONECT 3549 3428 CONECT 3896 4123 CONECT 4006 95 4007 4017 CONECT 4007 4006 4008 4014 CONECT 4008 4007 4009 4015 CONECT 4009 4008 4010 4016 CONECT 4010 4009 4011 4017 CONECT 4011 4010 4018 CONECT 4012 4013 4014 4019 CONECT 4013 4012 CONECT 4014 4007 4012 CONECT 4015 4008 4045 CONECT 4016 4009 4020 CONECT 4017 4006 4010 CONECT 4018 4011 CONECT 4019 4012 CONECT 4020 4016 4021 4031 CONECT 4021 4020 4022 4028 CONECT 4022 4021 4023 4029 CONECT 4023 4022 4024 4030 CONECT 4024 4023 4025 4031 CONECT 4025 4024 4032 CONECT 4026 4027 4028 4033 CONECT 4027 4026 CONECT 4028 4021 4026 CONECT 4029 4022 CONECT 4030 4023 4034 CONECT 4031 4020 4024 CONECT 4032 4025 CONECT 4033 4026 CONECT 4034 4030 4035 4043 CONECT 4035 4034 4036 4040 CONECT 4036 4035 4037 4041 CONECT 4037 4036 4038 4042 CONECT 4038 4037 4039 4043 CONECT 4039 4038 4044 CONECT 4040 4035 CONECT 4041 4036 CONECT 4042 4037 CONECT 4043 4034 4038 CONECT 4044 4039 CONECT 4045 4015 4046 4054 CONECT 4046 4045 4047 4051 CONECT 4047 4046 4048 4052 CONECT 4048 4047 4049 4053 CONECT 4049 4048 4050 4054 CONECT 4050 4049 CONECT 4051 4046 CONECT 4052 4047 CONECT 4053 4048 CONECT 4054 4045 4049 CONECT 4055 2868 4056 4066 CONECT 4056 4055 4057 4063 CONECT 4057 4056 4058 4064 CONECT 4058 4057 4059 4065 CONECT 4059 4058 4060 4066 CONECT 4060 4059 4067 CONECT 4061 4062 4063 4068 CONECT 4062 4061 CONECT 4063 4056 4061 CONECT 4064 4057 CONECT 4065 4058 4069 CONECT 4066 4055 4059 CONECT 4067 4060 CONECT 4068 4061 CONECT 4069 4065 4070 4080 CONECT 4070 4069 4071 4077 CONECT 4071 4070 4072 4078 CONECT 4072 4071 4073 4079 CONECT 4073 4072 4074 4080 CONECT 4074 4073 4081 CONECT 4075 4076 4077 4082 CONECT 4076 4075 CONECT 4077 4070 4075 CONECT 4078 4071 CONECT 4079 4072 CONECT 4080 4069 4073 CONECT 4081 4074 CONECT 4082 4075 CONECT 4083 4175 4408 4416 4443 CONECT 4083 4470 4473 CONECT 4084 4085 CONECT 4085 4084 4086 CONECT 4086 4085 4087 CONECT 4087 4086 4088 CONECT 4088 4087 4089 CONECT 4089 4088 4090 CONECT 4090 4089 4091 CONECT 4091 4090 4092 CONECT 4092 4091 4093 CONECT 4093 4092 4094 CONECT 4094 4093 4095 CONECT 4095 4094 4096 CONECT 4096 4095 CONECT 4097 4098 CONECT 4098 4097 4099 CONECT 4099 4098 4100 CONECT 4100 4099 4101 CONECT 4101 4100 4102 CONECT 4102 4101 4103 CONECT 4103 4102 4104 CONECT 4104 4103 4105 CONECT 4105 4104 4106 CONECT 4106 4105 4107 CONECT 4107 4106 4108 CONECT 4108 4107 4109 CONECT 4109 4108 CONECT 4110 4111 CONECT 4111 4110 4112 CONECT 4112 4111 4113 CONECT 4113 4112 4114 CONECT 4114 4113 4115 CONECT 4115 4114 4116 CONECT 4116 4115 4117 CONECT 4117 4116 4118 CONECT 4118 4117 4119 CONECT 4119 4118 4120 CONECT 4120 4119 4121 CONECT 4121 4120 4122 CONECT 4122 4121 CONECT 4123 3896 4512 4665 4697 CONECT 4123 4749 4856 CONECT 4124 4504 4766 4841 4888 CONECT 4124 4916 CONECT 4175 4083 CONECT 4408 4083 CONECT 4416 4083 CONECT 4443 4083 CONECT 4470 4083 CONECT 4473 4083 CONECT 4504 4124 CONECT 4512 4123 CONECT 4665 4123 CONECT 4697 4123 CONECT 4749 4123 CONECT 4766 4124 CONECT 4841 4124 CONECT 4856 4123 CONECT 4888 4124 CONECT 4916 4124 MASTER 375 0 13 20 34 0 0 6 4846 2 151 40 END