data_354D # _entry.id 354D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 354D pdb_0000354d 10.2210/pdb354d/pdb RCSB URL064 ? ? WWPDB D_1000178823 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-11-26 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2015-02-18 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_conn_type 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.value' 20 5 'Structure model' '_struct_conn.conn_type_id' 21 5 'Structure model' '_struct_conn.id' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_conn_type.id' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 354D _pdbx_database_status.recvd_initial_deposition_date 1997-10-01 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Correll, C.C.' 1 'Freeborn, B.' 2 'Moore, P.B.' 3 'Steitz, T.A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain.' 'Cell(Cambridge,Mass.)' 91 705 712 1997 CELLB5 US 0092-8674 0998 ? 9393863 '10.1016/S0092-8674(00)80457-2' 1 ;Use of Chemically Modified Nucleotides to Determine a 62-Nucleotide RNA Crystal Structure: A Survey of Phosphorothioates, Br, Pt, and Hg ; J.Biomol.Struct.Dyn. 15 165 172 1997 JBSDD6 US 0739-1102 0646 ? ? ? 2 'The Solution Structure of the Loop E/Loop D Region of E. coli 5S rRNA' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Correll, C.C.' 1 ? primary 'Freeborn, B.' 2 ? primary 'Moore, P.B.' 3 ? primary 'Steitz, T.A.' 4 ? 1 'Correll, C.C.' 5 ? 1 'Freeborn, B.' 6 ? 1 'Moore, P.B.' 7 ? 1 'Steitz, T.A.' 8 ? 2 'Dallas, A.' 9 ? 2 'Moore, P.B.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)-3') ; 3868.344 1 ? ? ? ? 2 polymer man ;RNA-DNA (5'-R(*GP*CP*GP*AP*GP*AP*GP*UP*AP*)-D(*DGP(S)*)-R(*GP*C)-3') ; 3930.489 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 water nat water 18.015 124 ? ? ? ? # _entity_keywords.entity_id 2 _entity_keywords.text 'MUTANT: G107 IS MUTATED TO C' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CCGAUGGUAGUG CCGAUGGUAGUG A ? 2 polyribonucleotide no yes 'GCGAGAGUA(DG)(G46)C' GCGAGAGUAGGC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 A n 1 5 U n 1 6 G n 1 7 G n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 2 1 G n 2 2 C n 2 3 G n 2 4 A n 2 5 G n 2 6 A n 2 7 G n 2 8 U n 2 9 A n 2 10 DG n 2 11 G46 n 2 12 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Escherichia ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? CYTOSOL ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? Escherichia ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? CYTOSOL ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G46 'RNA linking' n "GUANOSINE-5'-MONOTHIOPHOSPHATE" "5'-O-thiophosphonoguanosine" 'C10 H14 N5 O7 P S' 379.286 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 70 70 C C A . n A 1 2 C 2 71 71 C C A . n A 1 3 G 3 72 72 G G A . n A 1 4 A 4 73 73 A A A . n A 1 5 U 5 74 74 U U A . n A 1 6 G 6 75 75 G G A . n A 1 7 G 7 76 76 G G A . n A 1 8 U 8 77 77 U U A . n A 1 9 A 9 78 78 A A A . n A 1 10 G 10 79 79 G G A . n A 1 11 U 11 80 80 U U A . n A 1 12 G 12 81 81 G G A . n B 2 1 G 1 96 96 G G B . n B 2 2 C 2 97 97 C C B . n B 2 3 G 3 98 98 G G B . n B 2 4 A 4 99 99 A A B . n B 2 5 G 5 100 100 G G B . n B 2 6 A 6 101 101 A A B . n B 2 7 G 7 102 102 G G B . n B 2 8 U 8 103 103 U U B . n B 2 9 A 9 104 104 A A B . n B 2 10 DG 10 105 105 DG DG B . n B 2 11 G46 11 106 106 G46 G46 B . n B 2 12 C 12 107 107 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 203 203 MG MG A . D 3 MG 1 200 200 MG MG B . E 3 MG 1 201 201 MG MG B . F 3 MG 1 202 202 MG MG B . G 3 MG 1 204 204 MG MG B . H 4 HOH 1 315 315 HOH HOH A . H 4 HOH 2 316 316 HOH HOH A . H 4 HOH 3 317 317 HOH HOH A . H 4 HOH 4 318 318 HOH HOH A . H 4 HOH 5 319 319 HOH HOH A . H 4 HOH 6 323 323 HOH HOH A . H 4 HOH 7 328 328 HOH HOH A . H 4 HOH 8 329 329 HOH HOH A . H 4 HOH 9 331 331 HOH HOH A . H 4 HOH 10 335 335 HOH HOH A . H 4 HOH 11 340 340 HOH HOH A . H 4 HOH 12 350 350 HOH HOH A . H 4 HOH 13 352 352 HOH HOH A . H 4 HOH 14 353 353 HOH HOH A . H 4 HOH 15 356 356 HOH HOH A . H 4 HOH 16 358 358 HOH HOH A . H 4 HOH 17 363 363 HOH HOH A . H 4 HOH 18 367 367 HOH HOH A . H 4 HOH 19 368 368 HOH HOH A . H 4 HOH 20 369 369 HOH HOH A . H 4 HOH 21 376 376 HOH HOH A . H 4 HOH 22 378 378 HOH HOH A . H 4 HOH 23 382 382 HOH HOH A . H 4 HOH 24 384 384 HOH HOH A . H 4 HOH 25 385 385 HOH HOH A . H 4 HOH 26 386 386 HOH HOH A . H 4 HOH 27 387 387 HOH HOH A . H 4 HOH 28 388 388 HOH HOH A . H 4 HOH 29 390 390 HOH HOH A . H 4 HOH 30 391 391 HOH HOH A . H 4 HOH 31 392 392 HOH HOH A . H 4 HOH 32 394 394 HOH HOH A . H 4 HOH 33 395 395 HOH HOH A . H 4 HOH 34 397 397 HOH HOH A . H 4 HOH 35 398 398 HOH HOH A . H 4 HOH 36 399 399 HOH HOH A . H 4 HOH 37 400 400 HOH HOH A . H 4 HOH 38 402 402 HOH HOH A . H 4 HOH 39 405 405 HOH HOH A . H 4 HOH 40 406 406 HOH HOH A . H 4 HOH 41 407 407 HOH HOH A . H 4 HOH 42 409 409 HOH HOH A . H 4 HOH 43 412 412 HOH HOH A . H 4 HOH 44 413 413 HOH HOH A . H 4 HOH 45 417 417 HOH HOH A . H 4 HOH 46 421 421 HOH HOH A . H 4 HOH 47 423 423 HOH HOH A . I 4 HOH 1 300 300 HOH HOH B . I 4 HOH 2 301 301 HOH HOH B . I 4 HOH 3 302 302 HOH HOH B . I 4 HOH 4 303 303 HOH HOH B . I 4 HOH 5 304 304 HOH HOH B . I 4 HOH 6 305 305 HOH HOH B . I 4 HOH 7 306 306 HOH HOH B . I 4 HOH 8 307 307 HOH HOH B . I 4 HOH 9 308 308 HOH HOH B . I 4 HOH 10 309 309 HOH HOH B . I 4 HOH 11 310 310 HOH HOH B . I 4 HOH 12 311 311 HOH HOH B . I 4 HOH 13 312 312 HOH HOH B . I 4 HOH 14 313 313 HOH HOH B . I 4 HOH 15 314 314 HOH HOH B . I 4 HOH 16 320 320 HOH HOH B . I 4 HOH 17 321 321 HOH HOH B . I 4 HOH 18 322 322 HOH HOH B . I 4 HOH 19 324 324 HOH HOH B . I 4 HOH 20 325 325 HOH HOH B . I 4 HOH 21 326 326 HOH HOH B . I 4 HOH 22 327 327 HOH HOH B . I 4 HOH 23 330 330 HOH HOH B . I 4 HOH 24 332 332 HOH HOH B . I 4 HOH 25 333 333 HOH HOH B . I 4 HOH 26 334 334 HOH HOH B . I 4 HOH 27 336 336 HOH HOH B . I 4 HOH 28 337 337 HOH HOH B . I 4 HOH 29 338 338 HOH HOH B . I 4 HOH 30 339 339 HOH HOH B . I 4 HOH 31 341 341 HOH HOH B . I 4 HOH 32 342 342 HOH HOH B . I 4 HOH 33 343 343 HOH HOH B . I 4 HOH 34 344 344 HOH HOH B . I 4 HOH 35 345 345 HOH HOH B . I 4 HOH 36 346 346 HOH HOH B . I 4 HOH 37 347 347 HOH HOH B . I 4 HOH 38 348 348 HOH HOH B . I 4 HOH 39 349 349 HOH HOH B . I 4 HOH 40 351 351 HOH HOH B . I 4 HOH 41 354 354 HOH HOH B . I 4 HOH 42 355 355 HOH HOH B . I 4 HOH 43 357 357 HOH HOH B . I 4 HOH 44 359 359 HOH HOH B . I 4 HOH 45 360 360 HOH HOH B . I 4 HOH 46 361 361 HOH HOH B . I 4 HOH 47 362 362 HOH HOH B . I 4 HOH 48 364 364 HOH HOH B . I 4 HOH 49 365 365 HOH HOH B . I 4 HOH 50 366 366 HOH HOH B . I 4 HOH 51 370 370 HOH HOH B . I 4 HOH 52 371 371 HOH HOH B . I 4 HOH 53 372 372 HOH HOH B . I 4 HOH 54 373 373 HOH HOH B . I 4 HOH 55 374 374 HOH HOH B . I 4 HOH 56 375 375 HOH HOH B . I 4 HOH 57 377 377 HOH HOH B . I 4 HOH 58 379 379 HOH HOH B . I 4 HOH 59 380 380 HOH HOH B . I 4 HOH 60 381 381 HOH HOH B . I 4 HOH 61 383 383 HOH HOH B . I 4 HOH 62 389 389 HOH HOH B . I 4 HOH 63 393 393 HOH HOH B . I 4 HOH 64 396 396 HOH HOH B . I 4 HOH 65 401 401 HOH HOH B . I 4 HOH 66 403 403 HOH HOH B . I 4 HOH 67 404 404 HOH HOH B . I 4 HOH 68 408 408 HOH HOH B . I 4 HOH 69 410 410 HOH HOH B . I 4 HOH 70 411 411 HOH HOH B . I 4 HOH 71 414 414 HOH HOH B . I 4 HOH 72 415 415 HOH HOH B . I 4 HOH 73 416 416 HOH HOH B . I 4 HOH 74 418 418 HOH HOH B . I 4 HOH 75 419 419 HOH HOH B . I 4 HOH 76 420 420 HOH HOH B . I 4 HOH 77 422 422 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 CNS refinement 0.1 ? 2 DENZO 'data reduction' . ? 3 X-PLOR phasing . ? 4 # _cell.entry_id 354D _cell.length_a 71.184 _cell.length_b 37.654 _cell.length_c 32.944 _cell.angle_alpha 90.00 _cell.angle_beta 105.90 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 354D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 354D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.82 _exptl_crystal.density_Matthews 2.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'PRINCETON 2K' _diffrn_detector.pdbx_collection_date 1996-09-09 _diffrn_detector.details 'SILICON 111 BENDING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 354D _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F -3.000 _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 12306 _reflns.number_all ? _reflns.percent_possible_obs 90.700 _reflns.pdbx_Rmerge_I_obs 0.0550000 _reflns.pdbx_Rsym_value 0.0550000 _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.B_iso_Wilson_estimate 19.40 _reflns.pdbx_redundancy 4.600 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.500 _reflns_shell.d_res_low 1.530 _reflns_shell.percent_possible_all 54.00 _reflns_shell.Rmerge_I_obs 0.4800000 _reflns_shell.pdbx_Rsym_value 0.4800000 _reflns_shell.meanI_over_sigI_obs 2.000 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 354D _refine.ls_number_reflns_obs 12296 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 4170208.000 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs 90.500 _refine.ls_R_factor_obs 0.2020000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2020000 _refine.ls_R_factor_R_free 0.2280000 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.50 _refine.ls_number_reflns_R_free 1170 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.20 _refine.aniso_B[1][1] -5.400 _refine.aniso_B[2][2] 2.7000 _refine.aniso_B[3][3] 2.8000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.7000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THERE IS A DIASTEREOMERIC MIXTURE OF RP AND SP PHOSPHOROTHIOATE AT G106, BOTH FORMS ARE 0.5 OCCUPANCY AS ALTERNATE CONFORMATIONS. WATER MEDIATED BASE-PAIRS: N3 U 74 - HOH 329 - N2 G 102 N1 G 75 - HOH 324 - N1 A 101 O6 G 76 - HOH 330 - N7 G 100 ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 354D _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.1 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 516 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 645 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.20 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 30.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.42 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.790 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.540 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.630 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.900 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.58 _refine_ls_shell.number_reflns_R_work 1007 _refine_ls_shell.R_factor_R_work 0.2870000 _refine_ls_shell.percent_reflns_obs 58.00 _refine_ls_shell.R_factor_R_free 0.2680000 _refine_ls_shell.R_factor_R_free_error 0.03 _refine_ls_shell.percent_reflns_R_free 5.00 _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 DNA-RNA-MULTI-ENDO.PARAM DNA-RNA-MULTI-ENDO.TOP 'X-RAY DIFFRACTION' 2 MG.PARAM MG.PARAM 'X-RAY DIFFRACTION' 3 PATCH.PAR PATCH.PAR 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 354D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 354D _struct.title 'Structure of loop E FROM E. coli 5S RRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 354D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'U-RNA, DOUBLE HELIX, INTERNAL LOOP, OVERHANGING BASE, MISMATCHED, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 354D 354D ? ? ? 2 2 PDB 354D 354D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 354D A 1 ? 12 ? 354D 70 ? 81 ? 70 81 2 2 354D B 1 ? 12 ? 354D 96 ? 107 ? 96 107 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2080 ? 1 MORE -46.9 ? 1 'SSA (A^2)' 4500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 10 "O3'" ? ? ? 1_555 B G46 11 P ? ? B DG 105 B G46 106 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale2 covale one ? B G46 11 "O3'" ? ? ? 1_555 B C 12 P ? ? B G46 106 B C 107 1_555 ? ? ? ? ? ? ? 1.630 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 315 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 316 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 317 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 318 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 203 B HOH 313 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 203 B HOH 314 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc7 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 319 B MG 204 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 323 B MG 204 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc9 metalc ? ? B G 3 O6 ? ? ? 1_555 G MG . MG ? ? B G 98 B MG 204 1_555 ? ? ? ? ? ? ? 2.595 ? ? metalc10 metalc ? ? B G 5 OP2 ? ? ? 1_555 F MG . MG ? ? B G 100 B MG 202 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc11 metalc ? ? B A 6 OP2 ? ? ? 1_555 E MG . MG ? ? B A 101 B MG 201 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 300 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 301 1_555 ? ? ? ? ? ? ? 1.899 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 302 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 303 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 304 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 200 B HOH 305 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 F MG . MG ? ? B MG 201 B MG 202 1_555 ? ? ? ? ? ? ? 2.697 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 201 B HOH 306 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 201 B HOH 307 1_555 ? ? ? ? ? ? ? 2.269 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 201 B HOH 308 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 201 B HOH 309 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 201 B HOH 310 1_555 ? ? ? ? ? ? ? 1.814 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 202 B HOH 308 1_555 ? ? ? ? ? ? ? 2.407 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 202 B HOH 309 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 202 B HOH 310 1_555 ? ? ? ? ? ? ? 1.881 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 202 B HOH 311 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 202 B HOH 312 1_555 ? ? ? ? ? ? ? 2.682 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 204 B HOH 320 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 204 B HOH 321 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 204 B HOH 322 1_555 ? ? ? ? ? ? ? 2.346 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G46 11 N1 ? ? A C 70 B G46 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G46 11 O6 ? ? A C 70 B G46 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G46 11 N2 ? ? A C 70 B G46 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? A C 71 B DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? A C 71 B DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? A C 71 B DG 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B A 9 N7 ? ? A G 72 B A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 N3 ? ? ? 1_555 B A 9 N6 ? ? A G 72 B A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 8 O2 ? ? A A 73 B U 103 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog10 hydrog ? ? A A 4 N7 ? ? ? 1_555 B U 8 N3 ? ? A A 73 B U 103 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 B G 7 N1 ? ? A U 74 B G 102 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 6 O6 ? ? ? 1_555 B A 6 N6 ? ? A G 75 B A 101 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B G 5 O6 ? ? A G 76 B G 100 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog14 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 4 N7 ? ? A U 77 B A 99 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog15 hydrog ? ? A U 8 O2 ? ? ? 1_555 B A 4 N6 ? ? A U 77 B A 99 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A A 9 N6 ? ? ? 1_555 B G 3 N3 ? ? A A 78 B G 98 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A A 9 N7 ? ? ? 1_555 B G 3 N2 ? ? A A 78 B G 98 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 79 B C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 79 B C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 79 B C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 80 B G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 11 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 80 B G 96 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 316 ? 1_555 94.4 ? 2 O ? H HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 317 ? 1_555 110.2 ? 3 O ? H HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 317 ? 1_555 144.9 ? 4 O ? H HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 318 ? 1_555 119.5 ? 5 O ? H HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 318 ? 1_555 82.0 ? 6 O ? H HOH . ? A HOH 317 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 318 ? 1_555 64.3 ? 7 O ? H HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 313 ? 1_555 154.9 ? 8 O ? H HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 313 ? 1_555 85.9 ? 9 O ? H HOH . ? A HOH 317 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 313 ? 1_555 82.1 ? 10 O ? H HOH . ? A HOH 318 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 313 ? 1_555 85.5 ? 11 O ? H HOH . ? A HOH 315 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 314 ? 1_555 88.1 ? 12 O ? H HOH . ? A HOH 316 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 314 ? 1_555 124.4 ? 13 O ? H HOH . ? A HOH 317 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 314 ? 1_555 82.4 ? 14 O ? H HOH . ? A HOH 318 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 314 ? 1_555 141.9 ? 15 O ? I HOH . ? B HOH 313 ? 1_555 MG ? C MG . ? A MG 203 ? 1_555 O ? I HOH . ? B HOH 314 ? 1_555 71.4 ? 16 O ? H HOH . ? A HOH 319 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? H HOH . ? A HOH 323 ? 1_555 93.2 ? 17 O ? H HOH . ? A HOH 319 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O6 ? B G 3 ? B G 98 ? 1_555 178.8 ? 18 O ? H HOH . ? A HOH 323 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O6 ? B G 3 ? B G 98 ? 1_555 85.7 ? 19 O ? H HOH . ? A HOH 319 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 94.4 ? 20 O ? H HOH . ? A HOH 323 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 97.5 ? 21 O6 ? B G 3 ? B G 98 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 320 ? 1_555 86.0 ? 22 O ? H HOH . ? A HOH 319 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 98.2 ? 23 O ? H HOH . ? A HOH 323 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 84.8 ? 24 O6 ? B G 3 ? B G 98 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 81.4 ? 25 O ? I HOH . ? B HOH 320 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 321 ? 1_555 167.0 ? 26 O ? H HOH . ? A HOH 319 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 322 ? 1_555 87.2 ? 27 O ? H HOH . ? A HOH 323 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 322 ? 1_555 165.2 ? 28 O6 ? B G 3 ? B G 98 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 322 ? 1_555 93.8 ? 29 O ? I HOH . ? B HOH 320 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 322 ? 1_555 97.3 ? 30 O ? I HOH . ? B HOH 321 ? 1_555 MG ? G MG . ? B MG 204 ? 1_555 O ? I HOH . ? B HOH 322 ? 1_555 80.5 ? 31 OP2 ? B G 5 ? B G 100 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 308 ? 1_555 160.4 ? 32 OP2 ? B G 5 ? B G 100 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 88.4 ? 33 O ? I HOH . ? B HOH 308 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 77.3 ? 34 OP2 ? B G 5 ? B G 100 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 86.1 ? 35 O ? I HOH . ? B HOH 308 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 80.6 ? 36 O ? I HOH . ? B HOH 309 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 89.5 ? 37 OP2 ? B G 5 ? B G 100 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 311 ? 1_555 79.3 ? 38 O ? I HOH . ? B HOH 308 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 311 ? 1_555 117.5 ? 39 O ? I HOH . ? B HOH 309 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 311 ? 1_555 107.2 ? 40 O ? I HOH . ? B HOH 310 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 311 ? 1_555 157.3 ? 41 OP2 ? B G 5 ? B G 100 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 312 ? 1_555 93.3 ? 42 O ? I HOH . ? B HOH 308 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 312 ? 1_555 100.0 ? 43 O ? I HOH . ? B HOH 309 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 312 ? 1_555 175.3 ? 44 O ? I HOH . ? B HOH 310 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 312 ? 1_555 86.3 ? 45 O ? I HOH . ? B HOH 311 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 O ? I HOH . ? B HOH 312 ? 1_555 77.4 ? 46 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 MG ? F MG . ? B MG 202 ? 1_555 125.1 ? 47 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 306 ? 1_555 101.5 ? 48 MG ? F MG . ? B MG 202 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 306 ? 1_555 128.2 ? 49 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 307 ? 1_555 89.7 ? 50 MG ? F MG . ? B MG 202 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 307 ? 1_555 123.8 ? 51 O ? I HOH . ? B HOH 306 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 307 ? 1_555 71.7 ? 52 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 308 ? 1_555 179.1 ? 53 MG ? F MG . ? B MG 202 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 308 ? 1_555 55.3 ? 54 O ? I HOH . ? B HOH 306 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 308 ? 1_555 78.5 ? 55 O ? I HOH . ? B HOH 307 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 308 ? 1_555 89.4 ? 56 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 103.7 ? 57 MG ? F MG . ? B MG 202 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 52.2 ? 58 O ? I HOH . ? B HOH 306 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 141.5 ? 59 O ? I HOH . ? B HOH 307 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 79.8 ? 60 O ? I HOH . ? B HOH 308 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 309 ? 1_555 75.8 ? 61 OP2 ? B A 6 ? B A 101 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 100.8 ? 62 MG ? F MG . ? B MG 202 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 44.1 ? 63 O ? I HOH . ? B HOH 306 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 112.2 ? 64 O ? I HOH . ? B HOH 307 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 167.4 ? 65 O ? I HOH . ? B HOH 308 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 80.0 ? 66 O ? I HOH . ? B HOH 309 ? 1_555 MG ? E MG . ? B MG 201 ? 1_555 O ? I HOH . ? B HOH 310 ? 1_555 91.0 ? 67 O ? I HOH . ? B HOH 300 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 301 ? 1_555 169.9 ? 68 O ? I HOH . ? B HOH 300 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 302 ? 1_555 82.0 ? 69 O ? I HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 302 ? 1_555 93.4 ? 70 O ? I HOH . ? B HOH 300 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 303 ? 1_555 92.2 ? 71 O ? I HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 303 ? 1_555 90.4 ? 72 O ? I HOH . ? B HOH 302 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 303 ? 1_555 167.5 ? 73 O ? I HOH . ? B HOH 300 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 304 ? 1_555 96.7 ? 74 O ? I HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 304 ? 1_555 93.3 ? 75 O ? I HOH . ? B HOH 302 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 304 ? 1_555 105.4 ? 76 O ? I HOH . ? B HOH 303 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 304 ? 1_555 86.2 ? 77 O ? I HOH . ? B HOH 300 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 305 ? 1_555 80.7 ? 78 O ? I HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 305 ? 1_555 89.5 ? 79 O ? I HOH . ? B HOH 302 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 305 ? 1_555 76.3 ? 80 O ? I HOH . ? B HOH 303 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 305 ? 1_555 91.9 ? 81 O ? I HOH . ? B HOH 304 ? 1_555 MG ? D MG . ? B MG 200 ? 1_555 O ? I HOH . ? B HOH 305 ? 1_555 176.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 203 ? 7 'BINDING SITE FOR RESIDUE MG A 203' AC2 Software B MG 200 ? 6 'BINDING SITE FOR RESIDUE MG B 200' AC3 Software B MG 201 ? 7 'BINDING SITE FOR RESIDUE MG B 201' AC4 Software B MG 202 ? 7 'BINDING SITE FOR RESIDUE MG B 202' AC5 Software B MG 204 ? 6 'BINDING SITE FOR RESIDUE MG B 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 7 ? G A 76 . ? 1_555 ? 2 AC1 7 HOH H . ? HOH A 315 . ? 1_555 ? 3 AC1 7 HOH H . ? HOH A 316 . ? 1_555 ? 4 AC1 7 HOH H . ? HOH A 317 . ? 1_555 ? 5 AC1 7 HOH H . ? HOH A 318 . ? 1_555 ? 6 AC1 7 HOH I . ? HOH B 313 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH B 314 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH B 300 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH B 301 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH B 302 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH B 303 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH B 304 . ? 1_555 ? 13 AC2 6 HOH I . ? HOH B 305 . ? 1_555 ? 14 AC3 7 A B 6 ? A B 101 . ? 1_555 ? 15 AC3 7 MG F . ? MG B 202 . ? 1_555 ? 16 AC3 7 HOH I . ? HOH B 306 . ? 1_555 ? 17 AC3 7 HOH I . ? HOH B 307 . ? 1_555 ? 18 AC3 7 HOH I . ? HOH B 308 . ? 1_555 ? 19 AC3 7 HOH I . ? HOH B 309 . ? 1_555 ? 20 AC3 7 HOH I . ? HOH B 310 . ? 1_555 ? 21 AC4 7 G B 5 ? G B 100 . ? 1_555 ? 22 AC4 7 MG E . ? MG B 201 . ? 1_555 ? 23 AC4 7 HOH I . ? HOH B 308 . ? 1_555 ? 24 AC4 7 HOH I . ? HOH B 309 . ? 1_555 ? 25 AC4 7 HOH I . ? HOH B 310 . ? 1_555 ? 26 AC4 7 HOH I . ? HOH B 311 . ? 1_555 ? 27 AC4 7 HOH I . ? HOH B 312 . ? 1_555 ? 28 AC5 6 HOH H . ? HOH A 319 . ? 1_555 ? 29 AC5 6 HOH H . ? HOH A 323 . ? 1_555 ? 30 AC5 6 G B 3 ? G B 98 . ? 1_555 ? 31 AC5 6 HOH I . ? HOH B 320 . ? 1_555 ? 32 AC5 6 HOH I . ? HOH B 321 . ? 1_555 ? 33 AC5 6 HOH I . ? HOH B 322 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 375 ? ? O B HOH 411 ? ? 2.09 2 1 O A HOH 353 ? ? O A HOH 402 ? ? 2.12 3 1 O A HOH 387 ? ? O A HOH 417 ? ? 2.15 4 1 O B HOH 372 ? ? O B HOH 389 ? ? 2.17 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id G46 _pdbx_struct_mod_residue.label_seq_id 11 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id G46 _pdbx_struct_mod_residue.auth_seq_id 106 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-MONOTHIOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 G46 P P N N 148 G46 O1P O N N 149 G46 S2P S N N 150 G46 O3P O N N 151 G46 "O5'" O N N 152 G46 "C5'" C N N 153 G46 "C4'" C N R 154 G46 "O4'" O N N 155 G46 "C3'" C N S 156 G46 "O3'" O N N 157 G46 "C2'" C N R 158 G46 "C1'" C N R 159 G46 "O2'" O N N 160 G46 N9 N Y N 161 G46 C8 C Y N 162 G46 N7 N Y N 163 G46 C5 C Y N 164 G46 C6 C N N 165 G46 O6 O N N 166 G46 N1 N N N 167 G46 C2 C N N 168 G46 N2 N N N 169 G46 N3 N N N 170 G46 C4 C Y N 171 G46 H1P H N N 172 G46 HS H N N 173 G46 "H5'1" H N N 174 G46 "H5'2" H N N 175 G46 "H4'" H N N 176 G46 "H3'" H N N 177 G46 HA H N N 178 G46 "H2'" H N N 179 G46 "H1'" H N N 180 G46 HB H N N 181 G46 H8 H N N 182 G46 H1 H N N 183 G46 H2N1 H N N 184 G46 H2N2 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 MG MG MG N N 189 U OP3 O N N 190 U P P N N 191 U OP1 O N N 192 U OP2 O N N 193 U "O5'" O N N 194 U "C5'" C N N 195 U "C4'" C N R 196 U "O4'" O N N 197 U "C3'" C N S 198 U "O3'" O N N 199 U "C2'" C N R 200 U "O2'" O N N 201 U "C1'" C N R 202 U N1 N N N 203 U C2 C N N 204 U O2 O N N 205 U N3 N N N 206 U C4 C N N 207 U O4 O N N 208 U C5 C N N 209 U C6 C N N 210 U HOP3 H N N 211 U HOP2 H N N 212 U "H5'" H N N 213 U "H5''" H N N 214 U "H4'" H N N 215 U "H3'" H N N 216 U "HO3'" H N N 217 U "H2'" H N N 218 U "HO2'" H N N 219 U "H1'" H N N 220 U H3 H N N 221 U H5 H N N 222 U H6 H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DG OP3 P sing N N 76 DG OP3 HOP3 sing N N 77 DG P OP1 doub N N 78 DG P OP2 sing N N 79 DG P "O5'" sing N N 80 DG OP2 HOP2 sing N N 81 DG "O5'" "C5'" sing N N 82 DG "C5'" "C4'" sing N N 83 DG "C5'" "H5'" sing N N 84 DG "C5'" "H5''" sing N N 85 DG "C4'" "O4'" sing N N 86 DG "C4'" "C3'" sing N N 87 DG "C4'" "H4'" sing N N 88 DG "O4'" "C1'" sing N N 89 DG "C3'" "O3'" sing N N 90 DG "C3'" "C2'" sing N N 91 DG "C3'" "H3'" sing N N 92 DG "O3'" "HO3'" sing N N 93 DG "C2'" "C1'" sing N N 94 DG "C2'" "H2'" sing N N 95 DG "C2'" "H2''" sing N N 96 DG "C1'" N9 sing N N 97 DG "C1'" "H1'" sing N N 98 DG N9 C8 sing Y N 99 DG N9 C4 sing Y N 100 DG C8 N7 doub Y N 101 DG C8 H8 sing N N 102 DG N7 C5 sing Y N 103 DG C5 C6 sing N N 104 DG C5 C4 doub Y N 105 DG C6 O6 doub N N 106 DG C6 N1 sing N N 107 DG N1 C2 sing N N 108 DG N1 H1 sing N N 109 DG C2 N2 sing N N 110 DG C2 N3 doub N N 111 DG N2 H21 sing N N 112 DG N2 H22 sing N N 113 DG N3 C4 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 G46 P O1P sing N N 155 G46 P S2P sing N N 156 G46 P O3P doub N N 157 G46 P "O5'" sing N N 158 G46 O1P H1P sing N N 159 G46 S2P HS sing N N 160 G46 "O5'" "C5'" sing N N 161 G46 "C5'" "C4'" sing N N 162 G46 "C5'" "H5'1" sing N N 163 G46 "C5'" "H5'2" sing N N 164 G46 "C4'" "O4'" sing N N 165 G46 "C4'" "C3'" sing N N 166 G46 "C4'" "H4'" sing N N 167 G46 "O4'" "C1'" sing N N 168 G46 "C3'" "O3'" sing N N 169 G46 "C3'" "C2'" sing N N 170 G46 "C3'" "H3'" sing N N 171 G46 "O3'" HA sing N N 172 G46 "C2'" "C1'" sing N N 173 G46 "C2'" "O2'" sing N N 174 G46 "C2'" "H2'" sing N N 175 G46 "C1'" N9 sing N N 176 G46 "C1'" "H1'" sing N N 177 G46 "O2'" HB sing N N 178 G46 N9 C8 sing Y N 179 G46 N9 C4 sing Y N 180 G46 C8 N7 doub Y N 181 G46 C8 H8 sing N N 182 G46 N7 C5 sing Y N 183 G46 C5 C6 sing N N 184 G46 C5 C4 doub Y N 185 G46 C6 O6 doub N N 186 G46 C6 N1 sing N N 187 G46 N1 C2 sing N N 188 G46 N1 H1 sing N N 189 G46 C2 N2 sing N N 190 G46 C2 N3 doub N N 191 G46 N2 H2N1 sing N N 192 G46 N2 H2N2 sing N N 193 G46 N3 C4 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 U OP3 P sing N N 197 U OP3 HOP3 sing N N 198 U P OP1 doub N N 199 U P OP2 sing N N 200 U P "O5'" sing N N 201 U OP2 HOP2 sing N N 202 U "O5'" "C5'" sing N N 203 U "C5'" "C4'" sing N N 204 U "C5'" "H5'" sing N N 205 U "C5'" "H5''" sing N N 206 U "C4'" "O4'" sing N N 207 U "C4'" "C3'" sing N N 208 U "C4'" "H4'" sing N N 209 U "O4'" "C1'" sing N N 210 U "C3'" "O3'" sing N N 211 U "C3'" "C2'" sing N N 212 U "C3'" "H3'" sing N N 213 U "O3'" "HO3'" sing N N 214 U "C2'" "O2'" sing N N 215 U "C2'" "C1'" sing N N 216 U "C2'" "H2'" sing N N 217 U "O2'" "HO2'" sing N N 218 U "C1'" N1 sing N N 219 U "C1'" "H1'" sing N N 220 U N1 C2 sing N N 221 U N1 C6 sing N N 222 U C2 O2 doub N N 223 U C2 N3 sing N N 224 U N3 C4 sing N N 225 U N3 H3 sing N N 226 U C4 O4 doub N N 227 U C4 C5 sing N N 228 U C5 C6 doub N N 229 U C5 H5 sing N N 230 U C6 H6 sing N N 231 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 354D 'double helix' 354D 'a-form double helix' 354D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G46 11 1_555 0.036 -0.050 -0.072 4.749 -2.863 -2.171 1 A_C70:G46106_B A 70 ? B 106 ? 19 1 1 A C 2 1_555 B DG 10 1_555 0.274 -0.112 -0.184 2.743 -5.378 0.210 2 A_C71:DG105_B A 71 ? B 105 ? 19 1 1 A G 3 1_555 B A 9 1_555 6.939 -4.314 -0.206 -0.762 -2.603 -3.354 3 A_G72:A104_B A 72 ? B 104 ? 11 10 1 A A 4 1_555 B U 8 1_555 -4.320 -2.267 -0.681 -2.256 -16.357 -89.324 4 A_A73:U103_B A 73 ? B 103 ? 24 4 1 A U 5 1_555 B G 7 1_555 -4.704 0.408 -0.221 -2.394 -9.581 -52.681 5 A_U74:G102_B A 74 ? B 102 ? ? 1 1 A G 6 1_555 B A 6 1_555 -0.534 3.057 -0.348 -0.999 -6.988 -63.638 6 A_G75:A101_B A 75 ? B 101 ? ? ? 1 A G 7 1_555 B G 5 1_555 3.977 1.254 -0.124 5.979 -8.561 -66.267 7 A_G76:G100_B A 76 ? B 100 ? ? ? 1 A U 8 1_555 B A 4 1_555 4.277 -2.134 -0.721 2.297 -20.545 -95.647 8 A_U77:A99_B A 77 ? B 99 ? 24 4 1 A A 9 1_555 B G 3 1_555 -6.976 -4.202 -0.227 -0.309 -3.249 -0.434 9 A_A78:G98_B A 78 ? B 98 ? 11 9 1 A G 10 1_555 B C 2 1_555 -0.280 -0.048 -0.140 -1.630 -4.944 -1.749 10 A_G79:C97_B A 79 ? B 97 ? 19 1 1 A U 11 1_555 B G 1 1_555 2.358 -0.529 -0.183 2.962 -2.263 -3.999 11 A_U80:G96_B A 80 ? B 96 ? 28 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G46 11 1_555 A C 2 1_555 B DG 10 1_555 -0.164 -2.326 3.410 -0.615 1.533 31.319 -4.600 0.185 3.298 2.837 1.137 31.362 1 AA_C70C71:DG105G46106_BB A 70 ? B 106 ? A 71 ? B 105 ? 1 A C 2 1_555 B DG 10 1_555 A G 3 1_555 B A 9 1_555 -0.531 -0.928 3.582 2.208 3.066 61.783 -1.056 0.627 3.518 2.983 -2.148 61.887 2 AA_C71G72:A104DG105_BB A 71 ? B 105 ? A 72 ? B 104 ? 1 A G 3 1_555 B A 9 1_555 A A 4 1_555 B U 8 1_555 -4.645 -1.318 3.447 -1.921 3.346 -16.508 2.270 -17.023 3.093 -11.451 -6.573 -16.949 3 AA_G72A73:U103A104_BB A 72 ? B 104 ? A 73 ? B 103 ? 1 A A 4 1_555 B U 8 1_555 A U 5 1_555 B G 7 1_555 1.905 -2.351 3.224 2.110 -0.022 45.873 -3.012 -2.260 3.305 -0.028 -2.705 45.919 4 AA_A73U74:G102U103_BB A 73 ? B 103 ? A 74 ? B 102 ? 1 A U 5 1_555 B G 7 1_555 A G 6 1_555 B A 6 1_555 -0.488 -2.662 3.413 -1.343 7.024 46.092 -3.946 0.506 3.011 8.908 1.703 46.613 5 AA_U74G75:A101G102_BB A 74 ? B 102 ? A 75 ? B 101 ? 1 A G 6 1_555 B A 6 1_555 A G 7 1_555 B G 5 1_555 -0.469 -2.552 3.221 -1.483 3.379 46.646 -3.484 0.472 3.052 4.259 1.870 46.784 6 AA_G75G76:G100A101_BB A 75 ? B 101 ? A 76 ? B 100 ? 1 A G 7 1_555 B G 5 1_555 A U 8 1_555 B A 4 1_555 -0.880 -2.548 3.314 0.859 0.200 48.137 -3.139 1.147 3.289 0.245 -1.052 48.145 7 AA_G76U77:A99G100_BB A 76 ? B 100 ? A 77 ? B 99 ? 1 A U 8 1_555 B A 4 1_555 A A 9 1_555 B G 3 1_555 5.108 -1.521 3.464 2.245 1.815 -15.118 4.285 20.796 2.841 -6.818 8.433 -15.390 8 AA_U77A78:G98A99_BB A 77 ? B 99 ? A 78 ? B 98 ? 1 A A 9 1_555 B G 3 1_555 A G 10 1_555 B C 2 1_555 -0.013 -0.941 3.542 -1.731 2.568 61.551 -1.048 -0.074 3.504 2.508 1.690 61.621 9 AA_A78G79:C97G98_BB A 78 ? B 98 ? A 79 ? B 97 ? 1 A G 10 1_555 B C 2 1_555 A U 11 1_555 B G 1 1_555 0.088 -1.981 3.314 0.806 1.947 38.099 -3.275 -0.032 3.214 2.980 -1.234 38.155 10 AA_G79U80:G96C97_BB A 79 ? B 97 ? A 80 ? B 96 ? # _atom_sites.entry_id 354D _atom_sites.fract_transf_matrix[1][1] 0.014048 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004002 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_