data_355D
# 
_entry.id   355D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.375 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   355D         pdb_0000355d 10.2210/pdb355d/pdb 
RCSB  BDL084       ?            ?                   
WWPDB D_1000178824 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        355D 
_pdbx_database_status.recvd_initial_deposition_date   1997-10-07 
_pdbx_database_status.deposit_site                    NDB 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Hu, L.D.'        1 ? 
'Shui, X.'        2 ? 
'McFail-Isom, L.' 3 ? 
'Williams, G.G.'  4 ? 
# 
_citation.id                        primary 
_citation.title                     'The B-DNA dodecamer at high resolution reveals a spine of water on sodium.' 
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            37 
_citation.page_first                8341 
_citation.page_last                 8355 
_citation.year                      1998 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   9622486 
_citation.pdbx_database_id_DOI      10.1021/bi973073c 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Shui, X.'        1 ? 
primary 'McFail-Isom, L.' 2 ? 
primary 'Hu, G.G.'        3 ? 
primary 'Williams, L.D.'  4 ? 
# 
_cell.entry_id           355D 
_cell.length_a           25.186 
_cell.length_b           40.208 
_cell.length_c           65.656 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         355D 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
;
3663.392 2   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                                      24.305   1   ? ? ? ? 
3 non-polymer syn SPERMINE                                             202.340  1   ? ? ? ? 
4 water       nat water                                                18.015   166 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    355D 
_struct_ref.pdbx_db_accession          355D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 355D A 1 ? 12 ? 355D 1  ? 12 ? 1  12 
2 1 355D B 1 ? 12 ? 355D 13 ? 24 ? 13 24 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION'                      ? 'Mg 2'            24.305  
SPM non-polymer   . SPERMINE                             ? 'C10 H26 N4'      202.340 
# 
_exptl.entry_id          355D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.27 
_exptl_crystal.density_percent_sol   45.78 
_exptl_crystal.description           ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            298.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.50 
_exptl_crystal_grow.pdbx_details    'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 298.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER                                                                     ? ? ? 
1 2 1 MPD                                                                       ? ? ? 
1 3 1 'NA CACODYLATE'                                                           ? ? ? 
1 4 1 MGCL2                                                                     ? ? ? 
1 5 1 SPERMINE_HCL                                                              ? ? ? 
1 6 1 
;N,N'-BIS(4-AMINOBUTYL)-(2,7-ANTHROQUINONEDISULFONAMIDE DIHYDROCHLORIDE)
;
? ? ? 
1 7 2 WATER                                                                     ? ? ? 
1 8 2 MPD                                                                       ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           136.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   ADSC 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    GRAPHITE 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     355D 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            1.380 
_reflns.number_obs                   11594 
_reflns.number_all                   58307 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_CC_half                 ? 
# 
_refine.entry_id                                 355D 
_refine.ls_number_reflns_obs                     11438 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            1.400 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1970000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.1970000 
_refine.ls_R_factor_R_free                       0.2160000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      'NDB ENTRY GDL036 (PDB ENTRY 227D)' 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         14 
_refine_hist.number_atoms_solvent             160 
_refine_hist.number_atoms_total               660 
_refine_hist.d_res_high                       1.400 
_refine_hist.d_res_low                        10.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.007 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             1.42  ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   ? 
_refine_ls_shell.d_res_high                       1.40 
_refine_ls_shell.d_res_low                        1.46 
_refine_ls_shell.number_reflns_R_work             784 
_refine_ls_shell.R_factor_R_work                  0.2410000 
_refine_ls_shell.percent_reflns_obs               64.00 
_refine_ls_shell.R_factor_R_free                  ? 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.R_factor_obs                     ? 
_refine_ls_shell.number_reflns_obs                ? 
# 
_struct.entry_id                  355D 
_struct.title                     'THE B-DNA DODECAMER AT HIGH RESOLUTION' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        355D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, SODIUM FORM, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 25 A HOH 188 1_555 ? ? ? ? ? ? ?            2.043 ? ? 
metalc2  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 25 A HOH 189 1_555 ? ? ? ? ? ? ?            2.047 ? ? 
metalc3  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 25 A HOH 191 1_555 ? ? ? ? ? ? ?            2.063 ? ? 
metalc4  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 25 B HOH 187 1_555 ? ? ? ? ? ? ?            2.075 ? ? 
metalc5  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 25 B HOH 190 1_555 ? ? ? ? ? ? ?            2.074 ? ? 
metalc6  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 25 B HOH 192 1_555 ? ? ? ? ? ? ?            2.109 ? ? 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG  12 N1 ? ? A DC 1  B DG  24  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG  12 O6 ? ? A DC 1  B DG  24  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG  12 N2 ? ? A DC 1  B DG  24  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC  11 N3 ? ? A DG 2  B DC  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC  11 O2 ? ? A DG 2  B DC  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC  11 N4 ? ? A DG 2  B DC  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG  10 N1 ? ? A DC 3  B DG  22  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG  10 O6 ? ? A DC 3  B DG  22  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG  10 N2 ? ? A DC 3  B DG  22  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC  9  N3 ? ? A DG 4  B DC  21  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC  9  O2 ? ? A DG 4  B DC  21  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC  9  N4 ? ? A DG 4  B DC  21  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT  8  N3 ? ? A DA 5  B DT  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT  8  O4 ? ? A DA 5  B DT  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT  7  N3 ? ? A DA 6  B DT  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT  7  O4 ? ? A DA 6  B DT  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA  6  N1 ? ? A DT 7  B DA  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA  6  N6 ? ? A DT 7  B DA  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA  5  N1 ? ? A DT 8  B DA  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA  5  N6 ? ? A DT 8  B DA  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG  4  N1 ? ? A DC 9  B DG  16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG  4  O6 ? ? A DC 9  B DG  16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG  4  N2 ? ? A DC 9  B DG  16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC  3  N3 ? ? A DG 10 B DC  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC  3  O2 ? ? A DG 10 B DC  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC  3  N4 ? ? A DG 10 B DC  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG  2  N1 ? ? A DC 11 B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG  2  O6 ? ? A DC 11 B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG  2  N2 ? ? A DC 11 B DG  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC  1  N3 ? ? A DG 12 B DC  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC  1  O2 ? ? A DG 12 B DC  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC  1  N4 ? ? A DG 12 B DC  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B SPM 26 ? 4 'BINDING SITE FOR RESIDUE SPM B 26' 
AC2 Software A MG  25 ? 6 'BINDING SITE FOR RESIDUE MG A 25'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 4 DG  A 10 ? DG  A 10  . ? 1_555 ? 
2  AC1 4 DC  B 1  ? DC  B 13  . ? 1_555 ? 
3  AC1 4 DG  B 2  ? DG  B 14  . ? 1_555 ? 
4  AC1 4 HOH F .  ? HOH B 152 . ? 2_564 ? 
5  AC2 6 HOH E .  ? HOH A 188 . ? 1_555 ? 
6  AC2 6 HOH E .  ? HOH A 189 . ? 1_555 ? 
7  AC2 6 HOH E .  ? HOH A 191 . ? 1_555 ? 
8  AC2 6 HOH F .  ? HOH B 187 . ? 1_555 ? 
9  AC2 6 HOH F .  ? HOH B 190 . ? 1_555 ? 
10 AC2 6 HOH F .  ? HOH B 192 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          355D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    355D 
_atom_sites.fract_transf_matrix[1][1]   0.039705 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024871 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015231 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DG 2  2  2  DG G A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DA 6  6  6  DA A A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DT 8  8  8  DT T A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DG 10 10 10 DG G A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DG 12 12 12 DG G A . n 
B 1 1  DC 1  13 13 DC C B . n 
B 1 2  DG 2  14 14 DG G B . n 
B 1 3  DC 3  15 15 DC C B . n 
B 1 4  DG 4  16 16 DG G B . n 
B 1 5  DA 5  17 17 DA A B . n 
B 1 6  DA 6  18 18 DA A B . n 
B 1 7  DT 7  19 19 DT T B . n 
B 1 8  DT 8  20 20 DT T B . n 
B 1 9  DC 9  21 21 DC C B . n 
B 1 10 DG 10 22 22 DG G B . n 
B 1 11 DC 11 23 23 DC C B . n 
B 1 12 DG 12 24 24 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  25  25  MG  MO6 A . 
D 3 SPM 1  26  26  SPM SPM B . 
E 4 HOH 1  28  28  HOH HOH A . 
E 4 HOH 2  29  29  HOH HOH A . 
E 4 HOH 3  31  31  HOH HOH A . 
E 4 HOH 4  32  32  HOH HOH A . 
E 4 HOH 5  33  33  HOH HOH A . 
E 4 HOH 6  35  35  HOH HOH A . 
E 4 HOH 7  36  36  HOH HOH A . 
E 4 HOH 8  39  39  HOH HOH A . 
E 4 HOH 9  40  40  HOH HOH A . 
E 4 HOH 10 41  41  HOH HOH A . 
E 4 HOH 11 42  42  HOH HOH A . 
E 4 HOH 12 47  47  HOH HOH A . 
E 4 HOH 13 49  49  HOH HOH A . 
E 4 HOH 14 51  51  HOH HOH A . 
E 4 HOH 15 52  52  HOH HOH A . 
E 4 HOH 16 53  53  HOH HOH A . 
E 4 HOH 17 54  54  HOH HOH A . 
E 4 HOH 18 55  55  HOH HOH A . 
E 4 HOH 19 57  57  HOH HOH A . 
E 4 HOH 20 58  58  HOH HOH A . 
E 4 HOH 21 59  59  HOH HOH A . 
E 4 HOH 22 60  60  HOH HOH A . 
E 4 HOH 23 62  62  HOH HOH A . 
E 4 HOH 24 64  64  HOH HOH A . 
E 4 HOH 25 65  65  HOH HOH A . 
E 4 HOH 26 66  66  HOH HOH A . 
E 4 HOH 27 67  67  HOH HOH A . 
E 4 HOH 28 68  68  HOH HOH A . 
E 4 HOH 29 69  69  HOH HOH A . 
E 4 HOH 30 71  71  HOH HOH A . 
E 4 HOH 31 72  72  HOH HOH A . 
E 4 HOH 32 76  76  HOH HOH A . 
E 4 HOH 33 78  78  HOH HOH A . 
E 4 HOH 34 80  80  HOH HOH A . 
E 4 HOH 35 84  84  HOH HOH A . 
E 4 HOH 36 86  86  HOH HOH A . 
E 4 HOH 37 87  87  HOH HOH A . 
E 4 HOH 38 91  91  HOH HOH A . 
E 4 HOH 39 92  92  HOH HOH A . 
E 4 HOH 40 95  95  HOH HOH A . 
E 4 HOH 41 96  96  HOH HOH A . 
E 4 HOH 42 97  97  HOH HOH A . 
E 4 HOH 43 98  98  HOH HOH A . 
E 4 HOH 44 99  99  HOH HOH A . 
E 4 HOH 45 100 100 HOH HOH A . 
E 4 HOH 46 101 101 HOH HOH A . 
E 4 HOH 47 102 102 HOH HOH A . 
E 4 HOH 48 104 104 HOH HOH A . 
E 4 HOH 49 106 106 HOH HOH A . 
E 4 HOH 50 110 110 HOH HOH A . 
E 4 HOH 51 111 111 HOH HOH A . 
E 4 HOH 52 113 113 HOH HOH A . 
E 4 HOH 53 115 115 HOH HOH A . 
E 4 HOH 54 118 118 HOH HOH A . 
E 4 HOH 55 119 119 HOH HOH A . 
E 4 HOH 56 120 120 HOH HOH A . 
E 4 HOH 57 122 122 HOH HOH A . 
E 4 HOH 58 123 123 HOH HOH A . 
E 4 HOH 59 124 124 HOH HOH A . 
E 4 HOH 60 125 125 HOH HOH A . 
E 4 HOH 61 126 126 HOH HOH A . 
E 4 HOH 62 127 127 HOH HOH A . 
E 4 HOH 63 130 130 HOH HOH A . 
E 4 HOH 64 131 131 HOH HOH A . 
E 4 HOH 65 135 135 HOH HOH A . 
E 4 HOH 66 137 137 HOH HOH A . 
E 4 HOH 67 142 142 HOH HOH A . 
E 4 HOH 68 150 150 HOH HOH A . 
E 4 HOH 69 155 155 HOH HOH A . 
E 4 HOH 70 158 158 HOH HOH A . 
E 4 HOH 71 159 159 HOH HOH A . 
E 4 HOH 72 160 160 HOH HOH A . 
E 4 HOH 73 161 161 HOH HOH A . 
E 4 HOH 74 162 162 HOH HOH A . 
E 4 HOH 75 166 166 HOH HOH A . 
E 4 HOH 76 168 168 HOH HOH A . 
E 4 HOH 77 170 170 HOH HOH A . 
E 4 HOH 78 172 172 HOH HOH A . 
E 4 HOH 79 173 173 HOH HOH A . 
E 4 HOH 80 174 174 HOH HOH A . 
E 4 HOH 81 175 175 HOH HOH A . 
E 4 HOH 82 182 182 HOH HOH A . 
E 4 HOH 83 183 183 HOH HOH A . 
E 4 HOH 84 185 185 HOH HOH A . 
E 4 HOH 85 186 186 HOH HOH A . 
E 4 HOH 86 188 25  HOH MO6 A . 
E 4 HOH 87 189 25  HOH MO6 A . 
E 4 HOH 88 191 25  HOH MO6 A . 
F 4 HOH 1  27  27  HOH HOH B . 
F 4 HOH 2  30  30  HOH HOH B . 
F 4 HOH 3  34  34  HOH HOH B . 
F 4 HOH 4  37  37  HOH HOH B . 
F 4 HOH 5  38  38  HOH HOH B . 
F 4 HOH 6  43  43  HOH HOH B . 
F 4 HOH 7  44  44  HOH HOH B . 
F 4 HOH 8  45  45  HOH HOH B . 
F 4 HOH 9  46  46  HOH HOH B . 
F 4 HOH 10 48  48  HOH HOH B . 
F 4 HOH 11 50  50  HOH HOH B . 
F 4 HOH 12 56  56  HOH HOH B . 
F 4 HOH 13 61  61  HOH HOH B . 
F 4 HOH 14 63  63  HOH HOH B . 
F 4 HOH 15 70  70  HOH HOH B . 
F 4 HOH 16 73  73  HOH HOH B . 
F 4 HOH 17 74  74  HOH HOH B . 
F 4 HOH 18 75  75  HOH HOH B . 
F 4 HOH 19 77  77  HOH HOH B . 
F 4 HOH 20 79  79  HOH HOH B . 
F 4 HOH 21 81  81  HOH HOH B . 
F 4 HOH 22 82  82  HOH HOH B . 
F 4 HOH 23 83  83  HOH HOH B . 
F 4 HOH 24 85  85  HOH HOH B . 
F 4 HOH 25 88  88  HOH HOH B . 
F 4 HOH 26 89  89  HOH HOH B . 
F 4 HOH 27 90  90  HOH HOH B . 
F 4 HOH 28 93  93  HOH HOH B . 
F 4 HOH 29 94  94  HOH HOH B . 
F 4 HOH 30 103 103 HOH HOH B . 
F 4 HOH 31 105 105 HOH HOH B . 
F 4 HOH 32 107 107 HOH HOH B . 
F 4 HOH 33 108 108 HOH HOH B . 
F 4 HOH 34 109 109 HOH HOH B . 
F 4 HOH 35 112 112 HOH HOH B . 
F 4 HOH 36 114 114 HOH HOH B . 
F 4 HOH 37 116 116 HOH HOH B . 
F 4 HOH 38 117 117 HOH HOH B . 
F 4 HOH 39 121 121 HOH HOH B . 
F 4 HOH 40 128 128 HOH HOH B . 
F 4 HOH 41 129 129 HOH HOH B . 
F 4 HOH 42 132 132 HOH HOH B . 
F 4 HOH 43 133 133 HOH HOH B . 
F 4 HOH 44 134 134 HOH HOH B . 
F 4 HOH 45 136 136 HOH HOH B . 
F 4 HOH 46 138 138 HOH HOH B . 
F 4 HOH 47 139 139 HOH HOH B . 
F 4 HOH 48 140 140 HOH HOH B . 
F 4 HOH 49 141 141 HOH HOH B . 
F 4 HOH 50 143 143 HOH HOH B . 
F 4 HOH 51 144 144 HOH HOH B . 
F 4 HOH 52 145 145 HOH HOH B . 
F 4 HOH 53 146 146 HOH HOH B . 
F 4 HOH 54 147 147 HOH HOH B . 
F 4 HOH 55 148 148 HOH HOH B . 
F 4 HOH 56 149 149 HOH HOH B . 
F 4 HOH 57 151 151 HOH HOH B . 
F 4 HOH 58 152 152 HOH HOH B . 
F 4 HOH 59 153 153 HOH HOH B . 
F 4 HOH 60 154 154 HOH HOH B . 
F 4 HOH 61 156 156 HOH HOH B . 
F 4 HOH 62 157 157 HOH HOH B . 
F 4 HOH 63 163 163 HOH HOH B . 
F 4 HOH 64 164 164 HOH HOH B . 
F 4 HOH 65 165 165 HOH HOH B . 
F 4 HOH 66 167 167 HOH HOH B . 
F 4 HOH 67 169 169 HOH HOH B . 
F 4 HOH 68 171 171 HOH HOH B . 
F 4 HOH 69 176 176 HOH HOH B . 
F 4 HOH 70 177 177 HOH HOH B . 
F 4 HOH 71 178 178 HOH HOH B . 
F 4 HOH 72 179 179 HOH HOH B . 
F 4 HOH 73 180 180 HOH HOH B . 
F 4 HOH 74 181 181 HOH HOH B . 
F 4 HOH 75 184 184 HOH HOH B . 
F 4 HOH 76 187 25  HOH MO6 B . 
F 4 HOH 77 190 25  HOH MO6 B . 
F 4 HOH 78 192 25  HOH MO6 B . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O ? E HOH . ? A HOH 188 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 189 ? 1_555 92.2  ? 
2  O ? E HOH . ? A HOH 188 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 191 ? 1_555 92.6  ? 
3  O ? E HOH . ? A HOH 189 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 191 ? 1_555 85.1  ? 
4  O ? E HOH . ? A HOH 188 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 187 ? 1_555 86.0  ? 
5  O ? E HOH . ? A HOH 189 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 187 ? 1_555 177.9 ? 
6  O ? E HOH . ? A HOH 191 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 187 ? 1_555 96.3  ? 
7  O ? E HOH . ? A HOH 188 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 190 ? 1_555 173.2 ? 
8  O ? E HOH . ? A HOH 189 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 190 ? 1_555 93.9  ? 
9  O ? E HOH . ? A HOH 191 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 190 ? 1_555 91.0  ? 
10 O ? F HOH . ? B HOH 187 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 190 ? 1_555 87.8  ? 
11 O ? E HOH . ? A HOH 188 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 192 ? 1_555 90.2  ? 
12 O ? E HOH . ? A HOH 189 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 192 ? 1_555 89.7  ? 
13 O ? E HOH . ? A HOH 191 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 192 ? 1_555 174.1 ? 
14 O ? F HOH . ? B HOH 187 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 192 ? 1_555 89.1  ? 
15 O ? F HOH . ? B HOH 190 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 192 ? 1_555 86.7  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1997-10-13 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2023-08-02 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2                    
2 4 'Structure model' pdbx_initial_refinement_model 
3 4 'Structure model' pdbx_struct_conn_angle        
4 4 'Structure model' struct_conn                   
5 4 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                        
2  4 'Structure model' '_database_2.pdbx_database_accession'         
3  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'  
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'  
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.value'               
10 4 'Structure model' '_struct_conn.pdbx_dist_value'                
11 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
14 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
15 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
16 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
_software.date 
_software.type 
_software.location 
_software.language 
X-PLOR refinement        . ? 1 ? ? ? ? 
ADSC   'data collection' . ? 2 ? ? ? ? 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1 1 N 1 B SPM 26 ? C8  ? D SPM 1 C8  
2 1 N 1 B SPM 26 ? C9  ? D SPM 1 C9  
3 1 N 1 B SPM 26 ? N10 ? D SPM 1 N10 
4 1 N 1 B SPM 26 ? C11 ? D SPM 1 C11 
5 1 N 1 B SPM 26 ? C12 ? D SPM 1 C12 
6 1 N 1 B SPM 26 ? C13 ? D SPM 1 C13 
7 1 N 1 B SPM 26 ? N14 ? D SPM 1 N14 
# 
_ndb_struct_conf_na.entry_id   355D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.276  -0.140 0.073  6.930   -17.308 -0.606 1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.236 -0.182 0.491  9.341   -14.302 -2.077 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.244  -0.171 0.159  -4.433  -5.405  0.434  3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.255 -0.115 0.008  10.806  -9.449  1.012  4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 -0.037 -0.107 0.011  4.724   -15.314 1.601  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.051  -0.050 0.065  0.442   -15.001 6.233  6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 -0.037 -0.117 0.173  -0.264  -16.744 3.928  7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 -0.108 -0.120 -0.004 -1.561  -16.364 5.120  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.209  -0.127 0.003  -12.410 -10.274 -1.223 9  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 -0.106 -0.053 0.239  4.205   -9.603  3.206  10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.156  -0.130 0.208  0.283   -17.417 -1.755 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.244 -0.069 0.254  4.671   -4.954  -1.620 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 0.087  0.039  3.200 -3.216 8.520  32.731 -1.273 -0.654 3.090 14.766  
5.573  33.940 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.496  0.668  3.691 2.847  -9.055 43.879 1.792  -0.363 3.517 -11.952 
-3.757 44.844 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.138 0.593  3.000 0.967  11.300 25.114 -1.405 0.518  2.977 24.457  
-2.092 27.519 3  AA_DC3DG4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 -0.453 -0.139 3.388 -1.585 1.373  37.500 -0.402 0.489  3.396 2.133   
2.463  37.556 4  AA_DG4DA5:DT20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 0.171  -0.325 3.298 -0.330 0.459  37.520 -0.566 -0.310 3.293 0.713   
0.514  37.524 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 -0.011 -0.601 3.219 -0.311 -2.675 32.403 -0.610 -0.034 3.256 -4.783  
0.556  32.512 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.082 -0.397 3.216 1.681  -0.974 33.744 -0.529 0.408  3.218 -1.676  
-2.893 33.798 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 -0.267 -0.226 3.465 0.684  -1.686 42.136 -0.130 0.446  3.467 -2.344  
-0.951 42.174 8  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.700  0.776  3.068 -3.656 4.180  26.581 0.660  -2.360 3.031 8.967   
7.844  27.145 9  AA_DC9DG10:DC15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.311 0.360  3.371 -2.853 -9.368 41.601 1.467  1.504  3.297 -12.975 
3.951  42.688 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 -0.309 0.211  3.174 -0.679 6.692  33.310 -0.686 0.423  3.161 11.528  
1.169  33.964 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION' MG  
3 SPERMINE        SPM 
4 water           HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   227D 
_pdbx_initial_refinement_model.details          'NDB ENTRY GDL036 (PDB ENTRY 227D)' 
#