data_362D # _entry.id 362D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 362D pdb_0000362d 10.2210/pdb362d/pdb RCSB ZDF060 ? ? WWPDB D_1000178832 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1997-11-18 _pdbx_database_PDB_obs_spr.pdb_id 362D _pdbx_database_PDB_obs_spr.replace_pdb_id 347D _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 362D _pdbx_database_status.recvd_initial_deposition_date 1997-08-20 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Harper, N.A.' 1 'Brannigan, J.A.' 2 'Buck, M.' 3 'Lewis, R.J.' 4 'Moore, M.H.' 5 'Schneider, B.' 6 # _citation.id primary _citation.title 'Structure of d(TGCGCA)2 and a comparison to other DNA hexamers.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 54 _citation.page_first 1273 _citation.page_last 1284 _citation.year 1998 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10089504 _citation.pdbx_database_id_DOI 10.1107/S0907444998002807 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harper, A.' 1 ? primary 'Brannigan, J.A.' 2 ? primary 'Buck, M.' 3 ? primary 'Hewitt, L.' 4 ? primary 'Lewis, R.J.' 5 ? primary 'Moore, M.H.' 6 ? primary 'Schneider, B.' 7 ? # _cell.entry_id 362D _cell.length_a 21.162 _cell.length_b 28.670 _cell.length_c 44.335 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 362D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') ; 1809.218 2 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 2 ? ? ? ? 3 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DC)(DG)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGCGCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DA n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 362D _struct_ref.pdbx_db_accession 362D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 362D A 1 ? 6 ? 362D 1 ? 6 ? 1 6 2 1 362D B 1 ? 6 ? 362D 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 # _exptl.entry_id 362D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 120.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 362D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.000 _reflns.d_resolution_high 1.300 _reflns.number_obs 7024 _reflns.number_all ? _reflns.percent_possible_obs 99.200 _reflns.pdbx_Rmerge_I_obs 0.0430000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.000 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.300 _reflns_shell.d_res_low 1.320 _reflns_shell.percent_possible_all 87.40 _reflns_shell.Rmerge_I_obs 0.0780000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 23.60 _reflns_shell.pdbx_redundancy 4.000 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 362D _refine.ls_number_reflns_obs 7005 _refine.ls_number_reflns_all 7005 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.300 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1170000 _refine.ls_R_factor_all 0.1200000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1730000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 7005 _refine.ls_number_parameters 3018 _refine.ls_number_restraints 2782 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESTRAINED ANISOTROPIC REFINEMENT OF NON-HYDROGEN ATOMS. ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 1.4%.' _refine.pdbx_starting_model 'MODIFIED NDB ENTRY ZDF002 (PDB ENTRY 1DCG)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 362D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 138.00 _refine_analyze.occupancy_sum_non_hydrogen 332.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 243 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 335 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.065 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 362D _pdbx_refine.R_factor_all_no_cutoff 0.1170000 _pdbx_refine.R_factor_obs_no_cutoff 0.1200000 _pdbx_refine.free_R_factor_no_cutoff 0.1730000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 695.00 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 362D _struct.title 'THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 362D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 13 ? 9 'BINDING SITE FOR RESIDUE NCO A 13' AC2 Software A NCO 14 ? 9 'BINDING SITE FOR RESIDUE NCO A 14' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 4 . ? 4_545 ? 2 AC1 9 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 9 NCO D . ? NCO A 14 . ? 1_655 ? 4 AC1 9 HOH E . ? HOH A 29 . ? 1_555 ? 5 AC1 9 HOH E . ? HOH A 44 . ? 1_555 ? 6 AC1 9 HOH E . ? HOH A 71 . ? 1_555 ? 7 AC1 9 DA B 6 ? DA B 12 . ? 1_555 ? 8 AC1 9 HOH F . ? HOH B 32 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH B 74 . ? 1_555 ? 10 AC2 9 DC A 3 ? DC A 3 . ? 1_555 ? 11 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 12 AC2 9 NCO C . ? NCO A 13 . ? 1_455 ? 13 AC2 9 HOH E . ? HOH A 49 . ? 1_555 ? 14 AC2 9 DG B 2 ? DG B 8 . ? 4_455 ? 15 AC2 9 DC B 3 ? DC B 9 . ? 4_455 ? 16 AC2 9 HOH F . ? HOH B 23 . ? 1_555 ? 17 AC2 9 HOH F . ? HOH B 33 . ? 1_455 ? 18 AC2 9 HOH F . ? HOH B 54 . ? 1_455 ? # _database_PDB_matrix.entry_id 362D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 362D _atom_sites.fract_transf_matrix[1][1] 0.047255 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034880 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022556 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n B 1 1 DT 1 7 7 DT T B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DA 6 12 12 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO 1 13 13 NCO NCO A . D 2 NCO 1 14 14 NCO NCO A . E 3 HOH 1 24 24 HOH HOH A . E 3 HOH 2 25 25 HOH HOH A . E 3 HOH 3 26 26 HOH HOH A . E 3 HOH 4 27 27 HOH HOH A . E 3 HOH 5 29 29 HOH HOH A . E 3 HOH 6 31 31 HOH HOH A . E 3 HOH 7 34 34 HOH HOH A . E 3 HOH 8 35 35 HOH HOH A . E 3 HOH 9 36 36 HOH HOH A . E 3 HOH 10 37 37 HOH HOH A . E 3 HOH 11 38 38 HOH HOH A . E 3 HOH 12 41 41 HOH HOH A . E 3 HOH 13 43 43 HOH HOH A . E 3 HOH 14 44 44 HOH HOH A . E 3 HOH 15 45 45 HOH HOH A . E 3 HOH 16 46 46 HOH HOH A . E 3 HOH 17 49 49 HOH HOH A . E 3 HOH 18 51 51 HOH HOH A . E 3 HOH 19 53 53 HOH HOH A . E 3 HOH 20 55 55 HOH HOH A . E 3 HOH 21 56 56 HOH HOH A . E 3 HOH 22 60 60 HOH HOH A . E 3 HOH 23 61 61 HOH HOH A . E 3 HOH 24 63 63 HOH HOH A . E 3 HOH 25 65 65 HOH HOH A . E 3 HOH 26 68 68 HOH HOH A . E 3 HOH 27 71 71 HOH HOH A . E 3 HOH 28 76 76 HOH HOH A . E 3 HOH 29 78 78 HOH HOH A . E 3 HOH 30 79 79 HOH HOH A . E 3 HOH 31 80 80 HOH HOH A . E 3 HOH 32 83 83 HOH HOH A . E 3 HOH 33 84 84 HOH HOH A . E 3 HOH 34 85 85 HOH HOH A . E 3 HOH 35 86 86 HOH HOH A . E 3 HOH 36 91 91 HOH HOH A . F 3 HOH 1 15 15 HOH HOH B . F 3 HOH 2 16 16 HOH HOH B . F 3 HOH 3 17 17 HOH HOH B . F 3 HOH 4 18 18 HOH HOH B . F 3 HOH 5 19 19 HOH HOH B . F 3 HOH 6 20 20 HOH HOH B . F 3 HOH 7 21 21 HOH HOH B . F 3 HOH 8 22 22 HOH HOH B . F 3 HOH 9 23 23 HOH HOH B . F 3 HOH 10 28 28 HOH HOH B . F 3 HOH 11 30 30 HOH HOH B . F 3 HOH 12 32 32 HOH HOH B . F 3 HOH 13 33 33 HOH HOH B . F 3 HOH 14 39 39 HOH HOH B . F 3 HOH 15 40 40 HOH HOH B . F 3 HOH 16 42 42 HOH HOH B . F 3 HOH 17 47 47 HOH HOH B . F 3 HOH 18 48 48 HOH HOH B . F 3 HOH 19 50 50 HOH HOH B . F 3 HOH 20 52 52 HOH HOH B . F 3 HOH 21 54 54 HOH HOH B . F 3 HOH 22 57 57 HOH HOH B . F 3 HOH 23 58 58 HOH HOH B . F 3 HOH 24 59 59 HOH HOH B . F 3 HOH 25 62 62 HOH HOH B . F 3 HOH 26 64 64 HOH HOH B . F 3 HOH 27 66 66 HOH HOH B . F 3 HOH 28 67 67 HOH HOH B . F 3 HOH 29 69 69 HOH HOH B . F 3 HOH 30 70 70 HOH HOH B . F 3 HOH 31 72 72 HOH HOH B . F 3 HOH 32 73 73 HOH HOH B . F 3 HOH 33 74 74 HOH HOH B . F 3 HOH 34 75 75 HOH HOH B . F 3 HOH 35 77 77 HOH HOH B . F 3 HOH 36 81 81 HOH HOH B . F 3 HOH 37 82 82 HOH HOH B . F 3 HOH 38 87 87 HOH HOH B . F 3 HOH 39 88 88 HOH HOH B . F 3 HOH 40 89 89 HOH HOH B . F 3 HOH 41 90 90 HOH HOH B . F 3 HOH 42 92 92 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-11-20 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR anisotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR anisotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-96 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 1.582 1.512 0.070 0.007 N 2 1 "O3'" A DT 1 ? ? "C3'" A DT 1 ? ? 1.550 1.435 0.115 0.013 N 3 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.556 1.512 0.044 0.007 N 4 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.513 1.435 0.078 0.013 N 5 1 N1 A DG 2 ? ? C2 A DG 2 ? ? 1.428 1.373 0.055 0.008 N 6 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.255 1.305 -0.050 0.006 N 7 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.426 1.374 0.052 0.007 N 8 1 C6 A DG 2 ? ? O6 A DG 2 ? ? 1.293 1.237 0.056 0.009 N 9 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.400 1.335 0.065 0.009 N 10 1 C4 A DC 3 ? ? C5 A DC 3 ? ? 1.357 1.425 -0.068 0.008 N 11 1 C5 A DC 3 ? ? C6 A DC 3 ? ? 1.403 1.339 0.064 0.008 N 12 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.514 1.435 0.079 0.013 N 13 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.405 1.350 0.055 0.007 N 14 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.267 1.305 -0.038 0.006 N 15 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.382 1.335 0.047 0.007 N 16 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.558 1.512 0.046 0.007 N 17 1 "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.455 1.518 -0.063 0.010 N 18 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.423 1.344 0.079 0.006 N 19 1 C4 A DA 6 ? ? C5 A DA 6 ? ? 1.314 1.383 -0.069 0.007 N 20 1 C6 A DA 6 ? ? N1 A DA 6 ? ? 1.410 1.351 0.059 0.007 N 21 1 C5 B DT 7 ? ? C7 B DT 7 ? ? 1.600 1.496 0.104 0.006 N 22 1 C5 B DG 8 ? ? C6 B DG 8 ? ? 1.488 1.419 0.069 0.010 N 23 1 N1 B DC 9 ? ? C6 B DC 9 ? ? 1.421 1.367 0.054 0.006 N 24 1 C2 B DC 9 ? ? N3 B DC 9 ? ? 1.422 1.353 0.069 0.008 N 25 1 N3 B DG 10 ? ? C4 B DG 10 ? ? 1.408 1.350 0.058 0.007 N 26 1 C4 B DG 10 ? ? C5 B DG 10 ? ? 1.425 1.379 0.046 0.007 N 27 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.450 1.391 0.059 0.007 N 28 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.430 1.388 0.042 0.006 N 29 1 N7 B DG 10 ? ? C8 B DG 10 ? ? 1.380 1.305 0.075 0.006 N 30 1 "O3'" B DG 10 ? ? P B DC 11 ? A 1.775 1.607 0.168 0.012 Y 31 1 P B DC 11 ? A "O5'" B DC 11 ? ? 1.490 1.593 -0.103 0.010 N 32 1 P B DC 11 ? B "O5'" B DC 11 ? ? 1.757 1.593 0.164 0.010 N 33 1 C5 B DA 12 ? ? N7 B DA 12 ? ? 1.440 1.388 0.052 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 1 ? ? "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 103.52 109.40 -5.88 0.80 N 2 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.32 108.30 4.02 0.30 N 3 1 C6 A DT 1 ? ? N1 A DT 1 ? ? C2 A DT 1 ? ? 116.82 121.30 -4.48 0.50 N 4 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 119.00 114.60 4.40 0.60 N 5 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 123.16 127.20 -4.04 0.60 N 6 1 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 128.46 123.70 4.76 0.60 N 7 1 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 116.91 122.30 -5.39 0.60 N 8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.14 111.50 3.64 0.50 N 9 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.16 116.20 -7.04 0.90 N 10 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 127.04 119.90 7.14 0.70 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.79 128.60 -3.81 0.60 N 12 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.80 108.30 2.50 0.30 N 13 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 123.59 120.30 3.29 0.40 N 14 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 116.50 119.90 -3.40 0.50 N 15 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 124.83 121.90 2.93 0.40 N 16 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 116.17 121.00 -4.83 0.50 N 17 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 108.27 110.80 -2.53 0.40 N 18 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 107.43 104.30 3.13 0.50 N 19 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 103.08 114.10 -11.02 1.80 N 20 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 109.84 102.50 7.34 1.20 N 21 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 124.08 117.00 7.08 0.50 N 22 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 112.31 117.70 -5.39 0.50 N 23 1 C6 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 125.20 132.30 -7.10 0.70 N 24 1 C6 B DT 7 ? ? N1 B DT 7 ? ? C2 B DT 7 ? ? 115.18 121.30 -6.12 0.50 N 25 1 C2 B DT 7 ? ? N3 B DT 7 ? ? C4 B DT 7 ? ? 133.06 127.20 5.86 0.60 N 26 1 N3 B DT 7 ? ? C4 B DT 7 ? ? C5 B DT 7 ? ? 109.90 115.20 -5.30 0.60 N 27 1 N1 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 116.84 123.10 -6.26 0.80 N 28 1 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 127.09 122.30 4.79 0.60 N 29 1 N3 B DT 7 ? ? C4 B DT 7 ? ? O4 B DT 7 ? ? 124.37 119.90 4.47 0.60 N 30 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.90 108.30 2.60 0.30 N 31 1 C4 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 114.35 110.80 3.55 0.40 N 32 1 C5 B DG 8 ? ? N7 B DG 8 ? ? C8 B DG 8 ? ? 100.55 104.30 -3.75 0.50 N 33 1 C6 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 125.34 130.40 -5.06 0.60 N 34 1 "O4'" B DC 9 ? ? "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? 109.85 106.00 3.85 0.60 N 35 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 103.51 108.00 -4.49 0.70 N 36 1 N1 B DG 10 ? ? C2 B DG 10 ? ? N3 B DG 10 ? ? 129.19 123.90 5.29 0.60 N 37 1 N3 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 124.97 128.60 -3.63 0.50 N 38 1 C4 B DG 10 ? ? C5 B DG 10 ? ? C6 B DG 10 ? ? 122.78 118.80 3.98 0.60 N 39 1 "C3'" B DG 10 ? ? "O3'" B DG 10 ? ? P B DC 11 ? B 127.01 119.70 7.31 1.20 Y 40 1 "O3'" B DG 10 ? ? P B DC 11 ? B OP1 B DC 11 ? B 121.22 110.50 10.72 1.10 Y 41 1 "O5'" B DC 11 ? ? P B DC 11 ? A OP2 B DC 11 ? A 119.17 110.70 8.47 1.20 N 42 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 100.49 105.90 -5.41 0.80 N 43 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 118.51 121.90 -3.39 0.40 N 44 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 124.32 121.00 3.32 0.50 N 45 1 C2 B DA 12 ? ? N3 B DA 12 ? ? C4 B DA 12 ? ? 114.03 110.60 3.43 0.50 N 46 1 N9 B DA 12 ? ? C4 B DA 12 ? ? C5 B DA 12 ? ? 108.50 105.80 2.70 0.40 N # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 DG _pdbx_validate_polymer_linkage.auth_seq_id_1 10 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 DC _pdbx_validate_polymer_linkage.auth_seq_id_2 11 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 A _pdbx_validate_polymer_linkage.dist 1.77 # _ndb_struct_conf_na.entry_id 362D _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 6 1_555 0.045 -0.017 0.078 3.972 0.169 1.552 1 A_DT1:DA12_B A 1 ? B 12 ? 20 1 1 A DG 2 1_555 B DC 5 1_555 0.347 -0.063 0.215 -1.275 7.199 2.953 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.183 -0.059 0.155 -1.940 0.821 2.375 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.273 -0.034 -0.060 -1.811 -1.475 2.901 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.285 -0.050 0.031 7.873 -5.674 0.548 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DA 6 1_555 B DT 1 1_555 0.104 -0.064 -0.016 -8.651 -2.529 -1.085 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 6 1_555 A DG 2 1_555 B DC 5 1_555 0.266 5.456 3.717 3.670 2.657 -13.126 -25.053 4.529 2.405 -11.196 15.466 -13.883 1 AA_DT1DG2:DC11DA12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.360 -0.713 3.520 0.606 -0.804 -55.780 0.812 -0.347 3.514 0.859 0.648 -55.789 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.054 5.343 3.535 -0.819 -1.426 -7.737 -33.485 -2.627 4.425 10.411 -5.982 -7.910 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.185 -1.468 3.238 -0.984 -6.627 -49.101 2.224 -0.291 3.024 7.932 -1.178 -49.528 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DA 6 1_555 B DT 1 1_555 -0.164 5.145 3.848 2.147 -7.319 -8.586 -7.467 4.536 6.185 39.998 11.735 -11.480 5 AA_DC5DA6:DT7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DCG _pdbx_initial_refinement_model.details 'MODIFIED NDB ENTRY ZDF002 (PDB ENTRY 1DCG)' #