data_363D # _entry.id 363D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 363D pdb_0000363d 10.2210/pdb363d/pdb RCSB ADLS105 ? ? WWPDB D_1000178833 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2024-02-21 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_site 6 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 363D _pdbx_database_status.recvd_initial_deposition_date 1997-11-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tereshko, V.' 1 'Gryaznov, S.' 2 'Egli, M.' 3 # _citation.id primary _citation.title ;Consequences of Replacing the DNA 3'-Oxygen by an Amino Group: High-Resolution Crystal Structure of a Fully Modified N3'--> P5' Phosphoramidate DNA Dodecamer Duplex ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 120 _citation.page_first 269 _citation.page_last 283 _citation.year 1998 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tereshko, V.' 1 ? primary 'Gryaznov, S.' 2 ? primary 'Egli, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "5'-D(*(C42)P*(G38)P*(C42)P*(G38)P*(A43)P*(A43)P*(NYM)P*(NYM)P*(C42)P*(G38)P*(C42)P*DG)-3'" 3652.559 6 ? ? ? ? 2 non-polymer syn 'AMMONIUM ION' 18.038 24 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 12 ? ? ? ? 4 water nat water 18.015 200 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(C42)(G38)(C42)(G38)(A43)(A43)(NYM)(NYM)(C42)(G38)(C42)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAANNCGCG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AMMONIUM ION' NH4 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C42 n 1 2 G38 n 1 3 C42 n 1 4 G38 n 1 5 A43 n 1 6 A43 n 1 7 NYM n 1 8 NYM n 1 9 C42 n 1 10 G38 n 1 11 C42 n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A43 'DNA linking' n ;3'-AMINO DEOXYADENOSINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N6 O5 P' 330.237 C42 'DNA linking' n "3'-AMINO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N4 O6 P' 306.212 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G38 'DNA linking' n "3'-AMINO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H15 N6 O6 P' 346.236 HOH non-polymer . WATER ? 'H2 O' 18.015 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 NYM 'DNA linking' . ;3'-DEOXY-3'-AMINOTHYMIDINE MONOPHOSPHATE ; 'PHOSPHORIC ACID MONO-[3-AMINO-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL] ESTER' 'C10 H16 N3 O7 P' 321.224 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C42 1 1 1 C42 C42 A . n A 1 2 G38 2 2 2 G38 G38 A . n A 1 3 C42 3 3 3 C42 C42 A . n A 1 4 G38 4 4 4 G38 G38 A . n A 1 5 A43 5 5 5 A43 A43 A . n A 1 6 A43 6 6 6 A43 A43 A . n A 1 7 NYM 7 7 7 NYM NYM A . n A 1 8 NYM 8 8 8 NYM NYM A . n A 1 9 C42 9 9 9 C42 C42 A . n A 1 10 G38 10 10 10 G38 G38 A . n A 1 11 C42 11 11 11 C42 C42 A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 C42 1 13 13 C42 C42 B . n B 1 2 G38 2 14 14 G38 G38 B . n B 1 3 C42 3 15 15 C42 C42 B . n B 1 4 G38 4 16 16 G38 G38 B . n B 1 5 A43 5 17 17 A43 A43 B . n B 1 6 A43 6 18 18 A43 A43 B . n B 1 7 NYM 7 19 19 NYM NYM B . n B 1 8 NYM 8 20 20 NYM NYM B . n B 1 9 C42 9 21 21 C42 C42 B . n B 1 10 G38 10 22 22 G38 G38 B . n B 1 11 C42 11 23 23 C42 C42 B . n B 1 12 DG 12 24 24 DG DG B . n C 1 1 C42 1 101 101 C42 C42 C . n C 1 2 G38 2 102 102 G38 G38 C . n C 1 3 C42 3 103 103 C42 C42 C . n C 1 4 G38 4 104 104 G38 G38 C . n C 1 5 A43 5 105 105 A43 A43 C . n C 1 6 A43 6 106 106 A43 A43 C . n C 1 7 NYM 7 107 107 NYM NYM C . n C 1 8 NYM 8 108 108 NYM NYM C . n C 1 9 C42 9 109 109 C42 C42 C . n C 1 10 G38 10 110 110 G38 G38 C . n C 1 11 C42 11 111 111 C42 C42 C . n C 1 12 DG 12 112 112 DG DG C . n D 1 1 C42 1 113 113 C42 C42 D . n D 1 2 G38 2 114 114 G38 G38 D . n D 1 3 C42 3 115 115 C42 C42 D . n D 1 4 G38 4 116 116 G38 G38 D . n D 1 5 A43 5 117 117 A43 A43 D . n D 1 6 A43 6 118 118 A43 A43 D . n D 1 7 NYM 7 119 119 NYM NYM D . n D 1 8 NYM 8 120 120 NYM NYM D . n D 1 9 C42 9 121 121 C42 C42 D . n D 1 10 G38 10 122 122 G38 G38 D . n D 1 11 C42 11 123 123 C42 C42 D . n D 1 12 DG 12 124 124 DG DG D . n E 1 1 C42 1 201 201 C42 C42 E . n E 1 2 G38 2 202 202 G38 G38 E . n E 1 3 C42 3 203 203 C42 C42 E . n E 1 4 G38 4 204 204 G38 G38 E . n E 1 5 A43 5 205 205 A43 A43 E . n E 1 6 A43 6 206 206 A43 A43 E . n E 1 7 NYM 7 207 207 NYM NYM E . n E 1 8 NYM 8 208 208 NYM NYM E . n E 1 9 C42 9 209 209 C42 C42 E . n E 1 10 G38 10 210 210 G38 G38 E . n E 1 11 C42 11 211 211 C42 C42 E . n E 1 12 DG 12 212 212 DG DG E . n F 1 1 C42 1 213 213 C42 C42 F . n F 1 2 G38 2 214 214 G38 G38 F . n F 1 3 C42 3 215 215 C42 C42 F . n F 1 4 G38 4 216 216 G38 G38 F . n F 1 5 A43 5 217 217 A43 A43 F . n F 1 6 A43 6 218 218 A43 A43 F . n F 1 7 NYM 7 219 219 NYM NYM F . n F 1 8 NYM 8 220 220 NYM NYM F . n F 1 9 C42 9 221 221 C42 C42 F . n F 1 10 G38 10 222 222 G38 G38 F . n F 1 11 C42 11 223 223 C42 C42 F . n F 1 12 DG 12 224 224 DG DG F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NH4 1 237 237 NH4 NH4 A . H 2 NH4 1 239 239 NH4 NH4 A . I 3 CL 1 255 255 CL CL A . J 2 NH4 1 226 226 NH4 NH4 A . K 2 NH4 1 228 228 NH4 NH4 A . L 3 CL 1 250 250 CL CL A . M 2 NH4 1 238 238 NH4 NH4 B . N 2 NH4 1 240 240 NH4 NH4 B . O 3 CL 1 256 256 CL CL B . P 2 NH4 1 225 225 NH4 NH4 B . Q 2 NH4 1 227 227 NH4 NH4 B . R 3 CL 1 249 249 CL CL B . S 2 NH4 1 243 243 NH4 NH4 C . T 2 NH4 1 245 245 NH4 NH4 C . U 3 CL 1 259 259 CL CL C . V 2 NH4 1 244 244 NH4 NH4 C . W 2 NH4 1 248 248 NH4 NH4 C . X 3 CL 1 260 260 CL CL C . Y 2 NH4 1 242 242 NH4 NH4 D . Z 2 NH4 1 246 246 NH4 NH4 D . AA 3 CL 1 258 258 CL CL D . BA 2 NH4 1 241 241 NH4 NH4 D . CA 2 NH4 1 247 247 NH4 NH4 D . DA 3 CL 1 257 257 CL CL D . EA 2 NH4 1 229 229 NH4 NH4 E . FA 2 NH4 1 235 235 NH4 NH4 E . GA 3 CL 1 251 251 CL CL E . HA 2 NH4 1 230 230 NH4 NH4 E . IA 2 NH4 1 234 234 NH4 NH4 E . JA 3 CL 1 252 252 CL CL E . KA 2 NH4 1 232 232 NH4 NH4 F . LA 2 NH4 1 231 231 NH4 NH4 F . MA 2 NH4 1 236 236 NH4 NH4 F . NA 3 CL 1 254 254 CL CL F . OA 2 NH4 1 233 233 NH4 NH4 F . PA 3 CL 1 253 253 CL CL F . QA 4 HOH 1 305 305 HOH HOH A . QA 4 HOH 2 306 306 HOH HOH A . QA 4 HOH 3 307 307 HOH HOH A . QA 4 HOH 4 310 310 HOH HOH A . QA 4 HOH 5 311 311 HOH HOH A . QA 4 HOH 6 312 312 HOH HOH A . QA 4 HOH 7 314 314 HOH HOH A . QA 4 HOH 8 316 316 HOH HOH A . QA 4 HOH 9 318 318 HOH HOH A . QA 4 HOH 10 319 319 HOH HOH A . QA 4 HOH 11 320 320 HOH HOH A . QA 4 HOH 12 321 321 HOH HOH A . QA 4 HOH 13 323 323 HOH HOH A . QA 4 HOH 14 326 326 HOH HOH A . QA 4 HOH 15 328 328 HOH HOH A . QA 4 HOH 16 329 329 HOH HOH A . QA 4 HOH 17 395 395 HOH HOH A . QA 4 HOH 18 397 397 HOH HOH A . QA 4 HOH 19 400 400 HOH HOH A . QA 4 HOH 20 403 403 HOH HOH A . QA 4 HOH 21 404 404 HOH HOH A . QA 4 HOH 22 405 405 HOH HOH A . QA 4 HOH 23 406 406 HOH HOH A . QA 4 HOH 24 410 410 HOH HOH A . QA 4 HOH 25 411 411 HOH HOH A . QA 4 HOH 26 414 414 HOH HOH A . QA 4 HOH 27 415 415 HOH HOH A . QA 4 HOH 28 417 417 HOH HOH A . QA 4 HOH 29 419 419 HOH HOH A . QA 4 HOH 30 423 423 HOH HOH A . QA 4 HOH 31 425 425 HOH HOH A . QA 4 HOH 32 426 426 HOH HOH A . QA 4 HOH 33 428 428 HOH HOH A . QA 4 HOH 34 431 431 HOH HOH A . QA 4 HOH 35 492 492 HOH HOH A . QA 4 HOH 36 499 499 HOH HOH A . RA 4 HOH 1 301 301 HOH HOH B . RA 4 HOH 2 302 302 HOH HOH B . RA 4 HOH 3 303 303 HOH HOH B . RA 4 HOH 4 304 304 HOH HOH B . RA 4 HOH 5 308 308 HOH HOH B . RA 4 HOH 6 309 309 HOH HOH B . RA 4 HOH 7 313 313 HOH HOH B . RA 4 HOH 8 315 315 HOH HOH B . RA 4 HOH 9 317 317 HOH HOH B . RA 4 HOH 10 322 322 HOH HOH B . RA 4 HOH 11 324 324 HOH HOH B . RA 4 HOH 12 325 325 HOH HOH B . RA 4 HOH 13 327 327 HOH HOH B . RA 4 HOH 14 330 330 HOH HOH B . RA 4 HOH 15 331 331 HOH HOH B . RA 4 HOH 16 386 386 HOH HOH B . RA 4 HOH 17 394 394 HOH HOH B . RA 4 HOH 18 401 401 HOH HOH B . RA 4 HOH 19 407 407 HOH HOH B . RA 4 HOH 20 408 408 HOH HOH B . RA 4 HOH 21 409 409 HOH HOH B . RA 4 HOH 22 412 412 HOH HOH B . RA 4 HOH 23 413 413 HOH HOH B . RA 4 HOH 24 416 416 HOH HOH B . RA 4 HOH 25 420 420 HOH HOH B . RA 4 HOH 26 421 421 HOH HOH B . RA 4 HOH 27 422 422 HOH HOH B . RA 4 HOH 28 424 424 HOH HOH B . RA 4 HOH 29 427 427 HOH HOH B . RA 4 HOH 30 429 429 HOH HOH B . RA 4 HOH 31 430 430 HOH HOH B . RA 4 HOH 32 493 493 HOH HOH B . RA 4 HOH 33 495 495 HOH HOH B . RA 4 HOH 34 498 498 HOH HOH B . SA 4 HOH 1 385 385 HOH HOH C . SA 4 HOH 2 391 391 HOH HOH C . SA 4 HOH 3 392 392 HOH HOH C . SA 4 HOH 4 396 396 HOH HOH C . SA 4 HOH 5 398 398 HOH HOH C . SA 4 HOH 6 418 418 HOH HOH C . SA 4 HOH 7 440 440 HOH HOH C . SA 4 HOH 8 441 441 HOH HOH C . SA 4 HOH 9 442 442 HOH HOH C . SA 4 HOH 10 443 443 HOH HOH C . SA 4 HOH 11 444 444 HOH HOH C . SA 4 HOH 12 445 445 HOH HOH C . SA 4 HOH 13 446 446 HOH HOH C . SA 4 HOH 14 448 448 HOH HOH C . SA 4 HOH 15 449 449 HOH HOH C . SA 4 HOH 16 450 450 HOH HOH C . SA 4 HOH 17 452 452 HOH HOH C . SA 4 HOH 18 454 454 HOH HOH C . SA 4 HOH 19 456 456 HOH HOH C . SA 4 HOH 20 457 457 HOH HOH C . SA 4 HOH 21 459 459 HOH HOH C . SA 4 HOH 22 462 462 HOH HOH C . SA 4 HOH 23 463 463 HOH HOH C . SA 4 HOH 24 465 465 HOH HOH C . SA 4 HOH 25 466 466 HOH HOH C . SA 4 HOH 26 467 467 HOH HOH C . SA 4 HOH 27 470 470 HOH HOH C . SA 4 HOH 28 483 483 HOH HOH C . SA 4 HOH 29 484 484 HOH HOH C . SA 4 HOH 30 486 486 HOH HOH C . TA 4 HOH 1 393 393 HOH HOH D . TA 4 HOH 2 432 432 HOH HOH D . TA 4 HOH 3 433 433 HOH HOH D . TA 4 HOH 4 434 434 HOH HOH D . TA 4 HOH 5 435 435 HOH HOH D . TA 4 HOH 6 436 436 HOH HOH D . TA 4 HOH 7 437 437 HOH HOH D . TA 4 HOH 8 438 438 HOH HOH D . TA 4 HOH 9 439 439 HOH HOH D . TA 4 HOH 10 447 447 HOH HOH D . TA 4 HOH 11 451 451 HOH HOH D . TA 4 HOH 12 453 453 HOH HOH D . TA 4 HOH 13 455 455 HOH HOH D . TA 4 HOH 14 458 458 HOH HOH D . TA 4 HOH 15 460 460 HOH HOH D . TA 4 HOH 16 461 461 HOH HOH D . TA 4 HOH 17 464 464 HOH HOH D . TA 4 HOH 18 468 468 HOH HOH D . TA 4 HOH 19 469 469 HOH HOH D . TA 4 HOH 20 471 471 HOH HOH D . TA 4 HOH 21 472 472 HOH HOH D . TA 4 HOH 22 473 473 HOH HOH D . TA 4 HOH 23 474 474 HOH HOH D . TA 4 HOH 24 475 475 HOH HOH D . TA 4 HOH 25 476 476 HOH HOH D . TA 4 HOH 26 477 477 HOH HOH D . TA 4 HOH 27 478 478 HOH HOH D . TA 4 HOH 28 479 479 HOH HOH D . TA 4 HOH 29 480 480 HOH HOH D . TA 4 HOH 30 481 481 HOH HOH D . TA 4 HOH 31 482 482 HOH HOH D . TA 4 HOH 32 485 485 HOH HOH D . TA 4 HOH 33 487 487 HOH HOH D . TA 4 HOH 34 488 488 HOH HOH D . TA 4 HOH 35 497 497 HOH HOH D . TA 4 HOH 36 500 500 HOH HOH D . UA 4 HOH 1 332 332 HOH HOH E . UA 4 HOH 2 333 333 HOH HOH E . UA 4 HOH 3 334 334 HOH HOH E . UA 4 HOH 4 335 335 HOH HOH E . UA 4 HOH 5 336 336 HOH HOH E . UA 4 HOH 6 337 337 HOH HOH E . UA 4 HOH 7 338 338 HOH HOH E . UA 4 HOH 8 339 339 HOH HOH E . UA 4 HOH 9 347 347 HOH HOH E . UA 4 HOH 10 351 351 HOH HOH E . UA 4 HOH 11 353 353 HOH HOH E . UA 4 HOH 12 355 355 HOH HOH E . UA 4 HOH 13 358 358 HOH HOH E . UA 4 HOH 14 360 360 HOH HOH E . UA 4 HOH 15 361 361 HOH HOH E . UA 4 HOH 16 364 364 HOH HOH E . UA 4 HOH 17 368 368 HOH HOH E . UA 4 HOH 18 369 369 HOH HOH E . UA 4 HOH 19 371 371 HOH HOH E . UA 4 HOH 20 372 372 HOH HOH E . UA 4 HOH 21 373 373 HOH HOH E . UA 4 HOH 22 374 374 HOH HOH E . UA 4 HOH 23 375 375 HOH HOH E . UA 4 HOH 24 376 376 HOH HOH E . UA 4 HOH 25 377 377 HOH HOH E . UA 4 HOH 26 378 378 HOH HOH E . UA 4 HOH 27 379 379 HOH HOH E . UA 4 HOH 28 380 380 HOH HOH E . UA 4 HOH 29 381 381 HOH HOH E . UA 4 HOH 30 382 382 HOH HOH E . UA 4 HOH 31 383 383 HOH HOH E . UA 4 HOH 32 387 387 HOH HOH E . UA 4 HOH 33 389 389 HOH HOH E . UA 4 HOH 34 390 390 HOH HOH E . UA 4 HOH 35 399 399 HOH HOH E . UA 4 HOH 36 402 402 HOH HOH E . UA 4 HOH 37 491 491 HOH HOH E . VA 4 HOH 1 340 340 HOH HOH F . VA 4 HOH 2 341 341 HOH HOH F . VA 4 HOH 3 342 342 HOH HOH F . VA 4 HOH 4 343 343 HOH HOH F . VA 4 HOH 5 344 344 HOH HOH F . VA 4 HOH 6 345 345 HOH HOH F . VA 4 HOH 7 346 346 HOH HOH F . VA 4 HOH 8 348 348 HOH HOH F . VA 4 HOH 9 349 349 HOH HOH F . VA 4 HOH 10 350 350 HOH HOH F . VA 4 HOH 11 352 352 HOH HOH F . VA 4 HOH 12 354 354 HOH HOH F . VA 4 HOH 13 356 356 HOH HOH F . VA 4 HOH 14 357 357 HOH HOH F . VA 4 HOH 15 359 359 HOH HOH F . VA 4 HOH 16 362 362 HOH HOH F . VA 4 HOH 17 363 363 HOH HOH F . VA 4 HOH 18 365 365 HOH HOH F . VA 4 HOH 19 366 366 HOH HOH F . VA 4 HOH 20 367 367 HOH HOH F . VA 4 HOH 21 370 370 HOH HOH F . VA 4 HOH 22 384 384 HOH HOH F . VA 4 HOH 23 388 388 HOH HOH F . VA 4 HOH 24 489 489 HOH HOH F . VA 4 HOH 25 490 490 HOH HOH F . VA 4 HOH 26 494 494 HOH HOH F . VA 4 HOH 27 496 496 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 363D _cell.length_a 40.150 _cell.length_b 40.150 _cell.length_c 304.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 108 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 363D _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 363D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 NH4CL ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA HEPES' ? ? ? 1 5 1 1,6-HEXANEDIOL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 NH4CL ? ? ? 1 8 2 MGCL2 ? ? ? 1 9 2 'NA HEPES' ? ? ? 1 10 2 1,6-HEXANEDIOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 290.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1996-04-01 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 363D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 6737 _reflns.number_all ? _reflns.percent_possible_obs 98.400 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.000 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 11.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 363D _refine.ls_number_reflns_obs 5854 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 86.900 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all 0.2 _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 15.00 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ;THE CRYSTAL IS A PRECISE MEROHEDRAL TWIN AND THE COORDINATES REPRESENT ONE COLUMN CONSISTING OF THREE DODECAMER DUPLEXES (ALL ATOMS WITH OCCUPANCY 0.5, HALF THE WATERS HAVE OCCUPANCY 1.0, THE OTHER HALF ZERO). TOTAL NUMBER OF SOLVENT ATOMS REFERS TO R3 ASYMMETRIC UNIT. ; _refine.pdbx_starting_model 'A-FORM DUPLEX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1524 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 200 _refine_hist.number_atoms_total 1760 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 363D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 363D _struct.title ;High-resolution crystal structure of a fully modified N3'-> P5' phosphoramidate DNA dodecamer duplex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 363D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 2 ? Q N N 2 ? R N N 3 ? S N N 2 ? T N N 2 ? U N N 3 ? V N N 2 ? W N N 2 ? X N N 3 ? Y N N 2 ? Z N N 2 ? AA N N 3 ? BA N N 2 ? CA N N 2 ? DA N N 3 ? EA N N 2 ? FA N N 2 ? GA N N 3 ? HA N N 2 ? IA N N 2 ? JA N N 3 ? KA N N 2 ? LA N N 2 ? MA N N 2 ? NA N N 3 ? OA N N 2 ? PA N N 3 ? QA N N 4 ? RA N N 4 ? SA N N 4 ? TA N N 4 ? UA N N 4 ? VA N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 363D _struct_ref.pdbx_db_accession 363D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 363D A 1 ? 12 ? 363D 1 ? 12 ? 1 12 2 1 363D B 1 ? 12 ? 363D 13 ? 24 ? 13 24 3 1 363D C 1 ? 12 ? 363D 101 ? 112 ? 101 112 4 1 363D D 1 ? 12 ? 363D 113 ? 124 ? 113 124 5 1 363D E 1 ? 12 ? 363D 201 ? 212 ? 201 212 6 1 363D F 1 ? 12 ? 363D 213 ? 224 ? 213 224 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,I,J,K,L,M,N,O,P,Q,R,QA,RA 2 1 C,D,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,SA,TA 3 1 E,F,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,UA,VA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A C42 1 N ? ? ? 1_555 A G38 2 PA ? ? A C42 1 A G38 2 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale one ? A G38 2 N ? ? ? 1_555 A C42 3 P ? ? A G38 2 A C42 3 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale3 covale one ? A C42 3 N ? ? ? 1_555 A G38 4 PA ? ? A C42 3 A G38 4 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale4 covale one ? A G38 4 N ? ? ? 1_555 A A43 5 P ? ? A G38 4 A A43 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale5 covale one ? A A43 5 N ? ? ? 1_555 A A43 6 P ? ? A A43 5 A A43 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale none ? A A43 6 N ? ? ? 1_555 A NYM 7 P1 ? ? A A43 6 A NYM 7 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale7 covale none ? A NYM 7 "N3'" ? ? ? 1_555 A NYM 8 P1 ? ? A NYM 7 A NYM 8 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale one ? A NYM 8 "N3'" ? ? ? 1_555 A C42 9 P ? ? A NYM 8 A C42 9 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale9 covale one ? A C42 9 N ? ? ? 1_555 A G38 10 PA ? ? A C42 9 A G38 10 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale10 covale one ? A G38 10 N ? ? ? 1_555 A C42 11 P ? ? A G38 10 A C42 11 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale11 covale one ? A C42 11 N ? ? ? 1_555 A DG 12 P ? ? A C42 11 A DG 12 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale12 covale one ? B C42 1 N ? ? ? 1_555 B G38 2 PA ? ? B C42 13 B G38 14 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale13 covale one ? B G38 2 N ? ? ? 1_555 B C42 3 P ? ? B G38 14 B C42 15 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale14 covale one ? B C42 3 N ? ? ? 1_555 B G38 4 PA ? ? B C42 15 B G38 16 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale15 covale one ? B G38 4 N ? ? ? 1_555 B A43 5 P ? ? B G38 16 B A43 17 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale16 covale one ? B A43 5 N ? ? ? 1_555 B A43 6 P ? ? B A43 17 B A43 18 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale17 covale none ? B A43 6 N ? ? ? 1_555 B NYM 7 P1 ? ? B A43 18 B NYM 19 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale18 covale none ? B NYM 7 "N3'" ? ? ? 1_555 B NYM 8 P1 ? ? B NYM 19 B NYM 20 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale19 covale one ? B NYM 8 "N3'" ? ? ? 1_555 B C42 9 P ? ? B NYM 20 B C42 21 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale20 covale one ? B C42 9 N ? ? ? 1_555 B G38 10 PA ? ? B C42 21 B G38 22 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale21 covale one ? B G38 10 N ? ? ? 1_555 B C42 11 P ? ? B G38 22 B C42 23 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale22 covale one ? B C42 11 N ? ? ? 1_555 B DG 12 P ? ? B C42 23 B DG 24 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale23 covale one ? C C42 1 N ? ? ? 1_555 C G38 2 PA ? ? C C42 101 C G38 102 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale24 covale one ? C G38 2 N ? ? ? 1_555 C C42 3 P ? ? C G38 102 C C42 103 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale25 covale one ? C C42 3 N ? ? ? 1_555 C G38 4 PA ? ? C C42 103 C G38 104 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale26 covale one ? C G38 4 N ? ? ? 1_555 C A43 5 P ? ? C G38 104 C A43 105 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale27 covale one ? C A43 5 N ? ? ? 1_555 C A43 6 P ? ? C A43 105 C A43 106 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale28 covale none ? C A43 6 N ? ? ? 1_555 C NYM 7 P1 ? ? C A43 106 C NYM 107 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale29 covale none ? C NYM 7 "N3'" ? ? ? 1_555 C NYM 8 P1 ? ? C NYM 107 C NYM 108 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale30 covale one ? C NYM 8 "N3'" ? ? ? 1_555 C C42 9 P ? ? C NYM 108 C C42 109 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale31 covale one ? C C42 9 N ? ? ? 1_555 C G38 10 PA ? ? C C42 109 C G38 110 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale32 covale one ? C G38 10 N ? ? ? 1_555 C C42 11 P ? ? C G38 110 C C42 111 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale33 covale one ? C C42 11 N ? ? ? 1_555 C DG 12 P ? ? C C42 111 C DG 112 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale34 covale one ? D C42 1 N ? ? ? 1_555 D G38 2 PA ? ? D C42 113 D G38 114 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale35 covale one ? D G38 2 N ? ? ? 1_555 D C42 3 P ? ? D G38 114 D C42 115 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale36 covale one ? D C42 3 N ? ? ? 1_555 D G38 4 PA ? ? D C42 115 D G38 116 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale37 covale one ? D G38 4 N ? ? ? 1_555 D A43 5 P ? ? D G38 116 D A43 117 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale38 covale one ? D A43 5 N ? ? ? 1_555 D A43 6 P ? ? D A43 117 D A43 118 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale39 covale none ? D A43 6 N ? ? ? 1_555 D NYM 7 P1 ? ? D A43 118 D NYM 119 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale40 covale none ? D NYM 7 "N3'" ? ? ? 1_555 D NYM 8 P1 ? ? D NYM 119 D NYM 120 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale41 covale one ? D NYM 8 "N3'" ? ? ? 1_555 D C42 9 P ? ? D NYM 120 D C42 121 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale42 covale one ? D C42 9 N ? ? ? 1_555 D G38 10 PA ? ? D C42 121 D G38 122 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale43 covale one ? D G38 10 N ? ? ? 1_555 D C42 11 P ? ? D G38 122 D C42 123 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale44 covale one ? D C42 11 N ? ? ? 1_555 D DG 12 P ? ? D C42 123 D DG 124 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale45 covale one ? E C42 1 N ? ? ? 1_555 E G38 2 PA ? ? E C42 201 E G38 202 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale46 covale one ? E G38 2 N ? ? ? 1_555 E C42 3 P ? ? E G38 202 E C42 203 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale47 covale one ? E C42 3 N ? ? ? 1_555 E G38 4 PA ? ? E C42 203 E G38 204 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale48 covale one ? E G38 4 N ? ? ? 1_555 E A43 5 P ? ? E G38 204 E A43 205 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale49 covale one ? E A43 5 N ? ? ? 1_555 E A43 6 P ? ? E A43 205 E A43 206 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale50 covale none ? E A43 6 N ? ? ? 1_555 E NYM 7 P1 ? ? E A43 206 E NYM 207 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale51 covale none ? E NYM 7 "N3'" ? ? ? 1_555 E NYM 8 P1 ? ? E NYM 207 E NYM 208 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale52 covale one ? E NYM 8 "N3'" ? ? ? 1_555 E C42 9 P ? ? E NYM 208 E C42 209 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale53 covale one ? E C42 9 N ? ? ? 1_555 E G38 10 PA ? ? E C42 209 E G38 210 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale54 covale one ? E G38 10 N ? ? ? 1_555 E C42 11 P ? ? E G38 210 E C42 211 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale55 covale one ? E C42 11 N ? ? ? 1_555 E DG 12 P ? ? E C42 211 E DG 212 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale56 covale one ? F C42 1 N ? ? ? 1_555 F G38 2 PA ? ? F C42 213 F G38 214 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale57 covale one ? F G38 2 N ? ? ? 1_555 F C42 3 P ? ? F G38 214 F C42 215 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale58 covale one ? F C42 3 N ? ? ? 1_555 F G38 4 PA ? ? F C42 215 F G38 216 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale59 covale one ? F G38 4 N ? ? ? 1_555 F A43 5 P ? ? F G38 216 F A43 217 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale60 covale one ? F A43 5 N ? ? ? 1_555 F A43 6 P ? ? F A43 217 F A43 218 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale61 covale none ? F A43 6 N ? ? ? 1_555 F NYM 7 P1 ? ? F A43 218 F NYM 219 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale62 covale none ? F NYM 7 "N3'" ? ? ? 1_555 F NYM 8 P1 ? ? F NYM 219 F NYM 220 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale63 covale one ? F NYM 8 "N3'" ? ? ? 1_555 F C42 9 P ? ? F NYM 220 F C42 221 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale64 covale one ? F C42 9 N ? ? ? 1_555 F G38 10 PA ? ? F C42 221 F G38 222 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale65 covale one ? F G38 10 N ? ? ? 1_555 F C42 11 P ? ? F G38 222 F C42 223 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale66 covale one ? F C42 11 N ? ? ? 1_555 F DG 12 P ? ? F C42 223 F DG 224 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A C42 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A C42 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C42 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A C42 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C42 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A C42 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G38 2 N1 ? ? ? 1_555 B C42 11 N3 ? ? A G38 2 B C42 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G38 2 N2 ? ? ? 1_555 B C42 11 O2 ? ? A G38 2 B C42 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G38 2 O6 ? ? ? 1_555 B C42 11 N4 ? ? A G38 2 B C42 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C42 3 N3 ? ? ? 1_555 B G38 10 N1 ? ? A C42 3 B G38 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C42 3 N4 ? ? ? 1_555 B G38 10 O6 ? ? A C42 3 B G38 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C42 3 O2 ? ? ? 1_555 B G38 10 N2 ? ? A C42 3 B G38 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G38 4 N1 ? ? ? 1_555 B C42 9 N3 ? ? A G38 4 B C42 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G38 4 N2 ? ? ? 1_555 B C42 9 O2 ? ? A G38 4 B C42 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G38 4 O6 ? ? ? 1_555 B C42 9 N4 ? ? A G38 4 B C42 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C42 9 N3 ? ? ? 1_555 B G38 4 N1 ? ? A C42 9 B G38 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C42 9 N4 ? ? ? 1_555 B G38 4 O6 ? ? A C42 9 B G38 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C42 9 O2 ? ? ? 1_555 B G38 4 N2 ? ? A C42 9 B G38 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G38 10 N1 ? ? ? 1_555 B C42 3 N3 ? ? A G38 10 B C42 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G38 10 N2 ? ? ? 1_555 B C42 3 O2 ? ? A G38 10 B C42 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G38 10 O6 ? ? ? 1_555 B C42 3 N4 ? ? A G38 10 B C42 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C42 11 N3 ? ? ? 1_555 B G38 2 N1 ? ? A C42 11 B G38 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C42 11 N4 ? ? ? 1_555 B G38 2 O6 ? ? A C42 11 B G38 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C42 11 O2 ? ? ? 1_555 B G38 2 N2 ? ? A C42 11 B G38 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B C42 1 N3 ? ? A DG 12 B C42 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B C42 1 O2 ? ? A DG 12 B C42 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B C42 1 N4 ? ? A DG 12 B C42 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C C42 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C C42 101 D DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C42 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C C42 101 D DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C42 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C C42 101 D DG 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G38 2 N1 ? ? ? 1_555 D C42 11 N3 ? ? C G38 102 D C42 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G38 2 N2 ? ? ? 1_555 D C42 11 O2 ? ? C G38 102 D C42 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G38 2 O6 ? ? ? 1_555 D C42 11 N4 ? ? C G38 102 D C42 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C42 3 N3 ? ? ? 1_555 D G38 10 N1 ? ? C C42 103 D G38 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C42 3 N4 ? ? ? 1_555 D G38 10 O6 ? ? C C42 103 D G38 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C42 3 O2 ? ? ? 1_555 D G38 10 N2 ? ? C C42 103 D G38 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G38 4 N1 ? ? ? 1_555 D C42 9 N3 ? ? C G38 104 D C42 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G38 4 N2 ? ? ? 1_555 D C42 9 O2 ? ? C G38 104 D C42 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G38 4 O6 ? ? ? 1_555 D C42 9 N4 ? ? C G38 104 D C42 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C42 9 N3 ? ? ? 1_555 D G38 4 N1 ? ? C C42 109 D G38 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C42 9 N4 ? ? ? 1_555 D G38 4 O6 ? ? C C42 109 D G38 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C42 9 O2 ? ? ? 1_555 D G38 4 N2 ? ? C C42 109 D G38 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G38 10 N1 ? ? ? 1_555 D C42 3 N3 ? ? C G38 110 D C42 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G38 10 N2 ? ? ? 1_555 D C42 3 O2 ? ? C G38 110 D C42 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G38 10 O6 ? ? ? 1_555 D C42 3 N4 ? ? C G38 110 D C42 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C42 11 N3 ? ? ? 1_555 D G38 2 N1 ? ? C C42 111 D G38 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C42 11 N4 ? ? ? 1_555 D G38 2 O6 ? ? C C42 111 D G38 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C42 11 O2 ? ? ? 1_555 D G38 2 N2 ? ? C C42 111 D G38 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D C42 1 N3 ? ? C DG 112 D C42 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D C42 1 O2 ? ? C DG 112 D C42 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D C42 1 N4 ? ? C DG 112 D C42 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E C42 1 N3 ? ? ? 1_555 F DG 12 N1 ? ? E C42 201 F DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E C42 1 N4 ? ? ? 1_555 F DG 12 O6 ? ? E C42 201 F DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E C42 1 O2 ? ? ? 1_555 F DG 12 N2 ? ? E C42 201 F DG 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E G38 2 N1 ? ? ? 1_555 F C42 11 N3 ? ? E G38 202 F C42 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E G38 2 N2 ? ? ? 1_555 F C42 11 O2 ? ? E G38 202 F C42 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E G38 2 O6 ? ? ? 1_555 F C42 11 N4 ? ? E G38 202 F C42 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E C42 3 N3 ? ? ? 1_555 F G38 10 N1 ? ? E C42 203 F G38 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E C42 3 N4 ? ? ? 1_555 F G38 10 O6 ? ? E C42 203 F G38 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E C42 3 O2 ? ? ? 1_555 F G38 10 N2 ? ? E C42 203 F G38 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E G38 4 N1 ? ? ? 1_555 F C42 9 N3 ? ? E G38 204 F C42 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E G38 4 N2 ? ? ? 1_555 F C42 9 O2 ? ? E G38 204 F C42 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E G38 4 O6 ? ? ? 1_555 F C42 9 N4 ? ? E G38 204 F C42 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E C42 9 N3 ? ? ? 1_555 F G38 4 N1 ? ? E C42 209 F G38 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E C42 9 N4 ? ? ? 1_555 F G38 4 O6 ? ? E C42 209 F G38 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E C42 9 O2 ? ? ? 1_555 F G38 4 N2 ? ? E C42 209 F G38 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E G38 10 N1 ? ? ? 1_555 F C42 3 N3 ? ? E G38 210 F C42 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E G38 10 N2 ? ? ? 1_555 F C42 3 O2 ? ? E G38 210 F C42 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E G38 10 O6 ? ? ? 1_555 F C42 3 N4 ? ? E G38 210 F C42 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E C42 11 N3 ? ? ? 1_555 F G38 2 N1 ? ? E C42 211 F G38 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E C42 11 N4 ? ? ? 1_555 F G38 2 O6 ? ? E C42 211 F G38 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E C42 11 O2 ? ? ? 1_555 F G38 2 N2 ? ? E C42 211 F G38 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F C42 1 N3 ? ? E DG 212 F C42 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F C42 1 O2 ? ? E DG 212 F C42 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F C42 1 N4 ? ? E DG 212 F C42 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NH4 226 ? 6 'BINDING SITE FOR RESIDUE NH4 A 226' AC2 Software A NH4 228 ? 6 'BINDING SITE FOR RESIDUE NH4 A 228' AC3 Software A CL 250 ? 9 'BINDING SITE FOR RESIDUE CL A 250' AC4 Software B NH4 225 ? 6 'BINDING SITE FOR RESIDUE NH4 B 225' AC5 Software B NH4 227 ? 6 'BINDING SITE FOR RESIDUE NH4 B 227' AC6 Software B CL 249 ? 9 'BINDING SITE FOR RESIDUE CL B 249' AC7 Software E NH4 229 ? 6 'BINDING SITE FOR RESIDUE NH4 E 229' AC8 Software E NH4 235 ? 6 'BINDING SITE FOR RESIDUE NH4 E 235' AC9 Software E CL 251 ? 9 'BINDING SITE FOR RESIDUE CL E 251' BC1 Software E NH4 230 ? 6 'BINDING SITE FOR RESIDUE NH4 E 230' BC2 Software E NH4 234 ? 6 'BINDING SITE FOR RESIDUE NH4 E 234' BC3 Software E CL 252 ? 9 'BINDING SITE FOR RESIDUE CL E 252' BC4 Software F NH4 232 ? 6 'BINDING SITE FOR RESIDUE NH4 F 232' BC5 Software F NH4 231 ? 6 'BINDING SITE FOR RESIDUE NH4 F 231' BC6 Software F NH4 236 ? 6 'BINDING SITE FOR RESIDUE NH4 F 236' BC7 Software F CL 254 ? 9 'BINDING SITE FOR RESIDUE CL F 254' BC8 Software F NH4 233 ? 6 'BINDING SITE FOR RESIDUE NH4 F 233' BC9 Software F CL 253 ? 9 'BINDING SITE FOR RESIDUE CL F 253' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G38 A 10 ? G38 A 10 . ? 3_555 ? 2 AC1 6 G38 A 10 ? G38 A 10 . ? 1_555 ? 3 AC1 6 G38 A 10 ? G38 A 10 . ? 2_555 ? 4 AC1 6 C42 B 11 ? C42 B 23 . ? 10_445 ? 5 AC1 6 C42 B 11 ? C42 B 23 . ? 12_555 ? 6 AC1 6 C42 B 11 ? C42 B 23 . ? 11_455 ? 7 AC2 6 CL L . ? CL A 250 . ? 1_555 ? 8 AC2 6 CL L . ? CL A 250 . ? 2_555 ? 9 AC2 6 CL L . ? CL A 250 . ? 3_555 ? 10 AC2 6 HOH QA . ? HOH A 318 . ? 1_555 ? 11 AC2 6 HOH QA . ? HOH A 318 . ? 2_555 ? 12 AC2 6 HOH QA . ? HOH A 318 . ? 3_555 ? 13 AC3 9 C42 A 9 ? C42 A 9 . ? 3_555 ? 14 AC3 9 C42 A 9 ? C42 A 9 . ? 2_555 ? 15 AC3 9 C42 A 9 ? C42 A 9 . ? 1_555 ? 16 AC3 9 NH4 K . ? NH4 A 228 . ? 3_555 ? 17 AC3 9 NH4 K . ? NH4 A 228 . ? 1_555 ? 18 AC3 9 NH4 K . ? NH4 A 228 . ? 2_555 ? 19 AC3 9 G38 B 10 ? G38 B 22 . ? 11_455 ? 20 AC3 9 G38 B 10 ? G38 B 22 . ? 12_555 ? 21 AC3 9 G38 B 10 ? G38 B 22 . ? 10_445 ? 22 AC4 6 A43 A 6 ? A43 A 6 . ? 10_445 ? 23 AC4 6 A43 A 6 ? A43 A 6 . ? 11_455 ? 24 AC4 6 A43 A 6 ? A43 A 6 . ? 12_555 ? 25 AC4 6 NYM B 7 ? NYM B 19 . ? 3_555 ? 26 AC4 6 NYM B 7 ? NYM B 19 . ? 1_555 ? 27 AC4 6 NYM B 7 ? NYM B 19 . ? 2_555 ? 28 AC5 6 CL R . ? CL B 249 . ? 1_555 ? 29 AC5 6 CL R . ? CL B 249 . ? 2_555 ? 30 AC5 6 CL R . ? CL B 249 . ? 3_555 ? 31 AC5 6 HOH RA . ? HOH B 317 . ? 1_555 ? 32 AC5 6 HOH RA . ? HOH B 317 . ? 2_555 ? 33 AC5 6 HOH RA . ? HOH B 317 . ? 3_555 ? 34 AC6 9 A43 A 5 ? A43 A 5 . ? 10_445 ? 35 AC6 9 A43 A 5 ? A43 A 5 . ? 11_455 ? 36 AC6 9 A43 A 5 ? A43 A 5 . ? 12_555 ? 37 AC6 9 A43 B 6 ? A43 B 18 . ? 3_555 ? 38 AC6 9 A43 B 6 ? A43 B 18 . ? 2_555 ? 39 AC6 9 A43 B 6 ? A43 B 18 . ? 1_555 ? 40 AC6 9 NH4 Q . ? NH4 B 227 . ? 2_555 ? 41 AC6 9 NH4 Q . ? NH4 B 227 . ? 3_555 ? 42 AC6 9 NH4 Q . ? NH4 B 227 . ? 1_555 ? 43 AC7 6 A43 D 6 ? A43 D 118 . ? 11_555 ? 44 AC7 6 A43 D 6 ? A43 D 118 . ? 12_555 ? 45 AC7 6 A43 D 6 ? A43 D 118 . ? 10_555 ? 46 AC7 6 A43 E 5 ? A43 E 205 . ? 2_655 ? 47 AC7 6 A43 E 5 ? A43 E 205 . ? 3_665 ? 48 AC7 6 A43 E 5 ? A43 E 205 . ? 1_555 ? 49 AC8 6 CL GA . ? CL E 251 . ? 1_555 ? 50 AC8 6 CL GA . ? CL E 251 . ? 2_655 ? 51 AC8 6 CL GA . ? CL E 251 . ? 3_665 ? 52 AC8 6 HOH UA . ? HOH E 361 . ? 1_555 ? 53 AC8 6 HOH UA . ? HOH E 361 . ? 3_665 ? 54 AC8 6 HOH UA . ? HOH E 361 . ? 2_655 ? 55 AC9 9 A43 D 5 ? A43 D 117 . ? 12_555 ? 56 AC9 9 A43 D 5 ? A43 D 117 . ? 11_555 ? 57 AC9 9 A43 D 5 ? A43 D 117 . ? 10_555 ? 58 AC9 9 G38 E 4 ? G38 E 204 . ? 3_665 ? 59 AC9 9 G38 E 4 ? G38 E 204 . ? 1_555 ? 60 AC9 9 G38 E 4 ? G38 E 204 . ? 2_655 ? 61 AC9 9 NH4 FA . ? NH4 E 235 . ? 3_665 ? 62 AC9 9 NH4 FA . ? NH4 E 235 . ? 2_655 ? 63 AC9 9 NH4 FA . ? NH4 E 235 . ? 1_555 ? 64 BC1 6 G38 D 10 ? G38 D 122 . ? 10_445 ? 65 BC1 6 G38 D 10 ? G38 D 122 . ? 11_455 ? 66 BC1 6 G38 D 10 ? G38 D 122 . ? 12_555 ? 67 BC1 6 C42 E 9 ? C42 E 209 . ? 1_555 ? 68 BC1 6 C42 E 9 ? C42 E 209 . ? 2_555 ? 69 BC1 6 C42 E 9 ? C42 E 209 . ? 3_555 ? 70 BC2 6 CL JA . ? CL E 252 . ? 1_555 ? 71 BC2 6 CL JA . ? CL E 252 . ? 2_555 ? 72 BC2 6 CL JA . ? CL E 252 . ? 3_555 ? 73 BC2 6 HOH UA . ? HOH E 360 . ? 1_555 ? 74 BC2 6 HOH UA . ? HOH E 360 . ? 2_555 ? 75 BC2 6 HOH UA . ? HOH E 360 . ? 3_555 ? 76 BC3 9 C42 D 9 ? C42 D 121 . ? 10_445 ? 77 BC3 9 C42 D 9 ? C42 D 121 . ? 11_455 ? 78 BC3 9 C42 D 9 ? C42 D 121 . ? 12_555 ? 79 BC3 9 NYM E 8 ? NYM E 208 . ? 2_555 ? 80 BC3 9 NYM E 8 ? NYM E 208 . ? 1_555 ? 81 BC3 9 NYM E 8 ? NYM E 208 . ? 3_555 ? 82 BC3 9 NH4 IA . ? NH4 E 234 . ? 3_555 ? 83 BC3 9 NH4 IA . ? NH4 E 234 . ? 2_555 ? 84 BC3 9 NH4 IA . ? NH4 E 234 . ? 1_555 ? 85 BC4 6 C42 C 11 ? C42 C 111 . ? 12_555 ? 86 BC4 6 C42 C 11 ? C42 C 111 . ? 10_555 ? 87 BC4 6 C42 C 11 ? C42 C 111 . ? 11_555 ? 88 BC4 6 DG F 12 ? DG F 224 . ? 3_665 ? 89 BC4 6 DG F 12 ? DG F 224 . ? 2_655 ? 90 BC4 6 DG F 12 ? DG F 224 . ? 1_555 ? 91 BC5 6 NYM C 7 ? NYM C 107 . ? 10_445 ? 92 BC5 6 NYM C 7 ? NYM C 107 . ? 11_455 ? 93 BC5 6 NYM C 7 ? NYM C 107 . ? 12_555 ? 94 BC5 6 NYM F 8 ? NYM F 220 . ? 3_555 ? 95 BC5 6 NYM F 8 ? NYM F 220 . ? 1_555 ? 96 BC5 6 NYM F 8 ? NYM F 220 . ? 2_555 ? 97 BC6 6 CL NA . ? CL F 254 . ? 1_555 ? 98 BC6 6 CL NA . ? CL F 254 . ? 2_655 ? 99 BC6 6 CL NA . ? CL F 254 . ? 3_665 ? 100 BC6 6 HOH VA . ? HOH F 362 . ? 3_665 ? 101 BC6 6 HOH VA . ? HOH F 362 . ? 1_555 ? 102 BC6 6 HOH VA . ? HOH F 362 . ? 2_655 ? 103 BC7 9 G38 C 10 ? G38 C 110 . ? 12_555 ? 104 BC7 9 G38 C 10 ? G38 C 110 . ? 10_555 ? 105 BC7 9 G38 C 10 ? G38 C 110 . ? 11_555 ? 106 BC7 9 C42 F 11 ? C42 F 223 . ? 3_665 ? 107 BC7 9 C42 F 11 ? C42 F 223 . ? 2_655 ? 108 BC7 9 C42 F 11 ? C42 F 223 . ? 1_555 ? 109 BC7 9 NH4 MA . ? NH4 F 236 . ? 3_665 ? 110 BC7 9 NH4 MA . ? NH4 F 236 . ? 2_655 ? 111 BC7 9 NH4 MA . ? NH4 F 236 . ? 1_555 ? 112 BC8 6 CL PA . ? CL F 253 . ? 1_555 ? 113 BC8 6 CL PA . ? CL F 253 . ? 2_555 ? 114 BC8 6 CL PA . ? CL F 253 . ? 3_555 ? 115 BC8 6 HOH VA . ? HOH F 359 . ? 1_555 ? 116 BC8 6 HOH VA . ? HOH F 359 . ? 3_555 ? 117 BC8 6 HOH VA . ? HOH F 359 . ? 2_555 ? 118 BC9 9 A43 C 6 ? A43 C 106 . ? 10_445 ? 119 BC9 9 A43 C 6 ? A43 C 106 . ? 11_455 ? 120 BC9 9 A43 C 6 ? A43 C 106 . ? 12_555 ? 121 BC9 9 NYM F 7 ? NYM F 219 . ? 3_555 ? 122 BC9 9 NYM F 7 ? NYM F 219 . ? 2_555 ? 123 BC9 9 NYM F 7 ? NYM F 219 . ? 1_555 ? 124 BC9 9 NH4 OA . ? NH4 F 233 . ? 2_555 ? 125 BC9 9 NH4 OA . ? NH4 F 233 . ? 3_555 ? 126 BC9 9 NH4 OA . ? NH4 F 233 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N3 C NYM 107 ? ? 1_555 N3 F NYM 220 ? ? 12_555 0.34 2 1 "O5'" A A43 6 ? ? 1_555 "O5'" B NYM 19 ? ? 12_555 0.54 3 1 P A A43 6 ? ? 1_555 "O5'" B NYM 19 ? ? 12_555 1.32 4 1 C4 C NYM 107 ? ? 1_555 N3 F NYM 220 ? ? 12_555 1.32 5 1 C2 C NYM 107 ? ? 1_555 N3 F NYM 220 ? ? 12_555 1.68 6 1 "C5'" A A43 6 ? ? 1_555 "O5'" B NYM 19 ? ? 12_555 1.73 7 1 O4 C NYM 107 ? ? 1_555 N3 F NYM 220 ? ? 12_555 2.04 8 1 O2P A A43 6 ? ? 1_555 "O5'" B NYM 19 ? ? 12_555 2.14 9 1 O1P A A43 6 ? ? 1_555 "O5'" B NYM 19 ? ? 12_555 2.16 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 112 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.062 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C42 1 A C42 1 ? DC ? 2 A G38 2 A G38 2 ? DG ? 3 A C42 3 A C42 3 ? DC ? 4 A G38 4 A G38 4 ? DG ? 5 A A43 5 A A43 5 ? DA ? 6 A A43 6 A A43 6 ? DA ? 7 A C42 9 A C42 9 ? DC ? 8 A G38 10 A G38 10 ? DG ? 9 A C42 11 A C42 11 ? DC ? 10 B C42 1 B C42 13 ? DC ? 11 B G38 2 B G38 14 ? DG ? 12 B C42 3 B C42 15 ? DC ? 13 B G38 4 B G38 16 ? DG ? 14 B A43 5 B A43 17 ? DA ? 15 B A43 6 B A43 18 ? DA ? 16 B C42 9 B C42 21 ? DC ? 17 B G38 10 B G38 22 ? DG ? 18 B C42 11 B C42 23 ? DC ? 19 C C42 1 C C42 101 ? DC ? 20 C G38 2 C G38 102 ? DG ? 21 C C42 3 C C42 103 ? DC ? 22 C G38 4 C G38 104 ? DG ? 23 C A43 5 C A43 105 ? DA ? 24 C A43 6 C A43 106 ? DA ? 25 C C42 9 C C42 109 ? DC ? 26 C G38 10 C G38 110 ? DG ? 27 C C42 11 C C42 111 ? DC ? 28 D C42 1 D C42 113 ? DC ? 29 D G38 2 D G38 114 ? DG ? 30 D C42 3 D C42 115 ? DC ? 31 D G38 4 D G38 116 ? DG ? 32 D A43 5 D A43 117 ? DA ? 33 D A43 6 D A43 118 ? DA ? 34 D C42 9 D C42 121 ? DC ? 35 D G38 10 D G38 122 ? DG ? 36 D C42 11 D C42 123 ? DC ? 37 E C42 1 E C42 201 ? DC ? 38 E G38 2 E G38 202 ? DG ? 39 E C42 3 E C42 203 ? DC ? 40 E G38 4 E G38 204 ? DG ? 41 E A43 5 E A43 205 ? DA ? 42 E A43 6 E A43 206 ? DA ? 43 E C42 9 E C42 209 ? DC ? 44 E G38 10 E G38 210 ? DG ? 45 E C42 11 E C42 211 ? DC ? 46 F C42 1 F C42 213 ? DC ? 47 F G38 2 F G38 214 ? DG ? 48 F C42 3 F C42 215 ? DC ? 49 F G38 4 F G38 216 ? DG ? 50 F A43 5 F A43 217 ? DA ? 51 F A43 6 F A43 218 ? DA ? 52 F C42 9 F C42 221 ? DC ? 53 F G38 10 F G38 222 ? DG ? 54 F C42 11 F C42 223 ? DC ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NH4 237 ? G NH4 . 2 1 A NH4 239 ? H NH4 . 3 1 A CL 255 ? I CL . 4 1 A NH4 226 ? J NH4 . 5 1 A NH4 228 ? K NH4 . 6 1 A CL 250 ? L CL . 7 1 B NH4 238 ? M NH4 . 8 1 B NH4 240 ? N NH4 . 9 1 B CL 256 ? O CL . 10 1 B NH4 225 ? P NH4 . 11 1 B NH4 227 ? Q NH4 . 12 1 B CL 249 ? R CL . 13 1 C NH4 243 ? S NH4 . 14 1 C NH4 245 ? T NH4 . 15 1 C CL 259 ? U CL . 16 1 C NH4 244 ? V NH4 . 17 1 C NH4 248 ? W NH4 . 18 1 C CL 260 ? X CL . 19 1 D NH4 242 ? Y NH4 . 20 1 D NH4 246 ? Z NH4 . 21 1 D CL 258 ? AA CL . 22 1 D NH4 241 ? BA NH4 . 23 1 D NH4 247 ? CA NH4 . 24 1 D CL 257 ? DA CL . 25 1 E NH4 229 ? EA NH4 . 26 1 E NH4 235 ? FA NH4 . 27 1 E CL 251 ? GA CL . 28 1 E NH4 230 ? HA NH4 . 29 1 E NH4 234 ? IA NH4 . 30 1 E CL 252 ? JA CL . 31 1 F NH4 232 ? KA NH4 . 32 1 F NH4 231 ? LA NH4 . 33 1 F NH4 236 ? MA NH4 . 34 1 F CL 254 ? NA CL . 35 1 F NH4 233 ? OA NH4 . 36 1 F CL 253 ? PA CL . 37 1 E HOH 381 ? UA HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 N 0 A NH4 237 ? G NH4 ? 2 1 N 0 A NH4 239 ? H NH4 ? 3 1 N 0 A CL 255 ? I CL ? 4 1 N 0 B NH4 238 ? M NH4 ? 5 1 N 0 B NH4 240 ? N NH4 ? 6 1 N 0 B CL 256 ? O CL ? 7 1 N 0 C NH4 243 ? S NH4 ? 8 1 N 0 C NH4 245 ? T NH4 ? 9 1 N 0 C CL 259 ? U CL ? 10 1 N 0 C NH4 244 ? V NH4 ? 11 1 N 0 C NH4 248 ? W NH4 ? 12 1 N 0 C CL 260 ? X CL ? 13 1 N 0 D NH4 242 ? Y NH4 ? 14 1 N 0 D NH4 246 ? Z NH4 ? 15 1 N 0 D CL 258 ? AA CL ? 16 1 N 0 D NH4 241 ? BA NH4 ? 17 1 N 0 D NH4 247 ? CA NH4 ? 18 1 N 0 D CL 257 ? DA CL ? 19 1 N 0 A HOH 403 ? QA HOH ? 20 1 N 0 A HOH 404 ? QA HOH ? 21 1 N 0 A HOH 405 ? QA HOH ? 22 1 N 0 A HOH 406 ? QA HOH ? 23 1 N 0 A HOH 410 ? QA HOH ? 24 1 N 0 A HOH 411 ? QA HOH ? 25 1 N 0 A HOH 414 ? QA HOH ? 26 1 N 0 A HOH 415 ? QA HOH ? 27 1 N 0 A HOH 417 ? QA HOH ? 28 1 N 0 A HOH 419 ? QA HOH ? 29 1 N 0 A HOH 423 ? QA HOH ? 30 1 N 0 A HOH 425 ? QA HOH ? 31 1 N 0 A HOH 426 ? QA HOH ? 32 1 N 0 A HOH 428 ? QA HOH ? 33 1 N 0 A HOH 431 ? QA HOH ? 34 1 N 0 A HOH 492 ? QA HOH ? 35 1 N 0 A HOH 499 ? QA HOH ? 36 1 N 0 B HOH 407 ? RA HOH ? 37 1 N 0 B HOH 408 ? RA HOH ? 38 1 N 0 B HOH 409 ? RA HOH ? 39 1 N 0 B HOH 412 ? RA HOH ? 40 1 N 0 B HOH 413 ? RA HOH ? 41 1 N 0 B HOH 416 ? RA HOH ? 42 1 N 0 B HOH 420 ? RA HOH ? 43 1 N 0 B HOH 421 ? RA HOH ? 44 1 N 0 B HOH 422 ? RA HOH ? 45 1 N 0 B HOH 424 ? RA HOH ? 46 1 N 0 B HOH 427 ? RA HOH ? 47 1 N 0 B HOH 429 ? RA HOH ? 48 1 N 0 B HOH 430 ? RA HOH ? 49 1 N 0 B HOH 493 ? RA HOH ? 50 1 N 0 B HOH 495 ? RA HOH ? 51 1 N 0 B HOH 498 ? RA HOH ? 52 1 N 0 C HOH 418 ? SA HOH ? 53 1 N 0 C HOH 440 ? SA HOH ? 54 1 N 0 C HOH 441 ? SA HOH ? 55 1 N 0 C HOH 442 ? SA HOH ? 56 1 N 0 C HOH 443 ? SA HOH ? 57 1 N 0 C HOH 444 ? SA HOH ? 58 1 N 0 C HOH 445 ? SA HOH ? 59 1 N 0 C HOH 446 ? SA HOH ? 60 1 N 0 C HOH 448 ? SA HOH ? 61 1 N 0 C HOH 449 ? SA HOH ? 62 1 N 0 C HOH 450 ? SA HOH ? 63 1 N 0 C HOH 452 ? SA HOH ? 64 1 N 0 C HOH 454 ? SA HOH ? 65 1 N 0 C HOH 456 ? SA HOH ? 66 1 N 0 C HOH 457 ? SA HOH ? 67 1 N 0 C HOH 459 ? SA HOH ? 68 1 N 0 C HOH 462 ? SA HOH ? 69 1 N 0 C HOH 463 ? SA HOH ? 70 1 N 0 C HOH 465 ? SA HOH ? 71 1 N 0 C HOH 466 ? SA HOH ? 72 1 N 0 C HOH 467 ? SA HOH ? 73 1 N 0 C HOH 470 ? SA HOH ? 74 1 N 0 C HOH 483 ? SA HOH ? 75 1 N 0 C HOH 484 ? SA HOH ? 76 1 N 0 C HOH 486 ? SA HOH ? 77 1 N 0 D HOH 432 ? TA HOH ? 78 1 N 0 D HOH 433 ? TA HOH ? 79 1 N 0 D HOH 434 ? TA HOH ? 80 1 N 0 D HOH 435 ? TA HOH ? 81 1 N 0 D HOH 436 ? TA HOH ? 82 1 N 0 D HOH 437 ? TA HOH ? 83 1 N 0 D HOH 438 ? TA HOH ? 84 1 N 0 D HOH 439 ? TA HOH ? 85 1 N 0 D HOH 447 ? TA HOH ? 86 1 N 0 D HOH 451 ? TA HOH ? 87 1 N 0 D HOH 453 ? TA HOH ? 88 1 N 0 D HOH 455 ? TA HOH ? 89 1 N 0 D HOH 458 ? TA HOH ? 90 1 N 0 D HOH 460 ? TA HOH ? 91 1 N 0 D HOH 461 ? TA HOH ? 92 1 N 0 D HOH 464 ? TA HOH ? 93 1 N 0 D HOH 468 ? TA HOH ? 94 1 N 0 D HOH 469 ? TA HOH ? 95 1 N 0 D HOH 471 ? TA HOH ? 96 1 N 0 D HOH 472 ? TA HOH ? 97 1 N 0 D HOH 473 ? TA HOH ? 98 1 N 0 D HOH 474 ? TA HOH ? 99 1 N 0 D HOH 475 ? TA HOH ? 100 1 N 0 D HOH 476 ? TA HOH ? 101 1 N 0 D HOH 477 ? TA HOH ? 102 1 N 0 D HOH 478 ? TA HOH ? 103 1 N 0 D HOH 479 ? TA HOH ? 104 1 N 0 D HOH 480 ? TA HOH ? 105 1 N 0 D HOH 481 ? TA HOH ? 106 1 N 0 D HOH 482 ? TA HOH ? 107 1 N 0 D HOH 485 ? TA HOH ? 108 1 N 0 D HOH 487 ? TA HOH ? 109 1 N 0 D HOH 488 ? TA HOH ? 110 1 N 0 D HOH 497 ? TA HOH ? 111 1 N 0 D HOH 500 ? TA HOH ? 112 1 N 0 E HOH 491 ? UA HOH ? 113 1 N 0 F HOH 489 ? VA HOH ? 114 1 N 0 F HOH 490 ? VA HOH ? 115 1 N 0 F HOH 494 ? VA HOH ? 116 1 N 0 F HOH 496 ? VA HOH ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A43 P P N N 1 A43 O1P O N N 2 A43 O2P O N N 3 A43 O3P O N N 4 A43 "O5'" O N N 5 A43 "C5'" C N N 6 A43 "C4'" C N S 7 A43 "O4'" O N N 8 A43 "C3'" C N S 9 A43 "C2'" C N N 10 A43 "C1'" C N R 11 A43 N9 N Y N 12 A43 C8 C Y N 13 A43 N7 N Y N 14 A43 C5 C Y N 15 A43 C6 C Y N 16 A43 N6 N N N 17 A43 N1 N Y N 18 A43 C2 C Y N 19 A43 N3 N Y N 20 A43 C4 C Y N 21 A43 N N N N 22 A43 H1P H N N 23 A43 H3P H N N 24 A43 "H5'1" H N N 25 A43 "H5'2" H N N 26 A43 "H4'" H N N 27 A43 "H3'" H N N 28 A43 "H2'1" H N N 29 A43 "H2'2" H N N 30 A43 "H1'" H N N 31 A43 H8 H N N 32 A43 H6N1 H N N 33 A43 H6N2 H N N 34 A43 H2 H N N 35 A43 HN1 H N N 36 A43 HN2 H N N 37 C42 N1 N N N 38 C42 C2 C N N 39 C42 N3 N N N 40 C42 C4 C N N 41 C42 C5 C N N 42 C42 C6 C N N 43 C42 O2 O N N 44 C42 N4 N N N 45 C42 "C1'" C N R 46 C42 "C2'" C N N 47 C42 "C3'" C N S 48 C42 "C4'" C N S 49 C42 "O4'" O N N 50 C42 "C5'" C N N 51 C42 "O5'" O N N 52 C42 P P N N 53 C42 O1P O N N 54 C42 O2P O N N 55 C42 O3P O N N 56 C42 N N N N 57 C42 H5 H N N 58 C42 H6 H N N 59 C42 H4N1 H N N 60 C42 H4N2 H N N 61 C42 "H1'" H N N 62 C42 "H2'1" H N N 63 C42 "H2'2" H N N 64 C42 "H3'" H N N 65 C42 "H4'" H N N 66 C42 "H5'1" H N N 67 C42 "H5'2" H N N 68 C42 H1P H N N 69 C42 H3P H N N 70 C42 HN1 H N N 71 C42 HN2 H N N 72 CL CL CL N N 73 DG OP3 O N N 74 DG P P N N 75 DG OP1 O N N 76 DG OP2 O N N 77 DG "O5'" O N N 78 DG "C5'" C N N 79 DG "C4'" C N R 80 DG "O4'" O N N 81 DG "C3'" C N S 82 DG "O3'" O N N 83 DG "C2'" C N N 84 DG "C1'" C N R 85 DG N9 N Y N 86 DG C8 C Y N 87 DG N7 N Y N 88 DG C5 C Y N 89 DG C6 C N N 90 DG O6 O N N 91 DG N1 N N N 92 DG C2 C N N 93 DG N2 N N N 94 DG N3 N N N 95 DG C4 C Y N 96 DG HOP3 H N N 97 DG HOP2 H N N 98 DG "H5'" H N N 99 DG "H5''" H N N 100 DG "H4'" H N N 101 DG "H3'" H N N 102 DG "HO3'" H N N 103 DG "H2'" H N N 104 DG "H2''" H N N 105 DG "H1'" H N N 106 DG H8 H N N 107 DG H1 H N N 108 DG H21 H N N 109 DG H22 H N N 110 G38 PA P N N 111 G38 O1A O N N 112 G38 O2A O N N 113 G38 O3P O N N 114 G38 "O5'" O N N 115 G38 "C5'" C N N 116 G38 "C4'" C N S 117 G38 "O4'" O N N 118 G38 "C3'" C N S 119 G38 "C2'" C N N 120 G38 "C1'" C N R 121 G38 N9 N Y N 122 G38 C8 C Y N 123 G38 N7 N Y N 124 G38 C5 C Y N 125 G38 C6 C N N 126 G38 O6 O N N 127 G38 N1 N N N 128 G38 C2 C N N 129 G38 N2 N N N 130 G38 N3 N N N 131 G38 C4 C Y N 132 G38 N N N N 133 G38 H2A H N N 134 G38 H3P H N N 135 G38 "H5'1" H N N 136 G38 "H5'2" H N N 137 G38 "H4'" H N N 138 G38 "H3'" H N N 139 G38 "H2'1" H N N 140 G38 "H2'2" H N N 141 G38 "H1'" H N N 142 G38 H8 H N N 143 G38 HN3 H N N 144 G38 H2N1 H N N 145 G38 H2N2 H N N 146 G38 HN1 H N N 147 G38 HN2 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 NH4 N N N N 152 NH4 HN1 H N N 153 NH4 HN2 H N N 154 NH4 HN3 H N N 155 NH4 HN4 H N N 156 NYM N1 N N N 157 NYM C6 C N N 158 NYM C2 C N N 159 NYM O2 O N N 160 NYM N3 N N N 161 NYM C4 C N N 162 NYM O4 O N N 163 NYM C5 C N N 164 NYM C7 C N N 165 NYM "O4'" O N N 166 NYM "N3'" N N N 167 NYM "C1'" C N R 168 NYM "C2'" C N N 169 NYM "C3'" C N S 170 NYM "C4'" C N S 171 NYM "O5'" O N N 172 NYM "C5'" C N N 173 NYM P1 P N N 174 NYM OP2 O N N 175 NYM OP1 O N N 176 NYM OP3 O N N 177 NYM HC61 H N N 178 NYM HN31 H N N 179 NYM HC71 H N N 180 NYM HC72 H N N 181 NYM HC73 H N N 182 NYM "H3'1" H N N 183 NYM "H3'2" H N N 184 NYM "H1'1" H N N 185 NYM "H2'1" H N N 186 NYM "H2'2" H N N 187 NYM HC31 H N N 188 NYM "H4'1" H N N 189 NYM "H5'1" H N N 190 NYM "H5'2" H N N 191 NYM HP31 H N N 192 NYM HP21 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A43 P O1P sing N N 1 A43 P O2P doub N N 2 A43 P O3P sing N N 3 A43 P "O5'" sing N N 4 A43 O1P H1P sing N N 5 A43 O3P H3P sing N N 6 A43 "O5'" "C5'" sing N N 7 A43 "C5'" "C4'" sing N N 8 A43 "C5'" "H5'1" sing N N 9 A43 "C5'" "H5'2" sing N N 10 A43 "C4'" "O4'" sing N N 11 A43 "C4'" "C3'" sing N N 12 A43 "C4'" "H4'" sing N N 13 A43 "O4'" "C1'" sing N N 14 A43 "C3'" "C2'" sing N N 15 A43 "C3'" N sing N N 16 A43 "C3'" "H3'" sing N N 17 A43 "C2'" "C1'" sing N N 18 A43 "C2'" "H2'1" sing N N 19 A43 "C2'" "H2'2" sing N N 20 A43 "C1'" N9 sing N N 21 A43 "C1'" "H1'" sing N N 22 A43 N9 C8 sing Y N 23 A43 N9 C4 sing Y N 24 A43 C8 N7 doub Y N 25 A43 C8 H8 sing N N 26 A43 N7 C5 sing Y N 27 A43 C5 C6 doub Y N 28 A43 C5 C4 sing Y N 29 A43 C6 N6 sing N N 30 A43 C6 N1 sing Y N 31 A43 N6 H6N1 sing N N 32 A43 N6 H6N2 sing N N 33 A43 N1 C2 doub Y N 34 A43 C2 N3 sing Y N 35 A43 C2 H2 sing N N 36 A43 N3 C4 doub Y N 37 A43 N HN1 sing N N 38 A43 N HN2 sing N N 39 C42 N1 C2 sing N N 40 C42 N1 C6 sing N N 41 C42 N1 "C1'" sing N N 42 C42 C2 N3 sing N N 43 C42 C2 O2 doub N N 44 C42 N3 C4 doub N N 45 C42 C4 C5 sing N N 46 C42 C4 N4 sing N N 47 C42 C5 C6 doub N N 48 C42 C5 H5 sing N N 49 C42 C6 H6 sing N N 50 C42 N4 H4N1 sing N N 51 C42 N4 H4N2 sing N N 52 C42 "C1'" "C2'" sing N N 53 C42 "C1'" "O4'" sing N N 54 C42 "C1'" "H1'" sing N N 55 C42 "C2'" "C3'" sing N N 56 C42 "C2'" "H2'1" sing N N 57 C42 "C2'" "H2'2" sing N N 58 C42 "C3'" "C4'" sing N N 59 C42 "C3'" N sing N N 60 C42 "C3'" "H3'" sing N N 61 C42 "C4'" "O4'" sing N N 62 C42 "C4'" "C5'" sing N N 63 C42 "C4'" "H4'" sing N N 64 C42 "C5'" "O5'" sing N N 65 C42 "C5'" "H5'1" sing N N 66 C42 "C5'" "H5'2" sing N N 67 C42 "O5'" P sing N N 68 C42 P O1P sing N N 69 C42 P O2P doub N N 70 C42 P O3P sing N N 71 C42 O1P H1P sing N N 72 C42 O3P H3P sing N N 73 C42 N HN1 sing N N 74 C42 N HN2 sing N N 75 DG OP3 P sing N N 76 DG OP3 HOP3 sing N N 77 DG P OP1 doub N N 78 DG P OP2 sing N N 79 DG P "O5'" sing N N 80 DG OP2 HOP2 sing N N 81 DG "O5'" "C5'" sing N N 82 DG "C5'" "C4'" sing N N 83 DG "C5'" "H5'" sing N N 84 DG "C5'" "H5''" sing N N 85 DG "C4'" "O4'" sing N N 86 DG "C4'" "C3'" sing N N 87 DG "C4'" "H4'" sing N N 88 DG "O4'" "C1'" sing N N 89 DG "C3'" "O3'" sing N N 90 DG "C3'" "C2'" sing N N 91 DG "C3'" "H3'" sing N N 92 DG "O3'" "HO3'" sing N N 93 DG "C2'" "C1'" sing N N 94 DG "C2'" "H2'" sing N N 95 DG "C2'" "H2''" sing N N 96 DG "C1'" N9 sing N N 97 DG "C1'" "H1'" sing N N 98 DG N9 C8 sing Y N 99 DG N9 C4 sing Y N 100 DG C8 N7 doub Y N 101 DG C8 H8 sing N N 102 DG N7 C5 sing Y N 103 DG C5 C6 sing N N 104 DG C5 C4 doub Y N 105 DG C6 O6 doub N N 106 DG C6 N1 sing N N 107 DG N1 C2 sing N N 108 DG N1 H1 sing N N 109 DG C2 N2 sing N N 110 DG C2 N3 doub N N 111 DG N2 H21 sing N N 112 DG N2 H22 sing N N 113 DG N3 C4 sing N N 114 G38 PA O1A doub N N 115 G38 PA O2A sing N N 116 G38 PA O3P sing N N 117 G38 PA "O5'" sing N N 118 G38 O2A H2A sing N N 119 G38 O3P H3P sing N N 120 G38 "O5'" "C5'" sing N N 121 G38 "C5'" "C4'" sing N N 122 G38 "C5'" "H5'1" sing N N 123 G38 "C5'" "H5'2" sing N N 124 G38 "C4'" "O4'" sing N N 125 G38 "C4'" "C3'" sing N N 126 G38 "C4'" "H4'" sing N N 127 G38 "O4'" "C1'" sing N N 128 G38 "C3'" "C2'" sing N N 129 G38 "C3'" N sing N N 130 G38 "C3'" "H3'" sing N N 131 G38 "C2'" "C1'" sing N N 132 G38 "C2'" "H2'1" sing N N 133 G38 "C2'" "H2'2" sing N N 134 G38 "C1'" N9 sing N N 135 G38 "C1'" "H1'" sing N N 136 G38 N9 C8 sing Y N 137 G38 N9 C4 sing Y N 138 G38 C8 N7 doub Y N 139 G38 C8 H8 sing N N 140 G38 N7 C5 sing Y N 141 G38 C5 C6 sing N N 142 G38 C5 C4 doub Y N 143 G38 C6 O6 doub N N 144 G38 C6 N1 sing N N 145 G38 N1 C2 sing N N 146 G38 N1 HN3 sing N N 147 G38 C2 N2 sing N N 148 G38 C2 N3 doub N N 149 G38 N2 H2N1 sing N N 150 G38 N2 H2N2 sing N N 151 G38 N3 C4 sing N N 152 G38 N HN1 sing N N 153 G38 N HN2 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 NH4 N HN1 sing N N 157 NH4 N HN2 sing N N 158 NH4 N HN3 sing N N 159 NH4 N HN4 sing N N 160 NYM N1 C6 sing N N 161 NYM N1 C2 sing N N 162 NYM N1 "C1'" sing N N 163 NYM C6 C5 doub N N 164 NYM C6 HC61 sing N N 165 NYM C2 O2 doub N N 166 NYM C2 N3 sing N N 167 NYM N3 C4 sing N N 168 NYM N3 HN31 sing N N 169 NYM C4 O4 doub N N 170 NYM C4 C5 sing N N 171 NYM C5 C7 sing N N 172 NYM C7 HC71 sing N N 173 NYM C7 HC72 sing N N 174 NYM C7 HC73 sing N N 175 NYM "O4'" "C1'" sing N N 176 NYM "O4'" "C4'" sing N N 177 NYM "N3'" "C3'" sing N N 178 NYM "N3'" "H3'1" sing N N 179 NYM "N3'" "H3'2" sing N N 180 NYM "C1'" "C2'" sing N N 181 NYM "C1'" "H1'1" sing N N 182 NYM "C2'" "C3'" sing N N 183 NYM "C2'" "H2'1" sing N N 184 NYM "C2'" "H2'2" sing N N 185 NYM "C3'" "C4'" sing N N 186 NYM "C3'" HC31 sing N N 187 NYM "C4'" "C5'" sing N N 188 NYM "C4'" "H4'1" sing N N 189 NYM "O5'" "C5'" sing N N 190 NYM "O5'" P1 sing N N 191 NYM "C5'" "H5'1" sing N N 192 NYM "C5'" "H5'2" sing N N 193 NYM P1 OP2 sing N N 194 NYM P1 OP1 doub N N 195 NYM P1 OP3 sing N N 196 NYM OP2 HP31 sing N N 197 NYM OP3 HP21 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 363D 'double helix' 363D 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G38 4 1_555 B C42 9 1_555 0.485 -0.028 -0.201 6.471 -7.489 -12.502 1 A_G384:C4221_B A 4 ? B 21 ? 19 1 1 A C42 3 1_555 B G38 10 1_555 -0.598 -0.025 -0.110 3.125 -14.231 -3.879 2 A_C423:G3822_B A 3 ? B 22 ? 19 1 1 A G38 2 1_555 B C42 11 1_555 -0.547 0.087 -0.161 5.420 -13.080 -3.311 3 A_G382:C4223_B A 2 ? B 23 ? 19 1 1 A C42 1 1_555 B DG 12 1_555 -0.360 -0.134 0.096 -3.818 -17.456 -7.728 4 A_C421:DG24_B A 1 ? B 24 ? 19 1 1 C DG 12 1_555 D C42 1 1_555 0.316 -0.299 0.039 4.860 -18.064 0.187 5 C_DG112:C42113_D C 112 ? D 113 ? 19 1 1 C C42 11 1_555 D G38 2 1_555 0.228 -0.188 0.055 -1.333 -18.065 -4.254 6 C_C42111:G38114_D C 111 ? D 114 ? 19 1 1 C G38 10 1_555 D C42 3 1_555 1.040 -0.246 0.145 1.290 -15.392 -4.539 7 C_G38110:C42115_D C 110 ? D 115 ? 19 1 1 C C42 9 1_555 D G38 4 1_555 -0.392 -0.006 -0.007 -8.642 -18.392 -5.502 8 C_C42109:G38116_D C 109 ? D 116 ? 19 1 1 A C42 9 1_555 B G38 4 1_555 0.259 -0.170 -0.545 8.081 -3.373 1.534 9 A_C429:G3816_B A 9 ? B 16 ? 19 1 1 A G38 10 1_555 B C42 3 1_555 -0.572 -0.032 0.090 0.574 -13.100 3.224 10 A_G3810:C4215_B A 10 ? B 15 ? 19 1 1 A C42 11 1_555 B G38 2 1_555 0.295 -0.206 -0.110 5.071 -15.299 3.462 11 A_C4211:G3814_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B C42 1 1_555 -0.788 -0.370 -0.711 -14.954 -14.640 9.090 12 A_DG12:C4213_B A 12 ? B 13 ? 19 1 1 E C42 1 1_555 F DG 12 1_555 0.440 -0.342 0.464 0.350 -12.150 -1.048 13 E_C42201:DG224_F E 201 ? F 224 ? 19 1 1 E G38 2 1_555 F C42 11 1_555 0.147 0.018 -0.384 -2.340 -9.171 4.029 14 E_G38202:C42223_F E 202 ? F 223 ? 19 1 1 E C42 3 1_555 F G38 10 1_555 -0.200 -0.415 0.171 4.503 -7.332 -4.530 15 E_C42203:G38222_F E 203 ? F 222 ? 19 1 1 E G38 4 1_555 F C42 9 1_555 -0.362 -0.022 -0.092 -10.777 -10.750 1.265 16 E_G38204:C42221_F E 204 ? F 221 ? 19 1 1 C C42 1 1_555 D DG 12 1_555 0.666 -0.409 -0.371 5.599 -15.141 7.545 17 C_C42101:DG124_D C 101 ? D 124 ? 19 1 1 C G38 2 1_555 D C42 11 1_555 -0.609 -0.105 0.101 -12.100 -16.148 6.879 18 C_G38102:C42123_D C 102 ? D 123 ? 19 1 1 C C42 3 1_555 D G38 10 1_555 0.173 -0.186 0.121 -5.773 -3.723 0.164 19 C_C42103:G38122_D C 103 ? D 122 ? 19 1 1 C G38 4 1_555 D C42 9 1_555 -0.091 0.017 -0.209 -14.363 -9.417 2.203 20 C_G38104:C42121_D C 104 ? D 121 ? 19 1 1 E C42 9 1_555 F G38 4 1_555 -0.250 0.051 -0.033 9.966 -11.660 4.936 21 E_C42209:G38216_F E 209 ? F 216 ? 19 1 1 E G38 10 1_555 F C42 3 1_555 0.289 -0.082 0.021 0.482 -8.271 -2.368 22 E_G38210:C42215_F E 210 ? F 215 ? 19 1 1 E C42 11 1_555 F G38 2 1_555 -0.200 -0.039 0.182 -6.309 -7.506 0.195 23 E_C42211:G38214_F E 211 ? F 214 ? 19 1 1 E DG 12 1_555 F C42 1 1_555 -1.222 -0.227 0.322 -1.658 -6.852 7.692 24 E_DG212:C42213_F E 212 ? F 213 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G38 4 1_555 B C42 9 1_555 A C42 3 1_555 B G38 10 1_555 0.822 1.656 3.136 1.366 -13.289 27.044 5.504 -1.345 2.142 -26.464 -2.720 30.108 1 AA_G384C423:G3822C4221_BB A 4 ? B 21 ? A 3 ? B 22 ? 1 A C42 3 1_555 B G38 10 1_555 A G38 2 1_555 B C42 11 1_555 0.168 1.290 3.314 1.733 -2.161 31.922 2.727 0.008 3.226 -3.921 -3.144 32.039 2 AA_C423G382:C4223G3822_BB A 3 ? B 22 ? A 2 ? B 23 ? 1 A G38 2 1_555 B C42 11 1_555 A C42 1 1_555 B DG 12 1_555 -0.644 1.694 3.521 -2.699 -12.736 35.502 4.264 0.646 2.810 -20.072 4.254 37.742 3 AA_G382C421:DG24C4223_BB A 2 ? B 23 ? A 1 ? B 24 ? 1 A C42 1 1_555 B DG 12 1_555 C DG 12 1_555 D C42 1 1_555 0.022 1.394 2.960 0.000 -8.215 31.829 3.667 -0.038 2.532 -14.676 0.001 32.845 4 AC_C421DG112:C42113DG24_DB A 1 ? B 24 ? C 112 ? D 113 ? 1 C DG 12 1_555 D C42 1 1_555 C C42 11 1_555 D G38 2 1_555 0.368 1.231 3.511 1.800 -9.372 36.258 3.185 -0.330 3.122 -14.747 -2.833 37.452 5 CC_DG112C42111:G38114C42113_DD C 112 ? D 113 ? C 111 ? D 114 ? 1 C C42 11 1_555 D G38 2 1_555 C G38 10 1_555 D C42 3 1_555 -0.213 1.073 3.353 -1.053 -5.265 34.126 2.625 0.196 3.162 -8.904 1.780 34.534 6 CC_C42111G38110:C42115G38114_DD C 111 ? D 114 ? C 110 ? D 115 ? 1 C G38 10 1_555 D C42 3 1_555 C C42 9 1_555 D G38 4 1_555 -0.455 1.603 3.348 -0.301 -15.406 24.667 6.221 0.849 2.021 -32.342 0.632 29.021 7 CC_G38110C42109:G38116C42115_DD C 110 ? D 115 ? C 109 ? D 116 ? 1 A C42 9 1_555 B G38 4 1_555 A G38 10 1_555 B C42 3 1_555 -0.187 -1.518 3.527 -4.393 13.486 24.854 -6.059 -0.592 2.400 28.556 9.302 28.561 8 AA_C429G3810:C4215G3816_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G38 10 1_555 B C42 3 1_555 A C42 11 1_555 B G38 2 1_555 0.316 -1.145 3.138 1.829 6.649 38.685 -2.443 -0.267 2.920 9.941 -2.735 39.272 9 AA_G3810C4211:G3814C4215_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C42 11 1_555 B G38 2 1_555 A DG 12 1_555 B C42 1 1_555 0.187 -1.291 3.924 4.052 11.038 26.692 -5.296 0.630 3.148 22.568 -8.285 29.124 10 AA_C4211DG12:C4213G3814_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A DG 12 1_555 B C42 1 1_555 E C42 1 1_555 F DG 12 1_555 -0.492 -1.340 2.928 -8.674 7.385 36.241 -2.887 -0.214 2.659 11.527 13.538 37.932 11 AE_DG12C42201:DG224C4213_FB A 12 ? B 13 ? E 201 ? F 224 ? 1 E C42 1 1_555 F DG 12 1_555 E G38 2 1_555 F C42 11 1_555 -0.004 -1.606 3.228 4.776 12.141 30.662 -4.630 0.724 2.409 21.764 -8.561 33.261 12 EE_C42201G38202:C42223DG224_FF E 201 ? F 224 ? E 202 ? F 223 ? 1 E G38 2 1_555 F C42 11 1_555 E C42 3 1_555 F G38 10 1_555 0.003 -1.646 3.242 -3.416 5.208 30.018 -4.091 -0.646 2.904 9.921 6.508 30.642 13 EE_G38202C42203:G38222C42223_FF E 202 ? F 223 ? E 203 ? F 222 ? 1 E C42 3 1_555 F G38 10 1_555 E G38 4 1_555 F C42 9 1_555 0.166 -1.604 3.406 0.840 14.809 34.963 -4.274 -0.153 2.547 23.391 -1.327 37.889 14 EE_C42203G38204:C42221G38222_FF E 203 ? F 222 ? E 204 ? F 221 ? 1 C C42 1 1_555 D DG 12 1_555 C G38 2 1_555 D C42 11 1_555 -0.065 -1.373 3.599 -4.224 16.487 27.476 -5.393 -0.631 2.398 31.205 7.995 32.233 15 CC_C42101G38102:C42123DG124_DD C 101 ? D 124 ? C 102 ? D 123 ? 1 C G38 2 1_555 D C42 11 1_555 C C42 3 1_555 D G38 10 1_555 -0.554 -1.666 3.202 -0.578 3.448 37.629 -2.998 0.784 3.050 5.331 0.893 37.786 16 CC_G38102C42103:G38122C42123_DD C 102 ? D 123 ? C 103 ? D 122 ? 1 C C42 3 1_555 D G38 10 1_555 C G38 4 1_555 D C42 9 1_555 0.151 -1.517 3.473 4.117 11.737 28.044 -5.136 0.508 2.636 22.851 -8.015 30.628 17 CC_C42103G38104:C42121G38122_DD C 103 ? D 122 ? C 104 ? D 121 ? 1 E C42 9 1_555 F G38 4 1_555 E G38 10 1_555 F C42 3 1_555 -0.360 -1.294 3.554 -1.489 12.249 36.694 -3.509 0.355 2.999 18.815 2.286 38.645 18 EE_C42209G38210:C42215G38216_FF E 209 ? F 216 ? E 210 ? F 215 ? 1 E G38 10 1_555 F C42 3 1_555 E C42 11 1_555 F G38 2 1_555 0.053 -1.668 3.571 0.425 5.750 29.873 -4.383 -0.013 3.202 11.025 -0.814 30.412 19 EE_G38210C42211:G38214C42215_FF E 210 ? F 215 ? E 211 ? F 214 ? 1 E C42 11 1_555 F G38 2 1_555 E DG 12 1_555 F C42 1 1_555 0.519 -0.931 2.901 -1.720 12.893 32.767 -3.141 -1.072 2.351 21.813 2.909 35.188 20 EE_C42211DG212:C42213G38214_FF E 211 ? F 214 ? E 212 ? F 213 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'A-form duplex' # _atom_sites.entry_id 363D _atom_sites.fract_transf_matrix[1][1] 0.024907 _atom_sites.fract_transf_matrix[1][2] 0.014380 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028760 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003287 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O P # loop_