data_366D # _entry.id 366D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 366D pdb_0000366d 10.2210/pdb366d/pdb RCSB DDF073 ? ? WWPDB D_1000178836 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-04-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 366D _pdbx_database_status.recvd_initial_deposition_date 1997-12-19 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Todd, A.K.' 1 'Adams, A.' 2 'Thorpe, J.H.' 3 'Denny, W.A.' 4 'Cardin, C.J.' 5 # _citation.id primary _citation.title ;Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 42 _citation.page_first 536 _citation.page_last 540 _citation.year 1999 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10052960 _citation.pdbx_database_id_DOI 10.1021/jm980479u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Todd, A.K.' 1 ? primary 'Adams, A.' 2 ? primary 'Thorpe, J.H.' 3 ? primary 'Denny, W.A.' 4 ? primary 'Wakelin, L.P.' 5 ? primary 'Cardin, C.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*(BRU)P*AP*CP*G)-3') ; 1874.087 1 ? ? ? 'COMPLEXED WITH 6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' 2 non-polymer syn '6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' 389.290 2 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(BRU)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGUACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' DA6 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 BRU n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DA6 non-polymer . '6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' 6BR20686 'C18 H21 Br N4 O 2' 389.290 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1001 1001 DC C A . n A 1 2 DG 2 1002 1002 DG G A . n A 1 3 BRU 3 1003 1003 BRU +U A . n A 1 4 DA 4 1004 1004 DA A A . n A 1 5 DC 5 1005 1005 DC C A . n A 1 6 DG 6 1006 1006 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DA6 1 3013 3013 DA6 DA6 A . C 2 DA6 1 3015 3015 DA6 DA6 A . D 3 HOH 1 4001 4001 HOH HOH A . D 3 HOH 2 4002 4002 HOH HOH A . D 3 HOH 3 4003 4003 HOH HOH A . D 3 HOH 4 4004 4004 HOH HOH A . D 3 HOH 5 4005 4005 HOH HOH A . D 3 HOH 6 4006 4006 HOH HOH A . D 3 HOH 7 4007 4007 HOH HOH A . D 3 HOH 8 4008 4008 HOH HOH A . D 3 HOH 9 4009 4009 HOH HOH A . D 3 HOH 10 4010 4010 HOH HOH A . D 3 HOH 11 4011 4011 HOH HOH A . D 3 HOH 12 4012 4012 HOH HOH A . D 3 HOH 13 4013 4013 HOH HOH A . D 3 HOH 14 4014 4014 HOH HOH A . D 3 HOH 15 4015 4015 HOH HOH A . D 3 HOH 16 4017 4017 HOH HOH A . D 3 HOH 17 4018 4018 HOH HOH A . D 3 HOH 18 4019 4019 HOH HOH A . D 3 HOH 19 4020 4020 HOH HOH A . D 3 HOH 20 4022 4022 HOH HOH A . D 3 HOH 21 4023 4023 HOH HOH A . D 3 HOH 22 4024 4024 HOH HOH A . D 3 HOH 23 4025 4025 HOH HOH A . D 3 HOH 24 4026 4026 HOH HOH A . D 3 HOH 25 4027 4027 HOH HOH A . D 3 HOH 26 4028 4028 HOH HOH A . D 3 HOH 27 4029 4029 HOH HOH A . D 3 HOH 28 4030 4030 HOH HOH A . D 3 HOH 29 4131 4131 HOH HOH A . D 3 HOH 30 4132 4132 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXS phasing . ? 1 SHELXL-96 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 366D _cell.length_a 30.110 _cell.length_b 30.110 _cell.length_c 39.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 366D _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 172 # _exptl.entry_id 366D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 54.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'pH 6.5, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-10-14 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 366D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.0 _reflns.d_resolution_high 1.30 _reflns.number_obs 9362 _reflns.number_all ? _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.91 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 366D _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 8867 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 90.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.185 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 3275 _refine.ls_number_restraints 8013 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 366D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen 401.5 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 215 _refine_hist.pdbx_number_atoms_ligand 91 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 336 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.002 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 366D _pdbx_refine.R_factor_all_no_cutoff 0.185 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.165 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 6253 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 366D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 366D _struct.title '1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 366D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DRUG INTERCALATION, MAJOR GROOVE BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 366D _struct_ref.pdbx_db_accession 366D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 366D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 366D _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1006 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1006 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.1100000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A BRU 3 P A ? A DG 1002 A BRU 1003 1_555 ? ? ? ? ? ? ? 1.638 ? ? covale2 covale both ? A DG 2 "O3'" ? ? ? 1_555 A BRU 3 P B ? A DG 1002 A BRU 1003 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale3 covale both ? A BRU 3 "O3'" B ? ? 1_555 A DA 4 P B ? A BRU 1003 A DA 1004 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale4 covale both ? A BRU 3 "O3'" A ? ? 1_555 A DA 4 P A ? A BRU 1003 A DA 1004 1_555 ? ? ? ? ? ? ? 1.602 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A BRU 3 N3 A ? ? 1_555 A DA 4 N1 ? ? A BRU 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A BRU 3 O4 A ? ? 1_555 A DA 4 N6 ? ? A BRU 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A BRU 3 N3 A ? A DA 1004 A BRU 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A BRU 3 O4 A ? A DA 1004 A BRU 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DA6 3013 ? 8 'BINDING SITE FOR RESIDUE DA6 A 3013' AC2 Software A DA6 3015 ? 5 'BINDING SITE FOR RESIDUE DA6 A 3015' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 1 ? DC A 1001 . ? 4_655 ? 2 AC1 8 DG A 2 ? DG A 1002 . ? 4_655 ? 3 AC1 8 DG A 2 ? DG A 1002 . ? 6_544 ? 4 AC1 8 DA A 4 ? DA A 1004 . ? 5_555 ? 5 AC1 8 DC A 5 ? DC A 1005 . ? 1_555 ? 6 AC1 8 DG A 6 ? DG A 1006 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH A 4012 . ? 1_555 ? 8 AC1 8 HOH D . ? HOH A 4030 . ? 5_555 ? 9 AC2 5 DC A 1 ? DC A 1001 . ? 1_445 ? 10 AC2 5 DC A 1 ? DC A 1001 . ? 4_655 ? 11 AC2 5 DG A 6 ? DG A 1006 . ? 4_545 ? 12 AC2 5 DG A 6 ? DG A 1006 . ? 1_555 ? 13 AC2 5 HOH D . ? HOH A 4002 . ? 2_545 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.512 1.420 0.092 0.011 N 2 1 P A DA 1004 ? A OP1 A DA 1004 ? A 1.602 1.485 0.117 0.017 N 3 1 P A DA 1004 ? B OP2 A DA 1004 ? B 1.603 1.485 0.118 0.017 N 4 1 P A DG 1006 ? ? OP1 A DG 1006 ? ? 1.598 1.485 0.113 0.017 N 5 1 C8 A DG 1006 ? ? N9 A DG 1006 ? ? 1.423 1.374 0.049 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 123.80 114.30 9.50 1.40 N 2 1 C4 A DC 1001 ? ? C5 A DC 1001 ? ? C6 A DC 1001 ? ? 114.30 117.40 -3.10 0.50 N 3 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 101.47 108.00 -6.53 0.70 N 4 1 OP1 A DA 1004 ? B P A DA 1004 ? B OP2 A DA 1004 ? B 133.05 119.60 13.45 1.50 N 5 1 "O5'" A DA 1004 ? ? P A DA 1004 ? A OP2 A DA 1004 ? A 118.36 110.70 7.66 1.20 N 6 1 "O5'" A DA 1004 ? ? P A DA 1004 ? B OP2 A DA 1004 ? B 97.94 105.70 -7.76 0.90 N 7 1 P A DA 1004 ? B "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? 101.69 120.90 -19.21 1.60 N 8 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 100.55 108.00 -7.45 0.70 N 9 1 C4 A DA 1004 ? ? C5 A DA 1004 ? ? C6 A DA 1004 ? ? 120.69 117.00 3.69 0.50 N 10 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? N1 A DC 1005 ? ? 110.35 108.30 2.05 0.30 N 11 1 C6 A DC 1005 ? ? N1 A DC 1005 ? ? C2 A DC 1005 ? ? 124.45 120.30 4.15 0.40 N 12 1 C5 A DC 1005 ? ? C6 A DC 1005 ? ? N1 A DC 1005 ? ? 116.20 121.00 -4.80 0.50 N 13 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? N9 A DG 1006 ? ? 101.36 108.00 -6.64 0.70 N 14 1 C5 A DG 1006 ? ? N7 A DG 1006 ? ? C8 A DG 1006 ? ? 108.00 104.30 3.70 0.50 N 15 1 N7 A DG 1006 ? ? C8 A DG 1006 ? ? N9 A DG 1006 ? ? 109.80 113.10 -3.30 0.50 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id BRU _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id BRU _pdbx_struct_mod_residue.auth_seq_id 1003 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, GROOVE BINDER' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A DA6 3015 ? C DA6 . 2 1 A DA6 3015 ? C DA6 . 3 1 A DA6 3015 ? C DA6 . 4 1 A DA6 3015 ? C DA6 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DA6 C1 C Y N 70 DA6 C2 C Y N 71 DA6 C3 C Y N 72 DA6 C4 C Y N 73 DA6 C5 C Y N 74 DA6 C6 C Y N 75 DA6 C7 C Y N 76 DA6 C8 C Y N 77 DA6 C9 C Y N 78 DA6 N9 N N N 79 DA6 N10 N Y N 80 DA6 C11 C Y N 81 DA6 C12 C Y N 82 DA6 C13 C Y N 83 DA6 C14 C Y N 84 DA6 BR BR N N 85 DA6 CD1 C N N 86 DA6 OD1 O N N 87 DA6 ND1 N N N 88 DA6 CD2 C N N 89 DA6 CD3 C N N 90 DA6 ND2 N N N 91 DA6 CD7 C N N 92 DA6 CD8 C N N 93 DA6 H1 H N N 94 DA6 H2 H N N 95 DA6 H3 H N N 96 DA6 H5 H N N 97 DA6 H7 H N N 98 DA6 H8 H N N 99 DA6 HN91 H N N 100 DA6 HN92 H N N 101 DA6 HN93 H N N 102 DA6 H10 H N N 103 DA6 HND1 H N N 104 DA6 HD21 H N N 105 DA6 HD22 H N N 106 DA6 HD31 H N N 107 DA6 HD32 H N N 108 DA6 HD71 H N N 109 DA6 HD72 H N N 110 DA6 HD73 H N N 111 DA6 HD81 H N N 112 DA6 HD82 H N N 113 DA6 HD83 H N N 114 DC OP3 O N N 115 DC P P N N 116 DC OP1 O N N 117 DC OP2 O N N 118 DC "O5'" O N N 119 DC "C5'" C N N 120 DC "C4'" C N R 121 DC "O4'" O N N 122 DC "C3'" C N S 123 DC "O3'" O N N 124 DC "C2'" C N N 125 DC "C1'" C N R 126 DC N1 N N N 127 DC C2 C N N 128 DC O2 O N N 129 DC N3 N N N 130 DC C4 C N N 131 DC N4 N N N 132 DC C5 C N N 133 DC C6 C N N 134 DC HOP3 H N N 135 DC HOP2 H N N 136 DC "H5'" H N N 137 DC "H5''" H N N 138 DC "H4'" H N N 139 DC "H3'" H N N 140 DC "HO3'" H N N 141 DC "H2'" H N N 142 DC "H2''" H N N 143 DC "H1'" H N N 144 DC H41 H N N 145 DC H42 H N N 146 DC H5 H N N 147 DC H6 H N N 148 DG OP3 O N N 149 DG P P N N 150 DG OP1 O N N 151 DG OP2 O N N 152 DG "O5'" O N N 153 DG "C5'" C N N 154 DG "C4'" C N R 155 DG "O4'" O N N 156 DG "C3'" C N S 157 DG "O3'" O N N 158 DG "C2'" C N N 159 DG "C1'" C N R 160 DG N9 N Y N 161 DG C8 C Y N 162 DG N7 N Y N 163 DG C5 C Y N 164 DG C6 C N N 165 DG O6 O N N 166 DG N1 N N N 167 DG C2 C N N 168 DG N2 N N N 169 DG N3 N N N 170 DG C4 C Y N 171 DG HOP3 H N N 172 DG HOP2 H N N 173 DG "H5'" H N N 174 DG "H5''" H N N 175 DG "H4'" H N N 176 DG "H3'" H N N 177 DG "HO3'" H N N 178 DG "H2'" H N N 179 DG "H2''" H N N 180 DG "H1'" H N N 181 DG H8 H N N 182 DG H1 H N N 183 DG H21 H N N 184 DG H22 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DA6 C1 C2 doub Y N 73 DA6 C1 C11 sing Y N 74 DA6 C1 H1 sing N N 75 DA6 C2 C3 sing Y N 76 DA6 C2 H2 sing N N 77 DA6 C3 C4 doub Y N 78 DA6 C3 H3 sing N N 79 DA6 C4 C12 sing Y N 80 DA6 C4 CD1 sing N N 81 DA6 C5 C6 doub Y N 82 DA6 C5 C14 sing Y N 83 DA6 C5 H5 sing N N 84 DA6 C6 C7 sing Y N 85 DA6 C6 BR sing N N 86 DA6 C7 C8 doub Y N 87 DA6 C7 H7 sing N N 88 DA6 C8 C13 sing Y N 89 DA6 C8 H8 sing N N 90 DA6 C9 N9 sing N N 91 DA6 C9 C11 doub Y N 92 DA6 C9 C13 sing Y N 93 DA6 N9 HN91 sing N N 94 DA6 N9 HN92 sing N N 95 DA6 N9 HN93 sing N N 96 DA6 N10 C12 doub Y N 97 DA6 N10 C14 sing Y N 98 DA6 N10 H10 sing N N 99 DA6 C11 C12 sing Y N 100 DA6 C13 C14 doub Y N 101 DA6 CD1 OD1 doub N N 102 DA6 CD1 ND1 sing N N 103 DA6 ND1 CD2 sing N N 104 DA6 ND1 HND1 sing N N 105 DA6 CD2 CD3 sing N N 106 DA6 CD2 HD21 sing N N 107 DA6 CD2 HD22 sing N N 108 DA6 CD3 ND2 sing N N 109 DA6 CD3 HD31 sing N N 110 DA6 CD3 HD32 sing N N 111 DA6 ND2 CD7 sing N N 112 DA6 ND2 CD8 sing N N 113 DA6 CD7 HD71 sing N N 114 DA6 CD7 HD72 sing N N 115 DA6 CD7 HD73 sing N N 116 DA6 CD8 HD81 sing N N 117 DA6 CD8 HD82 sing N N 118 DA6 CD8 HD83 sing N N 119 DC OP3 P sing N N 120 DC OP3 HOP3 sing N N 121 DC P OP1 doub N N 122 DC P OP2 sing N N 123 DC P "O5'" sing N N 124 DC OP2 HOP2 sing N N 125 DC "O5'" "C5'" sing N N 126 DC "C5'" "C4'" sing N N 127 DC "C5'" "H5'" sing N N 128 DC "C5'" "H5''" sing N N 129 DC "C4'" "O4'" sing N N 130 DC "C4'" "C3'" sing N N 131 DC "C4'" "H4'" sing N N 132 DC "O4'" "C1'" sing N N 133 DC "C3'" "O3'" sing N N 134 DC "C3'" "C2'" sing N N 135 DC "C3'" "H3'" sing N N 136 DC "O3'" "HO3'" sing N N 137 DC "C2'" "C1'" sing N N 138 DC "C2'" "H2'" sing N N 139 DC "C2'" "H2''" sing N N 140 DC "C1'" N1 sing N N 141 DC "C1'" "H1'" sing N N 142 DC N1 C2 sing N N 143 DC N1 C6 sing N N 144 DC C2 O2 doub N N 145 DC C2 N3 sing N N 146 DC N3 C4 doub N N 147 DC C4 N4 sing N N 148 DC C4 C5 sing N N 149 DC N4 H41 sing N N 150 DC N4 H42 sing N N 151 DC C5 C6 doub N N 152 DC C5 H5 sing N N 153 DC C6 H6 sing N N 154 DG OP3 P sing N N 155 DG OP3 HOP3 sing N N 156 DG P OP1 doub N N 157 DG P OP2 sing N N 158 DG P "O5'" sing N N 159 DG OP2 HOP2 sing N N 160 DG "O5'" "C5'" sing N N 161 DG "C5'" "C4'" sing N N 162 DG "C5'" "H5'" sing N N 163 DG "C5'" "H5''" sing N N 164 DG "C4'" "O4'" sing N N 165 DG "C4'" "C3'" sing N N 166 DG "C4'" "H4'" sing N N 167 DG "O4'" "C1'" sing N N 168 DG "C3'" "O3'" sing N N 169 DG "C3'" "C2'" sing N N 170 DG "C3'" "H3'" sing N N 171 DG "O3'" "HO3'" sing N N 172 DG "C2'" "C1'" sing N N 173 DG "C2'" "H2'" sing N N 174 DG "C2'" "H2''" sing N N 175 DG "C1'" N9 sing N N 176 DG "C1'" "H1'" sing N N 177 DG N9 C8 sing Y N 178 DG N9 C4 sing Y N 179 DG C8 N7 doub Y N 180 DG C8 H8 sing N N 181 DG N7 C5 sing Y N 182 DG C5 C6 sing N N 183 DG C5 C4 doub Y N 184 DG C6 O6 doub N N 185 DG C6 N1 sing N N 186 DG N1 C2 sing N N 187 DG N1 H1 sing N N 188 DG C2 N2 sing N N 189 DG C2 N3 doub N N 190 DG N2 H21 sing N N 191 DG N2 H22 sing N N 192 DG N3 C4 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 # _ndb_struct_conf_na.entry_id 366D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 4_655 0.121 -0.193 0.276 1.172 -11.502 -1.970 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1 1 A DG 2 1_555 A DC 5 4_655 -0.199 -0.122 0.062 -5.688 -5.267 -0.997 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1 1 A BRU 3 1_555 A DA 4 4_655 0.162 -0.096 -0.065 3.068 -7.240 0.926 3 A_BRU1003:DA1004_A A 1003 ? A 1004 ? 20 1 1 A DA 4 1_555 A BRU 3 4_655 -0.162 -0.096 -0.065 -3.068 -7.240 0.926 4 A_DA1004:BRU1003_A A 1004 ? A 1003 ? 20 1 1 A DC 5 1_555 A DG 2 4_655 0.199 -0.122 0.062 5.688 -5.266 -0.997 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1 1 A DG 6 1_555 A DC 1 4_655 -0.121 -0.193 0.276 -1.172 -11.502 -1.970 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.170 0.434 6.807 1.756 2.754 23.480 -0.849 0.802 6.807 6.725 -4.288 23.703 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ? 1 A DG 2 1_555 A DC 5 4_655 A BRU 3 1_555 A DA 4 4_655 -0.462 0.083 3.144 0.526 3.623 30.083 -0.543 0.985 3.124 6.947 -1.008 30.300 2 AA_DG1002BRU1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ? 1 A BRU 3 1_555 A DA 4 4_655 A DA 4 1_555 A BRU 3 4_655 0.000 1.678 3.296 0.000 -3.997 44.966 2.539 0.000 3.144 -5.213 0.000 45.134 3 AA_BRU1003DA1004:BRU1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ? 1 A DA 4 1_555 A BRU 3 4_655 A DC 5 1_555 A DG 2 4_655 0.462 0.083 3.144 -0.526 3.623 30.083 -0.543 -0.985 3.124 6.947 1.008 30.300 4 AA_DA1004DC1005:DG1002BRU1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ? 1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.170 0.434 6.807 -1.756 2.753 23.480 -0.849 -0.802 6.807 6.724 4.288 23.703 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ? # _atom_sites.entry_id 366D _atom_sites.fract_transf_matrix[1][1] 0.033212 _atom_sites.fract_transf_matrix[1][2] 0.019175 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038349 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025278 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C H N O P # loop_