data_367D # _entry.id 367D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 367D pdb_0000367d 10.2210/pdb367d/pdb NDB DDF074 ? ? RCSB RCSB001523 ? ? WWPDB D_1000001523 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-03-04 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 367D _pdbx_database_status.recvd_initial_deposition_date 1997-12-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Todd, A.K.' 1 'Adams, A.' 2 'Thorpe, J.H.' 3 'Denny, W.A.' 4 'Cardin, C.J.' 5 # _citation.id primary _citation.title ;Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethlyamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5Br-U)ACG)2 at 1.3-angstrom resolution ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 42 _citation.page_first 536 _citation.page_last 540 _citation.year 1999 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10052960 _citation.pdbx_database_id_DOI 10.1021/jm980479u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Todd, A.K.' 1 ? primary 'Adams, A.' 2 ? primary 'Thorpe, J.H.' 3 ? primary 'Denny, W.A.' 4 ? primary 'Wakelin, L.P.G.' 5 ? primary 'Cardin, C.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man "5'-D(*CP*GP*(BRU)P*AP*CP*G)-3'" 1795.191 2 ? ? ? ? 2 non-polymer syn '5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' 389.290 3 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 4 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DU)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGUACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' DA5 3 'BROMIDE ION' BR 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DU n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DA5 non-polymer . '5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE' 5BR20686 'C18 H21 Br N4 O 2' 389.290 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DU 3 3 3 DU U A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DU 3 9 9 DU U B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DA5 1 14 14 DA5 DA5 A . D 3 BR 1 15 3 BR BRO A . E 2 DA5 1 13 13 DA5 DA5 B . F 2 DA5 1 15 15 DA5 DA5 B . G 3 BR 1 16 9 BR BRO B . H 4 HOH 1 17 17 HOH HOH A . H 4 HOH 2 18 18 HOH HOH A . H 4 HOH 3 19 19 HOH HOH A . H 4 HOH 4 20 20 HOH HOH A . H 4 HOH 5 24 24 HOH HOH A . H 4 HOH 6 26 26 HOH HOH A . H 4 HOH 7 27 27 HOH HOH A . H 4 HOH 8 29 29 HOH HOH A . H 4 HOH 9 31 31 HOH HOH A . H 4 HOH 10 32 32 HOH HOH A . H 4 HOH 11 33 33 HOH HOH A . H 4 HOH 12 34 34 HOH HOH A . H 4 HOH 13 37 37 HOH HOH A . H 4 HOH 14 38 38 HOH HOH A . H 4 HOH 15 39 39 HOH HOH A . H 4 HOH 16 45 45 HOH HOH A . H 4 HOH 17 47 47 HOH HOH A . H 4 HOH 18 48 48 HOH HOH A . H 4 HOH 19 49 49 HOH HOH A . H 4 HOH 20 50 50 HOH HOH A . H 4 HOH 21 51 51 HOH HOH A . H 4 HOH 22 53 53 HOH HOH A . H 4 HOH 23 54 54 HOH HOH A . H 4 HOH 24 58 58 HOH HOH A . H 4 HOH 25 59 59 HOH HOH A . H 4 HOH 26 62 62 HOH HOH A . H 4 HOH 27 63 63 HOH HOH A . H 4 HOH 28 64 64 HOH HOH A . H 4 HOH 29 66 66 HOH HOH A . H 4 HOH 30 72 72 HOH HOH A . H 4 HOH 31 74 74 HOH HOH A . H 4 HOH 32 75 75 HOH HOH A . H 4 HOH 33 76 76 HOH HOH A . H 4 HOH 34 77 77 HOH HOH A . H 4 HOH 35 82 82 HOH HOH A . H 4 HOH 36 84 84 HOH HOH A . H 4 HOH 37 85 85 HOH HOH A . H 4 HOH 38 86 86 HOH HOH A . H 4 HOH 39 87 87 HOH HOH A . H 4 HOH 40 90 90 HOH HOH A . H 4 HOH 41 92 92 HOH HOH A . H 4 HOH 42 93 93 HOH HOH A . H 4 HOH 43 94 94 HOH HOH A . H 4 HOH 44 95 95 HOH HOH A . H 4 HOH 45 97 97 HOH HOH A . H 4 HOH 46 98 98 HOH HOH A . H 4 HOH 47 100 100 HOH HOH A . H 4 HOH 48 101 101 HOH HOH A . H 4 HOH 49 106 106 HOH HOH A . H 4 HOH 50 108 108 HOH HOH A . H 4 HOH 51 111 111 HOH HOH A . H 4 HOH 52 112 112 HOH HOH A . H 4 HOH 53 113 113 HOH HOH A . H 4 HOH 54 114 114 HOH HOH A . H 4 HOH 55 116 116 HOH HOH A . H 4 HOH 56 118 118 HOH HOH A . H 4 HOH 57 119 119 HOH HOH A . H 4 HOH 58 122 122 HOH HOH A . H 4 HOH 59 124 124 HOH HOH A . H 4 HOH 60 125 125 HOH HOH A . H 4 HOH 61 126 126 HOH HOH A . I 4 HOH 1 17 16 HOH HOH B . I 4 HOH 2 18 21 HOH HOH B . I 4 HOH 3 19 22 HOH HOH B . I 4 HOH 4 20 23 HOH HOH B . I 4 HOH 5 21 25 HOH HOH B . I 4 HOH 6 22 28 HOH HOH B . I 4 HOH 7 23 30 HOH HOH B . I 4 HOH 8 24 35 HOH HOH B . I 4 HOH 9 25 36 HOH HOH B . I 4 HOH 10 26 40 HOH HOH B . I 4 HOH 11 27 41 HOH HOH B . I 4 HOH 12 28 42 HOH HOH B . I 4 HOH 13 29 43 HOH HOH B . I 4 HOH 14 30 44 HOH HOH B . I 4 HOH 15 31 46 HOH HOH B . I 4 HOH 16 32 52 HOH HOH B . I 4 HOH 17 33 55 HOH HOH B . I 4 HOH 18 34 56 HOH HOH B . I 4 HOH 19 35 57 HOH HOH B . I 4 HOH 20 36 60 HOH HOH B . I 4 HOH 21 37 61 HOH HOH B . I 4 HOH 22 38 65 HOH HOH B . I 4 HOH 23 39 67 HOH HOH B . I 4 HOH 24 40 68 HOH HOH B . I 4 HOH 25 41 69 HOH HOH B . I 4 HOH 26 42 70 HOH HOH B . I 4 HOH 27 43 71 HOH HOH B . I 4 HOH 28 44 73 HOH HOH B . I 4 HOH 29 45 78 HOH HOH B . I 4 HOH 30 46 79 HOH HOH B . I 4 HOH 31 47 80 HOH HOH B . I 4 HOH 32 48 81 HOH HOH B . I 4 HOH 33 49 83 HOH HOH B . I 4 HOH 34 50 88 HOH HOH B . I 4 HOH 35 51 89 HOH HOH B . I 4 HOH 36 52 91 HOH HOH B . I 4 HOH 37 53 96 HOH HOH B . I 4 HOH 38 54 99 HOH HOH B . I 4 HOH 39 55 102 HOH HOH B . I 4 HOH 40 56 103 HOH HOH B . I 4 HOH 41 57 104 HOH HOH B . I 4 HOH 42 58 105 HOH HOH B . I 4 HOH 43 59 107 HOH HOH B . I 4 HOH 44 60 109 HOH HOH B . I 4 HOH 45 61 110 HOH HOH B . I 4 HOH 46 62 115 HOH HOH B . I 4 HOH 47 63 117 HOH HOH B . I 4 HOH 48 64 120 HOH HOH B . I 4 HOH 49 65 121 HOH HOH B . I 4 HOH 50 66 123 HOH HOH B . I 4 HOH 51 67 127 HOH HOH B . I 4 HOH 52 68 128 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B DA5 15 ? N9 ? F DA5 1 N9 2 1 N 1 B DA5 15 ? CD1 ? F DA5 1 CD1 3 1 N 1 B DA5 15 ? OD1 ? F DA5 1 OD1 4 1 N 1 B DA5 15 ? ND1 ? F DA5 1 ND1 5 1 N 1 B DA5 15 ? CD2 ? F DA5 1 CD2 6 1 N 1 B DA5 15 ? CD3 ? F DA5 1 CD3 7 1 N 1 B DA5 15 ? ND2 ? F DA5 1 ND2 8 1 N 1 B DA5 15 ? CD7 ? F DA5 1 CD7 9 1 N 1 B DA5 15 ? CD8 ? F DA5 1 CD8 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXL refinement . ? 3 # _cell.entry_id 367D _cell.length_a 30.096 _cell.length_b 30.096 _cell.length_c 39.547 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 367D _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 # _exptl.entry_id 367D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 CACODYLATE 4 5 6 1 3 1 MG2+ 7 8 9 1 4 1 SPERMINE 10 11 12 1 5 1 MPD 13 14 15 # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-04-20 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 367D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.000 _reflns.d_resolution_high 1.200 _reflns.number_obs 11570 _reflns.number_all ? _reflns.percent_possible_obs 92.300 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.242 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 367D _refine.ls_number_reflns_obs 10983 _refine.ls_number_reflns_all 10983 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.000 _refine.ls_d_res_high 1.200 _refine.ls_percent_reflns_obs 87.700 _refine.ls_R_factor_obs 0.178 _refine.ls_R_factor_all 0.178 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 3299 _refine.ls_number_restraints 7900 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method NONE _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 367D _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 415.00 _refine_analyze.occupancy_sum_non_hydrogen 0.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 238 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 431 _refine_hist.d_res_high 1.200 _refine_hist.d_res_low 100.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 367D _pdbx_refine.R_factor_all_no_cutoff 0.178 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.159 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 8332 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 367D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 367D _struct.title '1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 367D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 367D _struct_ref.pdbx_db_accession 367D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 367D A 1 ? 6 ? 367D 1 ? 6 ? 1 6 2 1 367D B 1 ? 6 ? 367D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DU 3 C5 ? ? ? 1_555 D BR . BR ? ? A DU 3 A BR 15 1_555 ? ? ? ? ? ? ? 1.949 ? ? covale2 covale one ? B DU 3 C5 ? ? ? 1_555 G BR . BR ? ? B DU 9 B BR 16 1_555 ? ? ? ? ? ? ? 1.958 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DU 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DU 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DU 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DU 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DU 3 N3 ? ? A DA 4 B DU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DU 3 O4 ? ? A DA 4 B DU 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B DA5 13 ? 6 'BINDING SITE FOR RESIDUE DA5 B 13' AC2 Software A DA5 14 ? 7 'BINDING SITE FOR RESIDUE DA5 A 14' AC3 Software B DA5 15 ? 5 'BINDING SITE FOR RESIDUE DA5 B 15' AC4 Software A BR 15 ? 1 'BINDING SITE FOR RESIDUE BR A 15' AC5 Software B BR 16 ? 2 'BINDING SITE FOR RESIDUE BR B 16' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 5 ? DC A 5 . ? 1_555 ? 2 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 6 DC B 1 ? DC B 7 . ? 1_555 ? 4 AC1 6 DG B 2 ? DG B 8 . ? 3_654 ? 5 AC1 6 DG B 2 ? DG B 8 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH B 27 . ? 2_545 ? 7 AC2 7 DC A 1 ? DC A 1 . ? 1_555 ? 8 AC2 7 DG A 2 ? DG A 2 . ? 1_555 ? 9 AC2 7 DG A 2 ? DG A 2 . ? 3_664 ? 10 AC2 7 HOH H . ? HOH A 34 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH A 106 . ? 1_555 ? 12 AC2 7 DC B 5 ? DC B 11 . ? 1_555 ? 13 AC2 7 DG B 6 ? DG B 12 . ? 1_555 ? 14 AC3 5 DC A 1 ? DC A 1 . ? 1_555 ? 15 AC3 5 DG A 6 ? DG A 6 . ? 1_665 ? 16 AC3 5 DC B 1 ? DC B 7 . ? 1_665 ? 17 AC3 5 DG B 6 ? DG B 12 . ? 1_555 ? 18 AC3 5 HOH I . ? HOH B 39 . ? 1_555 ? 19 AC4 1 DU A 3 ? DU A 3 . ? 1_555 ? 20 AC5 2 HOH H . ? HOH A 51 . ? 2_655 ? 21 AC5 2 DU B 3 ? DU B 9 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 BR _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 BR _pdbx_validate_symm_contact.auth_seq_id_1 16 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 51 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.510 1.420 0.090 0.011 N 2 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.554 1.512 0.042 0.007 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.500 1.420 0.080 0.011 N 4 1 "C5'" A DU 3 ? ? "C4'" A DU 3 ? ? 1.570 1.512 0.058 0.007 N 5 1 "O4'" A DU 3 ? ? "C1'" A DU 3 ? ? 1.516 1.420 0.096 0.011 N 6 1 "C1'" A DU 3 ? ? N1 A DU 3 ? ? 1.381 1.468 -0.087 0.014 N 7 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 8 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? 1.490 1.420 0.070 0.011 N 9 1 C5 A DA 4 ? ? N7 A DA 4 ? ? 1.433 1.388 0.045 0.006 N 10 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.564 1.512 0.052 0.007 N 11 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.581 1.512 0.069 0.007 N 12 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? 1.504 1.420 0.084 0.011 N 13 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.507 1.420 0.087 0.011 N 14 1 "C5'" B DU 9 ? ? "C4'" B DU 9 ? ? 1.566 1.512 0.054 0.007 N 15 1 "O4'" B DU 9 ? ? "C1'" B DU 9 ? ? 1.521 1.420 0.101 0.011 N 16 1 "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 1.583 1.512 0.071 0.007 N 17 1 "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 1.576 1.512 0.064 0.007 N 18 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.589 1.512 0.077 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 125.80 114.30 11.50 1.40 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.49 108.00 -4.51 0.70 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 101.73 108.00 -6.27 0.70 N 4 1 "O5'" A DU 3 ? ? "C5'" A DU 3 ? ? "C4'" A DU 3 ? ? 101.69 109.40 -7.71 0.80 N 5 1 "C3'" A DU 3 ? ? "C2'" A DU 3 ? ? "C1'" A DU 3 ? ? 96.20 102.40 -6.20 0.80 N 6 1 "O4'" A DU 3 ? ? "C1'" A DU 3 ? ? "C2'" A DU 3 ? ? 99.27 105.90 -6.63 0.80 N 7 1 "O4'" A DU 3 ? ? "C1'" A DU 3 ? ? N1 A DU 3 ? ? 99.17 108.00 -8.83 0.70 N 8 1 C6 A DU 3 ? ? N1 A DU 3 ? ? C2 A DU 3 ? ? 117.05 121.00 -3.95 0.60 N 9 1 C2 A DU 3 ? ? N3 A DU 3 ? ? C4 A DU 3 ? ? 132.13 127.00 5.13 0.60 N 10 1 N3 A DU 3 ? ? C4 A DU 3 ? ? C5 A DU 3 ? ? 110.73 114.60 -3.87 0.60 N 11 1 C5 A DU 3 ? ? C6 A DU 3 ? ? N1 A DU 3 ? ? 127.95 122.70 5.25 0.50 N 12 1 N3 A DU 3 ? ? C4 A DU 3 ? ? O4 A DU 3 ? ? 129.09 119.40 9.69 0.70 N 13 1 C5 A DU 3 ? ? C4 A DU 3 ? ? O4 A DU 3 ? ? 120.18 125.90 -5.72 0.60 N 14 1 OP1 A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 154.69 119.60 35.09 1.50 N 15 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP1 A DA 4 ? ? 94.64 105.70 -11.06 0.90 N 16 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 98.58 105.70 -7.12 0.90 N 17 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 101.35 109.40 -8.05 0.80 N 18 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 100.82 108.00 -7.18 0.70 N 19 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.76 129.30 -3.54 0.50 N 20 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.34 108.30 2.04 0.30 N 21 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 116.01 119.90 -3.89 0.50 N 22 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 116.83 121.00 -4.17 0.50 N 23 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 112.82 118.00 -5.18 0.70 N 24 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 101.16 108.00 -6.84 0.70 N 25 1 N1 B DC 7 ? ? "C1'" B DC 7 ? ? "C2'" B DC 7 ? ? 125.46 114.30 11.16 1.40 N 26 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 102.29 108.00 -5.71 0.70 N 27 1 C5 B DC 7 ? ? C4 B DC 7 ? ? N4 B DC 7 ? ? 115.50 120.20 -4.70 0.70 N 28 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 98.96 108.00 -9.04 0.70 N 29 1 N3 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 125.38 128.60 -3.22 0.50 N 30 1 "O5'" B DU 9 ? ? "C5'" B DU 9 ? ? "C4'" B DU 9 ? ? 101.61 109.40 -7.79 0.80 N 31 1 "C3'" B DU 9 ? ? "C2'" B DU 9 ? ? "C1'" B DU 9 ? ? 95.97 102.40 -6.43 0.80 N 32 1 "O4'" B DU 9 ? ? "C1'" B DU 9 ? ? "C2'" B DU 9 ? ? 99.18 105.90 -6.72 0.80 N 33 1 "O4'" B DU 9 ? ? "C1'" B DU 9 ? ? N1 B DU 9 ? ? 98.06 108.00 -9.94 0.70 N 34 1 N1 B DU 9 ? ? C2 B DU 9 ? ? N3 B DU 9 ? ? 111.19 114.90 -3.71 0.60 N 35 1 C2 B DU 9 ? ? N3 B DU 9 ? ? C4 B DU 9 ? ? 132.19 127.00 5.19 0.60 N 36 1 C5 B DU 9 ? ? C6 B DU 9 ? ? N1 B DU 9 ? ? 127.67 122.70 4.97 0.50 N 37 1 N3 B DU 9 ? ? C4 B DU 9 ? ? O4 B DU 9 ? ? 128.49 119.40 9.09 0.70 N 38 1 C5 B DU 9 ? ? C4 B DU 9 ? ? O4 B DU 9 ? ? 118.60 125.90 -7.30 0.60 N 39 1 "C3'" B DU 9 ? ? "O3'" B DU 9 ? ? P B DA 10 ? ? 127.04 119.70 7.34 1.20 Y 40 1 OP1 B DA 10 ? ? P B DA 10 ? ? OP2 B DA 10 ? ? 134.00 119.60 14.40 1.50 N 41 1 "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 102.42 109.40 -6.98 0.80 N 42 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 100.85 108.00 -7.15 0.70 N 43 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.66 108.30 2.36 0.30 N 44 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 114.82 119.90 -5.08 0.50 N 45 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 121.39 117.40 3.99 0.50 N 46 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 115.68 121.00 -5.32 0.50 N 47 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 102.74 108.00 -5.26 0.70 N 48 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 115.90 111.90 4.00 0.50 N 49 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 115.69 111.50 4.19 0.50 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BR BR BR N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DA5 C1 C Y N 38 DA5 C2 C Y N 39 DA5 C3 C Y N 40 DA5 C4 C Y N 41 DA5 C5 C Y N 42 DA5 C6 C Y N 43 DA5 C7 C Y N 44 DA5 C8 C Y N 45 DA5 C9 C Y N 46 DA5 N9 N N N 47 DA5 N10 N Y N 48 DA5 C11 C Y N 49 DA5 C12 C Y N 50 DA5 C13 C Y N 51 DA5 C14 C Y N 52 DA5 BR BR N N 53 DA5 CD1 C N N 54 DA5 OD1 O N N 55 DA5 ND1 N N N 56 DA5 CD2 C N N 57 DA5 CD3 C N N 58 DA5 ND2 N N N 59 DA5 CD7 C N N 60 DA5 CD8 C N N 61 DA5 H1 H N N 62 DA5 H2 H N N 63 DA5 H3 H N N 64 DA5 H6 H N N 65 DA5 H7 H N N 66 DA5 H8 H N N 67 DA5 HN91 H N N 68 DA5 HN92 H N N 69 DA5 HN93 H N N 70 DA5 H10 H N N 71 DA5 HND1 H N N 72 DA5 HD21 H N N 73 DA5 HD22 H N N 74 DA5 HD31 H N N 75 DA5 HD32 H N N 76 DA5 HD71 H N N 77 DA5 HD72 H N N 78 DA5 HD73 H N N 79 DA5 HD81 H N N 80 DA5 HD82 H N N 81 DA5 HD83 H N N 82 DC OP3 O N N 83 DC P P N N 84 DC OP1 O N N 85 DC OP2 O N N 86 DC "O5'" O N N 87 DC "C5'" C N N 88 DC "C4'" C N R 89 DC "O4'" O N N 90 DC "C3'" C N S 91 DC "O3'" O N N 92 DC "C2'" C N N 93 DC "C1'" C N R 94 DC N1 N N N 95 DC C2 C N N 96 DC O2 O N N 97 DC N3 N N N 98 DC C4 C N N 99 DC N4 N N N 100 DC C5 C N N 101 DC C6 C N N 102 DC HOP3 H N N 103 DC HOP2 H N N 104 DC "H5'" H N N 105 DC "H5''" H N N 106 DC "H4'" H N N 107 DC "H3'" H N N 108 DC "HO3'" H N N 109 DC "H2'" H N N 110 DC "H2''" H N N 111 DC "H1'" H N N 112 DC H41 H N N 113 DC H42 H N N 114 DC H5 H N N 115 DC H6 H N N 116 DG OP3 O N N 117 DG P P N N 118 DG OP1 O N N 119 DG OP2 O N N 120 DG "O5'" O N N 121 DG "C5'" C N N 122 DG "C4'" C N R 123 DG "O4'" O N N 124 DG "C3'" C N S 125 DG "O3'" O N N 126 DG "C2'" C N N 127 DG "C1'" C N R 128 DG N9 N Y N 129 DG C8 C Y N 130 DG N7 N Y N 131 DG C5 C Y N 132 DG C6 C N N 133 DG O6 O N N 134 DG N1 N N N 135 DG C2 C N N 136 DG N2 N N N 137 DG N3 N N N 138 DG C4 C Y N 139 DG HOP3 H N N 140 DG HOP2 H N N 141 DG "H5'" H N N 142 DG "H5''" H N N 143 DG "H4'" H N N 144 DG "H3'" H N N 145 DG "HO3'" H N N 146 DG "H2'" H N N 147 DG "H2''" H N N 148 DG "H1'" H N N 149 DG H8 H N N 150 DG H1 H N N 151 DG H21 H N N 152 DG H22 H N N 153 DU OP3 O N N 154 DU P P N N 155 DU OP1 O N N 156 DU OP2 O N N 157 DU "O5'" O N N 158 DU "C5'" C N N 159 DU "C4'" C N R 160 DU "O4'" O N N 161 DU "C3'" C N S 162 DU "O3'" O N N 163 DU "C2'" C N N 164 DU "C1'" C N R 165 DU N1 N N N 166 DU C2 C N N 167 DU O2 O N N 168 DU N3 N N N 169 DU C4 C N N 170 DU O4 O N N 171 DU C5 C N N 172 DU C6 C N N 173 DU HOP3 H N N 174 DU HOP2 H N N 175 DU "H5'" H N N 176 DU "H5''" H N N 177 DU "H4'" H N N 178 DU "H3'" H N N 179 DU "HO3'" H N N 180 DU "H2'" H N N 181 DU "H2''" H N N 182 DU "H1'" H N N 183 DU H3 H N N 184 DU H5 H N N 185 DU H6 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DA5 C1 C2 doub Y N 39 DA5 C1 C11 sing Y N 40 DA5 C1 H1 sing N N 41 DA5 C2 C3 sing Y N 42 DA5 C2 H2 sing N N 43 DA5 C3 C4 doub Y N 44 DA5 C3 H3 sing N N 45 DA5 C4 C12 sing Y N 46 DA5 C4 CD1 sing N N 47 DA5 C5 C6 doub Y N 48 DA5 C5 C14 sing Y N 49 DA5 C5 BR sing N N 50 DA5 C6 C7 sing Y N 51 DA5 C6 H6 sing N N 52 DA5 C7 C8 doub Y N 53 DA5 C7 H7 sing N N 54 DA5 C8 C13 sing Y N 55 DA5 C8 H8 sing N N 56 DA5 C9 N9 sing N N 57 DA5 C9 C11 doub Y N 58 DA5 C9 C13 sing Y N 59 DA5 N9 HN91 sing N N 60 DA5 N9 HN92 sing N N 61 DA5 N9 HN93 sing N N 62 DA5 N10 C12 doub Y N 63 DA5 N10 C14 sing Y N 64 DA5 N10 H10 sing N N 65 DA5 C11 C12 sing Y N 66 DA5 C13 C14 doub Y N 67 DA5 CD1 OD1 doub N N 68 DA5 CD1 ND1 sing N N 69 DA5 ND1 CD2 sing N N 70 DA5 ND1 HND1 sing N N 71 DA5 CD2 CD3 sing N N 72 DA5 CD2 HD21 sing N N 73 DA5 CD2 HD22 sing N N 74 DA5 CD3 ND2 sing N N 75 DA5 CD3 HD31 sing N N 76 DA5 CD3 HD32 sing N N 77 DA5 ND2 CD7 sing N N 78 DA5 ND2 CD8 sing N N 79 DA5 CD7 HD71 sing N N 80 DA5 CD7 HD72 sing N N 81 DA5 CD7 HD73 sing N N 82 DA5 CD8 HD81 sing N N 83 DA5 CD8 HD82 sing N N 84 DA5 CD8 HD83 sing N N 85 DC OP3 P sing N N 86 DC OP3 HOP3 sing N N 87 DC P OP1 doub N N 88 DC P OP2 sing N N 89 DC P "O5'" sing N N 90 DC OP2 HOP2 sing N N 91 DC "O5'" "C5'" sing N N 92 DC "C5'" "C4'" sing N N 93 DC "C5'" "H5'" sing N N 94 DC "C5'" "H5''" sing N N 95 DC "C4'" "O4'" sing N N 96 DC "C4'" "C3'" sing N N 97 DC "C4'" "H4'" sing N N 98 DC "O4'" "C1'" sing N N 99 DC "C3'" "O3'" sing N N 100 DC "C3'" "C2'" sing N N 101 DC "C3'" "H3'" sing N N 102 DC "O3'" "HO3'" sing N N 103 DC "C2'" "C1'" sing N N 104 DC "C2'" "H2'" sing N N 105 DC "C2'" "H2''" sing N N 106 DC "C1'" N1 sing N N 107 DC "C1'" "H1'" sing N N 108 DC N1 C2 sing N N 109 DC N1 C6 sing N N 110 DC C2 O2 doub N N 111 DC C2 N3 sing N N 112 DC N3 C4 doub N N 113 DC C4 N4 sing N N 114 DC C4 C5 sing N N 115 DC N4 H41 sing N N 116 DC N4 H42 sing N N 117 DC C5 C6 doub N N 118 DC C5 H5 sing N N 119 DC C6 H6 sing N N 120 DG OP3 P sing N N 121 DG OP3 HOP3 sing N N 122 DG P OP1 doub N N 123 DG P OP2 sing N N 124 DG P "O5'" sing N N 125 DG OP2 HOP2 sing N N 126 DG "O5'" "C5'" sing N N 127 DG "C5'" "C4'" sing N N 128 DG "C5'" "H5'" sing N N 129 DG "C5'" "H5''" sing N N 130 DG "C4'" "O4'" sing N N 131 DG "C4'" "C3'" sing N N 132 DG "C4'" "H4'" sing N N 133 DG "O4'" "C1'" sing N N 134 DG "C3'" "O3'" sing N N 135 DG "C3'" "C2'" sing N N 136 DG "C3'" "H3'" sing N N 137 DG "O3'" "HO3'" sing N N 138 DG "C2'" "C1'" sing N N 139 DG "C2'" "H2'" sing N N 140 DG "C2'" "H2''" sing N N 141 DG "C1'" N9 sing N N 142 DG "C1'" "H1'" sing N N 143 DG N9 C8 sing Y N 144 DG N9 C4 sing Y N 145 DG C8 N7 doub Y N 146 DG C8 H8 sing N N 147 DG N7 C5 sing Y N 148 DG C5 C6 sing N N 149 DG C5 C4 doub Y N 150 DG C6 O6 doub N N 151 DG C6 N1 sing N N 152 DG N1 C2 sing N N 153 DG N1 H1 sing N N 154 DG C2 N2 sing N N 155 DG C2 N3 doub N N 156 DG N2 H21 sing N N 157 DG N2 H22 sing N N 158 DG N3 C4 sing N N 159 DU OP3 P sing N N 160 DU OP3 HOP3 sing N N 161 DU P OP1 doub N N 162 DU P OP2 sing N N 163 DU P "O5'" sing N N 164 DU OP2 HOP2 sing N N 165 DU "O5'" "C5'" sing N N 166 DU "C5'" "C4'" sing N N 167 DU "C5'" "H5'" sing N N 168 DU "C5'" "H5''" sing N N 169 DU "C4'" "O4'" sing N N 170 DU "C4'" "C3'" sing N N 171 DU "C4'" "H4'" sing N N 172 DU "O4'" "C1'" sing N N 173 DU "C3'" "O3'" sing N N 174 DU "C3'" "C2'" sing N N 175 DU "C3'" "H3'" sing N N 176 DU "O3'" "HO3'" sing N N 177 DU "C2'" "C1'" sing N N 178 DU "C2'" "H2'" sing N N 179 DU "C2'" "H2''" sing N N 180 DU "C1'" N1 sing N N 181 DU "C1'" "H1'" sing N N 182 DU N1 C2 sing N N 183 DU N1 C6 sing N N 184 DU C2 O2 doub N N 185 DU C2 N3 sing N N 186 DU N3 C4 sing N N 187 DU N3 H3 sing N N 188 DU C4 O4 doub N N 189 DU C4 C5 sing N N 190 DU C5 C6 doub N N 191 DU C5 H5 sing N N 192 DU C6 H6 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 # _ndb_struct_conf_na.entry_id 367D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 0.166 -0.187 0.198 0.529 -9.206 -2.483 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 -0.290 -0.138 -0.011 -5.944 -3.141 -1.791 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DU 3 1_555 B DA 4 1_555 -0.207 -0.193 -0.031 3.825 -12.364 -2.357 3 A_DU3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DU 3 1_555 0.201 -0.169 -0.071 -3.505 -11.807 -2.626 4 A_DA4:DU9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.295 -0.129 -0.014 6.528 -3.246 -0.801 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 -0.113 -0.187 0.216 0.149 -8.904 -3.176 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.215 0.449 6.821 1.392 1.085 23.291 0.335 0.461 6.835 2.683 -3.442 23.357 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DU 3 1_555 B DA 4 1_555 -0.731 -0.080 3.100 -0.491 0.558 30.756 -0.254 1.287 3.109 1.052 0.925 30.765 2 AA_DG2DU3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DU 3 1_555 B DA 4 1_555 A DA 4 1_555 B DU 3 1_555 -0.007 1.231 3.426 0.386 0.446 43.361 1.621 0.049 3.437 0.604 -0.522 43.365 3 AA_DU3DA4:DU9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DU 3 1_555 A DC 5 1_555 B DG 2 1_555 0.764 -0.078 3.092 0.301 0.758 31.099 -0.283 -1.371 3.096 1.414 -0.561 31.110 4 AA_DA4DC5:DG8DU9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.276 0.473 6.807 -1.807 1.577 23.500 0.058 -0.583 6.824 3.860 4.421 23.620 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 367D _atom_sites.fract_transf_matrix[1][1] 0.033227 _atom_sites.fract_transf_matrix[1][2] 0.019184 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038367 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025286 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_