HEADER VIRAL PROTEIN 28-MAY-26 36BB TITLE STRUCTURE OF BA.4-S-RBD/AB#10-M30W-S94M COMPND MOL_ID: 1; COMPND 2 MOLECULE: AB#10-M30W-S94M HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AB#10-M30W-S94M LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RECEPTOR BINDING DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 19 ORGANISM_TAXID: 2697049; SOURCE 20 STRAIN: OMICRON BA.4; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.DU,J.PALLESEN REVDAT 1 15-JUL-26 36BB 0 JRNL AUTH J.PALLESEN,J.DU,Y.WU,S.GHOSH,K.BAYRUNS,R.SADEESH,D.WEINER JRNL TITL STRUCTURE-GUIDED DESIGN OF THERAPEUTIC ANTIBODIES TARGETING JRNL TITL 2 SARS-COV-2 OMICRON VARIANTS. JRNL REF RES SQ 2026 JRNL REFN ESSN 2693-5015 JRNL PMID 42396495 JRNL DOI 10.21203/RS.3.RS-9917568/V1 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 536554 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 36BB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-26. REMARK 100 THE DEPOSITION ID IS D_1000308426. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF SARS-COV-2 OMICRON REMARK 245 BA.4 SPIKE PROTEIN AND AB#10- REMARK 245 M30W-S94M IGG REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4930.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H -18 REMARK 465 ASP H -17 REMARK 465 TRP H -16 REMARK 465 THR H -15 REMARK 465 TRP H -14 REMARK 465 ARG H -13 REMARK 465 ILE H -12 REMARK 465 LEU H -11 REMARK 465 PHE H -10 REMARK 465 LEU H -9 REMARK 465 VAL H -8 REMARK 465 ALA H -7 REMARK 465 ALA H -6 REMARK 465 ALA H -5 REMARK 465 THR H -4 REMARK 465 GLY H -3 REMARK 465 THR H -2 REMARK 465 HIS H -1 REMARK 465 ALA H 0 REMARK 465 SER H 113 REMARK 465 ALA H 114 REMARK 465 SER H 115 REMARK 465 THR H 116 REMARK 465 LYS H 117 REMARK 465 GLY H 118 REMARK 465 PRO H 119 REMARK 465 SER H 120 REMARK 465 VAL H 121 REMARK 465 PHE H 122 REMARK 465 PRO H 123 REMARK 465 LEU H 124 REMARK 465 ALA H 125 REMARK 465 PRO H 126 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 THR H 135 REMARK 465 ALA H 136 REMARK 465 ALA H 137 REMARK 465 LEU H 138 REMARK 465 GLY H 139 REMARK 465 CYS H 140 REMARK 465 LEU H 141 REMARK 465 VAL H 142 REMARK 465 LYS H 143 REMARK 465 ASP H 144 REMARK 465 TYR H 145 REMARK 465 PHE H 146 REMARK 465 PRO H 147 REMARK 465 GLU H 148 REMARK 465 PRO H 149 REMARK 465 VAL H 150 REMARK 465 THR H 151 REMARK 465 VAL H 152 REMARK 465 SER H 153 REMARK 465 TRP H 154 REMARK 465 ASN H 155 REMARK 465 SER H 156 REMARK 465 GLY H 157 REMARK 465 ALA H 158 REMARK 465 LEU H 159 REMARK 465 THR H 160 REMARK 465 SER H 161 REMARK 465 GLY H 162 REMARK 465 VAL H 163 REMARK 465 HIS H 164 REMARK 465 THR H 165 REMARK 465 PHE H 166 REMARK 465 PRO H 167 REMARK 465 ALA H 168 REMARK 465 VAL H 169 REMARK 465 LEU H 170 REMARK 465 GLN H 171 REMARK 465 SER H 172 REMARK 465 SER H 173 REMARK 465 GLY H 174 REMARK 465 LEU H 175 REMARK 465 TYR H 176 REMARK 465 SER H 177 REMARK 465 LEU H 178 REMARK 465 SER H 179 REMARK 465 SER H 180 REMARK 465 VAL H 181 REMARK 465 VAL H 182 REMARK 465 THR H 183 REMARK 465 VAL H 184 REMARK 465 PRO H 185 REMARK 465 SER H 186 REMARK 465 SER H 187 REMARK 465 SER H 188 REMARK 465 LEU H 189 REMARK 465 GLY H 190 REMARK 465 THR H 191 REMARK 465 GLN H 192 REMARK 465 THR H 193 REMARK 465 TYR H 194 REMARK 465 ILE H 195 REMARK 465 CYS H 196 REMARK 465 ASN H 197 REMARK 465 VAL H 198 REMARK 465 ASN H 199 REMARK 465 HIS H 200 REMARK 465 LYS H 201 REMARK 465 PRO H 202 REMARK 465 SER H 203 REMARK 465 ASN H 204 REMARK 465 THR H 205 REMARK 465 LYS H 206 REMARK 465 VAL H 207 REMARK 465 ASP H 208 REMARK 465 LYS H 209 REMARK 465 LYS H 210 REMARK 465 VAL H 211 REMARK 465 GLU H 212 REMARK 465 PRO H 213 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR H 221 REMARK 465 CYS H 222 REMARK 465 PRO H 223 REMARK 465 PRO H 224 REMARK 465 CYS H 225 REMARK 465 PRO H 226 REMARK 465 ALA H 227 REMARK 465 PRO H 228 REMARK 465 GLU H 229 REMARK 465 LEU H 230 REMARK 465 LEU H 231 REMARK 465 GLY H 232 REMARK 465 GLY H 233 REMARK 465 PRO H 234 REMARK 465 SER H 235 REMARK 465 VAL H 236 REMARK 465 PHE H 237 REMARK 465 LEU H 238 REMARK 465 PHE H 239 REMARK 465 PRO H 240 REMARK 465 PRO H 241 REMARK 465 LYS H 242 REMARK 465 PRO H 243 REMARK 465 LYS H 244 REMARK 465 ASP H 245 REMARK 465 THR H 246 REMARK 465 LEU H 247 REMARK 465 MET H 248 REMARK 465 ILE H 249 REMARK 465 SER H 250 REMARK 465 ARG H 251 REMARK 465 THR H 252 REMARK 465 PRO H 253 REMARK 465 GLU H 254 REMARK 465 VAL H 255 REMARK 465 THR H 256 REMARK 465 CYS H 257 REMARK 465 VAL H 258 REMARK 465 VAL H 259 REMARK 465 VAL H 260 REMARK 465 ASP H 261 REMARK 465 VAL H 262 REMARK 465 SER H 263 REMARK 465 HIS H 264 REMARK 465 GLU H 265 REMARK 465 ASP H 266 REMARK 465 PRO H 267 REMARK 465 GLU H 268 REMARK 465 VAL H 269 REMARK 465 LYS H 270 REMARK 465 PHE H 271 REMARK 465 ASN H 272 REMARK 465 TRP H 273 REMARK 465 TYR H 274 REMARK 465 VAL H 275 REMARK 465 ASP H 276 REMARK 465 GLY H 277 REMARK 465 VAL H 278 REMARK 465 GLU H 279 REMARK 465 VAL H 280 REMARK 465 HIS H 281 REMARK 465 ASN H 282 REMARK 465 ALA H 283 REMARK 465 LYS H 284 REMARK 465 THR H 285 REMARK 465 LYS H 286 REMARK 465 PRO H 287 REMARK 465 ARG H 288 REMARK 465 GLU H 289 REMARK 465 GLU H 290 REMARK 465 GLN H 291 REMARK 465 TYR H 292 REMARK 465 ASN H 293 REMARK 465 SER H 294 REMARK 465 THR H 295 REMARK 465 TYR H 296 REMARK 465 ARG H 297 REMARK 465 VAL H 298 REMARK 465 VAL H 299 REMARK 465 SER H 300 REMARK 465 VAL H 301 REMARK 465 LEU H 302 REMARK 465 THR H 303 REMARK 465 VAL H 304 REMARK 465 LEU H 305 REMARK 465 HIS H 306 REMARK 465 GLN H 307 REMARK 465 ASP H 308 REMARK 465 TRP H 309 REMARK 465 LEU H 310 REMARK 465 ASN H 311 REMARK 465 GLY H 312 REMARK 465 LYS H 313 REMARK 465 GLU H 314 REMARK 465 TYR H 315 REMARK 465 LYS H 316 REMARK 465 CYS H 317 REMARK 465 LYS H 318 REMARK 465 VAL H 319 REMARK 465 SER H 320 REMARK 465 ASN H 321 REMARK 465 LYS H 322 REMARK 465 ALA H 323 REMARK 465 LEU H 324 REMARK 465 PRO H 325 REMARK 465 ALA H 326 REMARK 465 PRO H 327 REMARK 465 ILE H 328 REMARK 465 GLU H 329 REMARK 465 LYS H 330 REMARK 465 THR H 331 REMARK 465 ILE H 332 REMARK 465 SER H 333 REMARK 465 LYS H 334 REMARK 465 ALA H 335 REMARK 465 LYS H 336 REMARK 465 GLY H 337 REMARK 465 GLN H 338 REMARK 465 PRO H 339 REMARK 465 ARG H 340 REMARK 465 GLU H 341 REMARK 465 PRO H 342 REMARK 465 GLN H 343 REMARK 465 VAL H 344 REMARK 465 TYR H 345 REMARK 465 THR H 346 REMARK 465 LEU H 347 REMARK 465 PRO H 348 REMARK 465 PRO H 349 REMARK 465 SER H 350 REMARK 465 ARG H 351 REMARK 465 ASP H 352 REMARK 465 GLU H 353 REMARK 465 LEU H 354 REMARK 465 THR H 355 REMARK 465 LYS H 356 REMARK 465 ASN H 357 REMARK 465 GLN H 358 REMARK 465 VAL H 359 REMARK 465 SER H 360 REMARK 465 LEU H 361 REMARK 465 THR H 362 REMARK 465 CYS H 363 REMARK 465 LEU H 364 REMARK 465 VAL H 365 REMARK 465 LYS H 366 REMARK 465 GLY H 367 REMARK 465 PHE H 368 REMARK 465 TYR H 369 REMARK 465 PRO H 370 REMARK 465 SER H 371 REMARK 465 ASP H 372 REMARK 465 ILE H 373 REMARK 465 ALA H 374 REMARK 465 VAL H 375 REMARK 465 GLU H 376 REMARK 465 TRP H 377 REMARK 465 GLU H 378 REMARK 465 SER H 379 REMARK 465 ASN H 380 REMARK 465 GLY H 381 REMARK 465 GLN H 382 REMARK 465 PRO H 383 REMARK 465 GLU H 384 REMARK 465 ASN H 385 REMARK 465 ASN H 386 REMARK 465 TYR H 387 REMARK 465 LYS H 388 REMARK 465 THR H 389 REMARK 465 THR H 390 REMARK 465 PRO H 391 REMARK 465 PRO H 392 REMARK 465 VAL H 393 REMARK 465 LEU H 394 REMARK 465 ASP H 395 REMARK 465 SER H 396 REMARK 465 ASP H 397 REMARK 465 GLY H 398 REMARK 465 SER H 399 REMARK 465 PHE H 400 REMARK 465 PHE H 401 REMARK 465 LEU H 402 REMARK 465 TYR H 403 REMARK 465 SER H 404 REMARK 465 LYS H 405 REMARK 465 LEU H 406 REMARK 465 THR H 407 REMARK 465 VAL H 408 REMARK 465 ASP H 409 REMARK 465 LYS H 410 REMARK 465 SER H 411 REMARK 465 ARG H 412 REMARK 465 TRP H 413 REMARK 465 GLN H 414 REMARK 465 GLN H 415 REMARK 465 GLY H 416 REMARK 465 ASN H 417 REMARK 465 VAL H 418 REMARK 465 PHE H 419 REMARK 465 SER H 420 REMARK 465 CYS H 421 REMARK 465 SER H 422 REMARK 465 VAL H 423 REMARK 465 MET H 424 REMARK 465 HIS H 425 REMARK 465 GLU H 426 REMARK 465 ALA H 427 REMARK 465 LEU H 428 REMARK 465 HIS H 429 REMARK 465 ASN H 430 REMARK 465 HIS H 431 REMARK 465 TYR H 432 REMARK 465 THR H 433 REMARK 465 GLN H 434 REMARK 465 LYS H 435 REMARK 465 SER H 436 REMARK 465 LEU H 437 REMARK 465 SER H 438 REMARK 465 LEU H 439 REMARK 465 SER H 440 REMARK 465 PRO H 441 REMARK 465 GLY H 442 REMARK 465 LYS H 443 REMARK 465 MET L -19 REMARK 465 VAL L -18 REMARK 465 LEU L -17 REMARK 465 GLN L -16 REMARK 465 THR L -15 REMARK 465 GLN L -14 REMARK 465 VAL L -13 REMARK 465 PHE L -12 REMARK 465 ILE L -11 REMARK 465 SER L -10 REMARK 465 LEU L -9 REMARK 465 LEU L -8 REMARK 465 LEU L -7 REMARK 465 TRP L -6 REMARK 465 ILE L -5 REMARK 465 SER L -4 REMARK 465 GLY L -3 REMARK 465 ALA L -2 REMARK 465 TYR L -1 REMARK 465 GLY L 0 REMARK 465 GLU L 1 REMARK 465 ARG L 108 REMARK 465 THR L 109 REMARK 465 VAL L 110 REMARK 465 ALA L 111 REMARK 465 ALA L 112 REMARK 465 PRO L 113 REMARK 465 SER L 114 REMARK 465 VAL L 115 REMARK 465 PHE L 116 REMARK 465 ILE L 117 REMARK 465 PHE L 118 REMARK 465 PRO L 119 REMARK 465 PRO L 120 REMARK 465 SER L 121 REMARK 465 ASP L 122 REMARK 465 GLU L 123 REMARK 465 GLN L 124 REMARK 465 LEU L 125 REMARK 465 LYS L 126 REMARK 465 SER L 127 REMARK 465 GLY L 128 REMARK 465 THR L 129 REMARK 465 ALA L 130 REMARK 465 SER L 131 REMARK 465 VAL L 132 REMARK 465 VAL L 133 REMARK 465 CYS L 134 REMARK 465 LEU L 135 REMARK 465 LEU L 136 REMARK 465 ASN L 137 REMARK 465 ASN L 138 REMARK 465 PHE L 139 REMARK 465 TYR L 140 REMARK 465 PRO L 141 REMARK 465 ARG L 142 REMARK 465 GLU L 143 REMARK 465 ALA L 144 REMARK 465 LYS L 145 REMARK 465 VAL L 146 REMARK 465 GLN L 147 REMARK 465 TRP L 148 REMARK 465 LYS L 149 REMARK 465 VAL L 150 REMARK 465 ASP L 151 REMARK 465 ASN L 152 REMARK 465 ALA L 153 REMARK 465 LEU L 154 REMARK 465 GLN L 155 REMARK 465 SER L 156 REMARK 465 GLY L 157 REMARK 465 ASN L 158 REMARK 465 SER L 159 REMARK 465 GLN L 160 REMARK 465 GLU L 161 REMARK 465 SER L 162 REMARK 465 VAL L 163 REMARK 465 THR L 164 REMARK 465 GLU L 165 REMARK 465 GLN L 166 REMARK 465 ASP L 167 REMARK 465 SER L 168 REMARK 465 LYS L 169 REMARK 465 ASP L 170 REMARK 465 SER L 171 REMARK 465 THR L 172 REMARK 465 TYR L 173 REMARK 465 SER L 174 REMARK 465 LEU L 175 REMARK 465 SER L 176 REMARK 465 ASN L 177 REMARK 465 THR L 178 REMARK 465 LEU L 179 REMARK 465 THR L 180 REMARK 465 LEU L 181 REMARK 465 SER L 182 REMARK 465 LYS L 183 REMARK 465 ALA L 184 REMARK 465 ASP L 185 REMARK 465 TYR L 186 REMARK 465 GLU L 187 REMARK 465 LYS L 188 REMARK 465 HIS L 189 REMARK 465 LYS L 190 REMARK 465 VAL L 191 REMARK 465 TYR L 192 REMARK 465 ALA L 193 REMARK 465 CYS L 194 REMARK 465 GLU L 195 REMARK 465 VAL L 196 REMARK 465 THR L 197 REMARK 465 HIS L 198 REMARK 465 GLN L 199 REMARK 465 GLY L 200 REMARK 465 LEU L 201 REMARK 465 SER L 202 REMARK 465 SER L 203 REMARK 465 PRO L 204 REMARK 465 VAL L 205 REMARK 465 THR L 206 REMARK 465 LYS L 207 REMARK 465 SER L 208 REMARK 465 PHE L 209 REMARK 465 ASN L 210 REMARK 465 ARG L 211 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 LEU A 518 REMARK 465 HIS A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 TYR L 87 O GLN L 100 1.91 REMARK 500 OH TYR H 91 NE2 GLN L 38 2.03 REMARK 500 O GLN A 506 CE1 TYR A 508 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 507 CD PRO A 507 N -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 99 -139.95 52.20 REMARK 500 GLN L 42 -135.24 46.72 REMARK 500 TYR L 50 -168.43 59.73 REMARK 500 LEU L 78 39.57 75.52 REMARK 500 ARG L 95 76.25 63.44 REMARK 500 SER A 349 -174.56 73.73 REMARK 500 PHE A 400 -63.10 -123.32 REMARK 500 ASN A 422 -159.98 -124.18 REMARK 500 ASN A 448 81.80 -156.27 REMARK 500 LYS A 458 -118.51 58.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 497 ARG A 498 125.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 497 19.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-77348 RELATED DB: EMDB REMARK 900 STRUCTURE OF BA.4-S-RBD/AB#10-M30W-S94M DBREF 36BB H -18 443 PDB 36BB 36BB -18 443 DBREF 36BB L -19 214 PDB 36BB 36BB -19 214 DBREF 36BB A 330 526 PDB 36BB 36BB 330 526 SEQRES 1 H 472 MET ASP TRP THR TRP ARG ILE LEU PHE LEU VAL ALA ALA SEQRES 2 H 472 ALA THR GLY THR HIS ALA GLN MET GLN LEU VAL GLN SER SEQRES 3 H 472 GLY PRO GLU VAL LYS LYS PRO GLY THR SER VAL LYS VAL SEQRES 4 H 472 SER CYS LYS ALA SER GLY PHE THR PHE TRP SER SER ALA SEQRES 5 H 472 VAL GLN TRP VAL ARG GLN ALA ARG GLY GLN ARG LEU GLU SEQRES 6 H 472 TRP ILE GLY TRP ILE VAL ILE ALA SER GLY GLU THR ASN SEQRES 7 H 472 TYR ALA GLN LYS PHE GLN GLU ARG VAL THR ILE THR ARG SEQRES 8 H 472 ASP MET SER THR SER THR ALA TYR MET GLU LEU SER SER SEQRES 9 H 472 LEU ARG SER GLU ASP THR ALA VAL TYR TYR CYS ALA ALA SEQRES 10 H 472 PRO TYR CYS SER SER ARG GLU CYS ASN ASN GLY PHE ASP SEQRES 11 H 472 ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SER ALA SEQRES 12 H 472 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 13 H 472 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 14 H 472 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 15 H 472 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 16 H 472 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 17 H 472 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 18 H 472 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 19 H 472 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 20 H 472 THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU SEQRES 21 H 472 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 22 H 472 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 23 H 472 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 24 H 472 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 25 H 472 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 26 H 472 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 27 H 472 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 28 H 472 ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA SEQRES 29 H 472 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 30 H 472 PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU SEQRES 31 H 472 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 32 H 472 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 33 H 472 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 34 H 472 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 35 H 472 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 36 H 472 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 37 H 472 SER PRO GLY LYS SEQRES 1 L 236 MET VAL LEU GLN THR GLN VAL PHE ILE SER LEU LEU LEU SEQRES 2 L 236 TRP ILE SER GLY ALA TYR GLY GLU ILE VAL LEU THR GLN SEQRES 3 L 236 SER PRO GLY THR LEU SER LEU SER PRO GLY GLU ARG ALA SEQRES 4 L 236 THR LEU SER CYS ARG ALA SER GLN SER VAL SER SER MET SEQRES 5 L 236 ASP LEU ALA TRP TYR GLN GLN LYS PRO GLY GLN ALA PRO SEQRES 6 L 236 ARG LEU LEU ILE TYR TYR ALA SER SER ARG ALA THR GLY SEQRES 7 L 236 ILE PRO ASP ARG PHE SER GLY SER GLY SER GLY THR ASP SEQRES 8 L 236 PHE THR LEU THR ILE SER ARG LEU GLU PRO GLU ASP PHE SEQRES 9 L 236 ALA VAL TYR TYR CYS GLN HIS TYR GLY GLY MET ARG GLY SEQRES 10 L 236 TRP THR PHE GLY GLN GLY THR LYS VAL GLU ILE LYS ARG SEQRES 11 L 236 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 12 L 236 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 13 L 236 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 14 L 236 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 15 L 236 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 16 L 236 SER LEU SER ASN THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 17 L 236 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 18 L 236 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 19 L 236 GLU CYS SEQRES 1 A 197 PRO ASN ILE THR ASN LEU CYS PRO PHE ASP GLU VAL PHE SEQRES 2 A 197 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 A 197 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 A 197 TYR ASN PHE ALA PRO PHE PHE ALA PHE LYS CYS TYR GLY SEQRES 5 A 197 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 A 197 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SEQRES 7 A 197 SER GLN ILE ALA PRO GLY GLN THR GLY ASN ILE ALA ASP SEQRES 8 A 197 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 A 197 ILE ALA TRP ASN SER ASN LYS LEU ASP GLY LYS VAL SER SEQRES 10 A 197 GLY ASN TYR ASN TYR ARG TYR ARG LEU PHE ARG LYS SER SEQRES 11 A 197 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 A 197 TYR GLN ALA GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY SEQRES 13 A 197 VAL ASN CYS TYR PHE PRO LEU GLN SER TYR SER PHE ARG SEQRES 14 A 197 PRO THR TYR GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL SEQRES 15 A 197 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 A 197 CYS GLY HELIX 1 AA1 ALA H 60 GLU H 65 1 6 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 PRO A 337 VAL A 341 5 5 HELIX 4 AA4 ASP A 364 PHE A 371 5 8 HELIX 5 AA5 GLY A 416 TYR A 421 1 6 HELIX 6 AA6 ARG A 498 GLY A 502 5 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 VAL H 89 ALA H 93 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N GLN H 35 O ALA H 93 SHEET 5 AA2 6 GLU H 46 VAL H 52 -1 O ILE H 51 N VAL H 34 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 2 LEU L 11 SER L 12 0 SHEET 2 AA3 2 VAL L 104 GLU L 105 1 O GLU L 105 N LEU L 11 SHEET 1 AA4 3 LEU L 33 TRP L 35 0 SHEET 2 AA4 3 CYS L 88 HIS L 90 -1 O GLN L 89 N ALA L 34 SHEET 3 AA4 3 THR L 97 PHE L 98 -1 O THR L 97 N HIS L 90 SHEET 1 AA5 2 ASN A 334 LEU A 335 0 SHEET 2 AA5 2 CYS A 361 VAL A 362 1 O VAL A 362 N ASN A 334 SHEET 1 AA6 3 VAL A 401 ILE A 402 0 SHEET 2 AA6 3 TYR A 508 SER A 514 -1 O TYR A 508 N ILE A 402 SHEET 3 AA6 3 GLY A 431 ASN A 437 -1 N TRP A 436 O ARG A 509 SHEET 1 AA7 2 TYR A 453 ARG A 454 0 SHEET 2 AA7 2 LEU A 492 GLN A 493 -1 O GLN A 493 N TYR A 453 SHEET 1 AA8 2 TYR A 473 GLN A 474 0 SHEET 2 AA8 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 97 CYS H 100B 1555 1555 2.21 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.15 SSBOND 4 CYS A 336 CYS A 361 1555 1555 2.06 SSBOND 5 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 6 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 7 CYS A 480 CYS A 488 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 160 762 CONECT 762 160 CONECT 797 835 CONECT 835 797 CONECT 1110 1625 CONECT 1625 1110 CONECT 1815 2026 CONECT 2026 1815 CONECT 2175 2582 CONECT 2265 3289 CONECT 2582 2175 CONECT 2981 3030 CONECT 3030 2981 CONECT 3289 2265 MASTER 676 0 0 6 24 0 0 6 3292 3 14 72 END