HEADER DNA BINDING PROTEIN 24-JUN-26 36OW TITLE ISORETICULAR CO-CRYSTAL 1 WITH SYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE CGCGGGATAA WITH PHOSPHOROTHIOATE TITLE 3 MODIFICATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*AP*TP*AP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP COMPND 4 *T)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP COMPND 10 *A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 17 PROTEIN REPE54; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA BINDING PROTEIN, COCRYSTAL, PHOSPHOROTHIOATE EXPDTA X-RAY DIFFRACTION AUTHOR C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,C.D.SNOW REVDAT 1 19-AUG-26 36OW 0 JRNL AUTH C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,A.PLATT,C.D.SNOW JRNL TITL CRYSTALLINE BIOMATERIALS FOR SITE-SPECIFIC ORGANIZATION OF JRNL TITL 2 MODIFIED DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0200 - 6.2700 0.99 1331 148 0.2310 0.2667 REMARK 3 2 6.2700 - 4.9800 1.00 1273 146 0.2835 0.3069 REMARK 3 3 4.9800 - 4.3500 0.99 1266 138 0.2654 0.2944 REMARK 3 4 4.3500 - 3.9500 0.99 1243 131 0.2746 0.3237 REMARK 3 5 3.9500 - 3.6700 1.00 1227 135 0.3065 0.3324 REMARK 3 6 3.6700 - 3.4500 1.00 1250 142 0.3191 0.3429 REMARK 3 7 3.4500 - 3.2800 1.00 1252 135 0.3314 0.3892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.513 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.813 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3100 REMARK 3 ANGLE : 0.740 4448 REMARK 3 CHIRALITY : 0.047 490 REMARK 3 PLANARITY : 0.004 359 REMARK 3 DIHEDRAL : 23.538 1244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 36OW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1000309188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11160 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.140 REMARK 200 RESOLUTION RANGE LOW (A) : 46.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM MAGNESIUM ACETATE, 1.8 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.60750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.31500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.87900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.60750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.31500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.87900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.60750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.31500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.87900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.60750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.31500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.87900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 SER C 49 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 ILE C 140 REMARK 465 GLY C 141 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 VAL C 19 CG1 CG2 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 ASP C 23 CG OD1 OD2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 GLN C 45 CG CD OE1 NE2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 ILE C 59 CG1 CG2 CD1 REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 SER C 75 OG REMARK 470 LYS C 87 CD CE NZ REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 HIS C 130 CG ND1 CD2 CE1 NE2 REMARK 470 PHE C 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 145 CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 SER C 152 OG REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ASP C 176 CG OD1 OD2 REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 SER C 241 OG REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 SC A 19 C3' - O3' - P ANGL. DEV. = -8.9 DEGREES REMARK 500 AS A 20 O3' - P - O5' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG B 20 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 GS B 42 C3' - O3' - P ANGL. DEV. = 16.8 DEGREES REMARK 500 GS B 43 O3' - P - OP1 ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 176 6.09 -69.34 REMARK 500 PHE C 208 -57.19 -138.56 REMARK 500 PRO C 221 48.68 -84.29 REMARK 500 LYS C 231 76.66 -118.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 81.4 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36NQ RELATED DB: PDB DBREF 36OW A -4 26 PDB 36OW 36OW -4 26 DBREF 36OW B 19 49 PDB 36OW 36OW 19 49 DBREF 36OW C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 36OW MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 36OW ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 36OW GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 36OW SER C -8 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 36OW HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 36OW GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 36OW SER C 0 UNP P03856 EXPRESSION TAG SEQADV 36OW PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DG DA DT DA DA DC DC DT DG DT DG DA DC SEQRES 2 A 31 DA DA DA DT DT DG DC DC DC DT SC AS GS SEQRES 3 A 31 DC DG DC DG DG SEQRES 1 B 31 DC DG DC DG DC DT DG DA DG DG DG DC DA SEQRES 2 B 31 DA DT DT DT DG DT DC DA DC DA GS GS PST SEQRES 3 B 31 DT DA DT DC DC SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET SC A 19 19 HET AS A 20 21 HET GS A 21 22 HET GS B 42 22 HET GS B 43 22 HET PST B 44 20 HET MG C 301 1 HETNAM SC 2'-DEOXYCYTIDINE-5'-THIO-MONOPHOSPHATE HETNAM AS 2'-DEOXYADENOSINE-5'-THIO-MONOPHOSPHATE HETNAM GS 2'-DEOXYGUANOSINE-5'-THIO-MONOPHOSPHATE HETNAM PST THYMIDINE-5'-THIOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 SC C9 H14 N3 O6 P S FORMUL 1 AS C10 H14 N5 O5 P S FORMUL 1 GS 3(C10 H14 N5 O6 P S) FORMUL 2 PST C10 H15 N2 O7 P S FORMUL 4 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 PRO C 133 PHE C 139 5 7 HELIX 6 AA6 LEU C 151 LYS C 155 1 5 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 SER C 123 -1 N ILE C 116 O HIS C 130 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ARG C 223 O ARG C 243 LINK O3' DT A 18 P SC A 19 1555 1555 1.61 LINK O3' SC A 19 P AS A 20 1555 1555 1.57 LINK O3' AS A 20 P GS A 21 1555 1555 1.55 LINK O3' GS A 21 P DC A 22 1555 1555 1.61 LINK O3' DA B 41 P GS B 42 1555 1555 1.57 LINK O3' GS B 42 P GS B 43 1555 1555 1.57 LINK O3' GS B 43 P PST B 44 1555 1555 1.56 LINK O3' PST B 44 P DT B 45 1555 1555 1.61 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.33 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.23 CRYST1 73.215 128.630 131.758 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007590 0.00000 CONECT 458 486 CONECT 470 471 475 478 CONECT 471 470 472 476 CONECT 472 471 473 CONECT 473 472 474 477 CONECT 474 473 475 CONECT 475 470 474 CONECT 476 471 CONECT 477 473 CONECT 478 470 479 482 CONECT 479 478 480 CONECT 480 479 481 483 CONECT 481 480 482 484 CONECT 482 478 481 CONECT 483 480 489 CONECT 484 481 485 CONECT 485 484 486 CONECT 486 458 485 487 488 CONECT 487 486 CONECT 488 486 CONECT 489 483 490 491 492 CONECT 490 489 CONECT 491 489 CONECT 492 489 493 CONECT 493 492 494 CONECT 494 493 495 496 CONECT 495 494 499 CONECT 496 494 497 498 CONECT 497 496 510 CONECT 498 496 499 CONECT 499 495 498 500 CONECT 500 499 501 509 CONECT 501 500 502 CONECT 502 501 503 CONECT 503 502 504 509 CONECT 504 503 505 506 CONECT 505 504 CONECT 506 504 507 CONECT 507 506 508 CONECT 508 507 509 CONECT 509 500 503 508 CONECT 510 497 511 512 513 CONECT 511 510 CONECT 512 510 CONECT 513 510 514 CONECT 514 513 515 CONECT 515 514 516 517 CONECT 516 515 520 CONECT 517 515 518 519 CONECT 518 517 532 CONECT 519 517 520 CONECT 520 516 519 521 CONECT 521 520 522 531 CONECT 522 521 523 CONECT 523 522 524 CONECT 524 523 525 531 CONECT 525 524 526 527 CONECT 526 525 CONECT 527 525 528 CONECT 528 527 529 530 CONECT 529 528 CONECT 530 528 531 CONECT 531 521 524 530 CONECT 532 518 CONECT 1097 1110 CONECT 1110 1097 1111 1112 1113 CONECT 1111 1110 CONECT 1112 1110 CONECT 1113 1110 1114 CONECT 1114 1113 1115 CONECT 1115 1114 1116 1117 CONECT 1116 1115 1120 CONECT 1117 1115 1118 1119 CONECT 1118 1117 1132 CONECT 1119 1117 1120 CONECT 1120 1116 1119 1121 CONECT 1121 1120 1122 1131 CONECT 1122 1121 1123 CONECT 1123 1122 1124 CONECT 1124 1123 1125 1131 CONECT 1125 1124 1126 1127 CONECT 1126 1125 CONECT 1127 1125 1128 CONECT 1128 1127 1129 1130 CONECT 1129 1128 CONECT 1130 1128 1131 CONECT 1131 1121 1124 1130 CONECT 1132 1118 1133 1134 1135 CONECT 1133 1132 CONECT 1134 1132 CONECT 1135 1132 1136 CONECT 1136 1135 1137 CONECT 1137 1136 1138 1139 CONECT 1138 1137 1142 CONECT 1139 1137 1140 1141 CONECT 1140 1139 1154 CONECT 1141 1139 1142 CONECT 1142 1138 1141 1143 CONECT 1143 1142 1144 1153 CONECT 1144 1143 1145 CONECT 1145 1144 1146 CONECT 1146 1145 1147 1153 CONECT 1147 1146 1148 1149 CONECT 1148 1147 CONECT 1149 1147 1150 CONECT 1150 1149 1151 1152 CONECT 1151 1150 CONECT 1152 1150 1153 CONECT 1153 1143 1146 1152 CONECT 1154 1140 1155 1156 1157 CONECT 1155 1154 CONECT 1156 1154 CONECT 1157 1154 1158 CONECT 1158 1157 1159 CONECT 1159 1158 1160 1161 CONECT 1160 1159 1164 CONECT 1161 1159 1162 1163 CONECT 1162 1161 1174 CONECT 1163 1161 1164 CONECT 1164 1160 1163 1165 CONECT 1165 1164 1166 1173 CONECT 1166 1165 1167 1168 CONECT 1167 1166 CONECT 1168 1166 1169 CONECT 1169 1168 1170 1171 CONECT 1170 1169 CONECT 1171 1169 1172 1173 CONECT 1172 1171 CONECT 1173 1165 1171 CONECT 1174 1162 CONECT 1681 2911 CONECT 1708 2911 CONECT 2911 1681 1708 MASTER 371 0 7 11 10 0 0 6 2908 3 133 27 END