HEADER TRANSFERASE 03-JUL-26 36WK TITLE MEVALONATE KINASE FROM SACCHAROMYCES CEREVISIAE WITH DIMETHYLALLYL TITLE 2 PYROPHOSPHATE (DMAPP) BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MK,MVK,ERGOSTEROL BIOSYNTHESIS PROTEIN 12,REGULATION OF COMPND 5 AUTONOMOUS REPLICATION PROTEIN 1; COMPND 6 EC: 2.7.1.36; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ERG12, RAR1, YMR208W, YM8261.02; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METABOLIC ENZYME, MEVALONATE PATHWAY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.S.D'EMILIA,E.R.RAGWAN,V.CHANG,Y.KUNG REVDAT 1 30-SEP-26 36WK 0 JRNL AUTH R.L.S.D'EMILIA,K.A.MCCASKEY,E.R.RAGWAN,J.H.KIM,V.CHANG, JRNL AUTH 2 M.M.TANG,Y.KUNG JRNL TITL STRUCTURAL BASIS OF MEVALONATE PATHWAY REGULATION BY JRNL TITL 2 FEEDBACK INHIBITION OF MEVALONATE KINASE. JRNL REF J.BIOL.CHEM. 13566 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42754161 JRNL DOI 10.1016/J.JBC.2026.113566 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 69902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4300 - 5.6400 0.97 2896 156 0.1792 0.2111 REMARK 3 2 5.6400 - 4.4800 0.99 2780 146 0.1570 0.1740 REMARK 3 3 4.4800 - 3.9100 0.99 2748 141 0.1442 0.1557 REMARK 3 4 3.9100 - 3.5500 0.99 2732 144 0.1570 0.1855 REMARK 3 5 3.5500 - 3.3000 0.94 2570 138 0.1671 0.1542 REMARK 3 6 3.3000 - 3.1000 0.99 2649 140 0.1795 0.1778 REMARK 3 7 3.1000 - 2.9500 1.00 2719 143 0.1777 0.1776 REMARK 3 8 2.9500 - 2.8200 0.99 2681 142 0.1777 0.2214 REMARK 3 9 2.8200 - 2.7100 0.99 2677 140 0.1948 0.2108 REMARK 3 10 2.7100 - 2.6200 0.99 2659 139 0.2023 0.2525 REMARK 3 11 2.6200 - 2.5400 0.99 2678 141 0.1992 0.2500 REMARK 3 12 2.5400 - 2.4600 1.00 2654 139 0.2112 0.2362 REMARK 3 13 2.4600 - 2.4000 0.99 2679 141 0.2166 0.2413 REMARK 3 14 2.4000 - 2.3400 0.94 2513 131 0.2169 0.2431 REMARK 3 15 2.3400 - 2.2900 0.98 2632 139 0.2228 0.2570 REMARK 3 16 2.2900 - 2.2400 0.99 2635 140 0.2235 0.2245 REMARK 3 17 2.2400 - 2.1900 0.99 2602 135 0.2231 0.2831 REMARK 3 18 2.1900 - 2.1500 0.99 2664 139 0.2461 0.2572 REMARK 3 19 2.1500 - 2.1100 0.99 2642 140 0.2616 0.2749 REMARK 3 20 2.1100 - 2.0800 0.99 2611 138 0.2791 0.2899 REMARK 3 21 2.0800 - 2.0400 0.99 2632 137 0.3062 0.3410 REMARK 3 22 2.0400 - 2.0100 0.99 2636 141 0.3232 0.3758 REMARK 3 23 2.0100 - 1.9800 0.99 2604 137 0.3436 0.3705 REMARK 3 24 1.9800 - 1.9600 0.98 2632 140 0.3643 0.3650 REMARK 3 25 1.9600 - 1.9300 0.94 2483 127 0.4087 0.4367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3541 REMARK 3 ANGLE : 0.890 4811 REMARK 3 CHIRALITY : 0.050 563 REMARK 3 PLANARITY : 0.006 620 REMARK 3 DIHEDRAL : 13.852 1262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -8 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4820 -22.4080 33.1091 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.4251 REMARK 3 T33: 0.3273 T12: 0.0033 REMARK 3 T13: -0.0079 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.6475 L22: 0.1658 REMARK 3 L33: 1.3074 L12: 0.3403 REMARK 3 L13: 0.9852 L23: 0.3708 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0824 S13: -0.0437 REMARK 3 S21: -0.0327 S22: 0.0395 S23: -0.0280 REMARK 3 S31: 0.0361 S32: 0.0075 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0612 -23.2321 22.3307 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.5746 REMARK 3 T33: 0.4035 T12: -0.0382 REMARK 3 T13: -0.0048 T23: -0.1288 REMARK 3 L TENSOR REMARK 3 L11: 1.4381 L22: 0.6731 REMARK 3 L33: 1.1057 L12: -0.2316 REMARK 3 L13: 0.0907 L23: -0.8852 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.2837 S13: 0.0686 REMARK 3 S21: -0.0247 S22: 0.1959 S23: -0.2466 REMARK 3 S31: -0.0989 S32: 0.4318 S33: 0.0014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1096 -26.6910 35.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.3591 REMARK 3 T33: 0.3279 T12: -0.0017 REMARK 3 T13: -0.0283 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 1.2419 L22: 0.3919 REMARK 3 L33: 0.8065 L12: 0.3195 REMARK 3 L13: 0.2590 L23: 0.2279 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0363 S13: -0.1736 REMARK 3 S21: 0.0101 S22: 0.0734 S23: -0.0778 REMARK 3 S31: 0.0446 S32: 0.0850 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3665 -30.6303 48.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.5718 REMARK 3 T33: 0.5517 T12: -0.0085 REMARK 3 T13: -0.0723 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 0.0414 L22: 0.2027 REMARK 3 L33: 0.0904 L12: 0.0117 REMARK 3 L13: 0.0370 L23: -0.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.4792 S12: 0.9149 S13: -0.2834 REMARK 3 S21: 0.0606 S22: 0.4578 S23: -0.3617 REMARK 3 S31: 0.4187 S32: 0.2489 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6428 -19.7407 60.5649 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.2615 REMARK 3 T33: 0.2692 T12: 0.0220 REMARK 3 T13: -0.0285 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.5177 L22: 0.7661 REMARK 3 L33: 1.3373 L12: -0.1616 REMARK 3 L13: 0.1395 L23: 0.2349 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: -0.0297 S13: -0.1622 REMARK 3 S21: 0.0733 S22: -0.0110 S23: 0.0300 REMARK 3 S31: 0.1494 S32: -0.0603 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1647 -9.9392 60.9501 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.4455 REMARK 3 T33: 0.3448 T12: 0.0762 REMARK 3 T13: -0.0084 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 0.8567 L22: 1.3768 REMARK 3 L33: 0.4004 L12: -0.0243 REMARK 3 L13: 0.1289 L23: 0.3181 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0584 S13: 0.0832 REMARK 3 S21: 0.1088 S22: -0.0783 S23: 0.1916 REMARK 3 S31: -0.1639 S32: -0.3646 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1972 -23.3500 40.2114 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.5522 REMARK 3 T33: 0.3871 T12: -0.0233 REMARK 3 T13: -0.0016 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.6192 L22: 0.5386 REMARK 3 L33: 0.3624 L12: 0.4153 REMARK 3 L13: 0.0559 L23: 0.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.5285 S13: 0.0530 REMARK 3 S21: 0.1324 S22: -0.0878 S23: 0.0527 REMARK 3 S31: -0.0809 S32: -0.2529 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 36WK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1000309577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 83.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 900-1100 MM SODIUM REMARK 280 POTASSIUM TARTRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.44000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.72500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 197.16000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.72000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 197.16000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.72000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 131.44000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A -8 OG1 CG2 REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 SER A 58 OG REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 SER A 109 OG REMARK 470 SER A 169 OG REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ASN A 220 CG OD1 ND2 REMARK 470 THR A 222 OG1 CG2 REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 THR A 225 OG1 CG2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 THR A 296 OG1 CG2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 THR A 422 OG1 CG2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 19 -41.45 71.40 REMARK 500 PHE A 54 76.27 -114.82 REMARK 500 SER A 107 -40.86 -133.06 REMARK 500 CYS A 126 59.73 -146.21 REMARK 500 LEU A 172 -23.10 68.81 REMARK 500 ASN A 210 -134.68 52.54 REMARK 500 HIS A 219 64.76 -117.46 REMARK 500 ASN A 220 -127.33 50.90 REMARK 500 ILE A 223 -29.81 177.61 REMARK 500 ARG A 245 18.14 57.40 REMARK 500 CYS A 293 58.83 -95.72 REMARK 500 ASP A 365 44.59 -86.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 149 OG REMARK 620 2 DMA A 502 O3A 134.1 REMARK 620 3 HOH A 675 O 65.4 157.9 REMARK 620 N 1 2 DBREF 36WK A 1 443 UNP P07277 ERG12_YEAST 1 443 SEQADV 36WK MET A -24 UNP P07277 INITIATING METHIONINE SEQADV 36WK GLY A -23 UNP P07277 EXPRESSION TAG SEQADV 36WK SER A -22 UNP P07277 EXPRESSION TAG SEQADV 36WK SER A -21 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -20 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -19 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -18 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -17 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -16 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A -15 UNP P07277 EXPRESSION TAG SEQADV 36WK ASP A -14 UNP P07277 EXPRESSION TAG SEQADV 36WK TYR A -13 UNP P07277 EXPRESSION TAG SEQADV 36WK ASP A -12 UNP P07277 EXPRESSION TAG SEQADV 36WK ILE A -11 UNP P07277 EXPRESSION TAG SEQADV 36WK PRO A -10 UNP P07277 EXPRESSION TAG SEQADV 36WK THR A -9 UNP P07277 EXPRESSION TAG SEQADV 36WK THR A -8 UNP P07277 EXPRESSION TAG SEQADV 36WK GLU A -7 UNP P07277 EXPRESSION TAG SEQADV 36WK ASN A -6 UNP P07277 EXPRESSION TAG SEQADV 36WK LEU A -5 UNP P07277 EXPRESSION TAG SEQADV 36WK TYR A -4 UNP P07277 EXPRESSION TAG SEQADV 36WK PHE A -3 UNP P07277 EXPRESSION TAG SEQADV 36WK GLN A -2 UNP P07277 EXPRESSION TAG SEQADV 36WK GLY A -1 UNP P07277 EXPRESSION TAG SEQADV 36WK HIS A 0 UNP P07277 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 468 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 A 468 SER LEU PRO PHE LEU THR SER ALA PRO GLY LYS VAL ILE SEQRES 4 A 468 ILE PHE GLY GLU HIS SER ALA VAL TYR ASN LYS PRO ALA SEQRES 5 A 468 VAL ALA ALA SER VAL SER ALA LEU ARG THR TYR LEU LEU SEQRES 6 A 468 ILE SER GLU SER SER ALA PRO ASP THR ILE GLU LEU ASP SEQRES 7 A 468 PHE PRO ASP ILE SER PHE ASN HIS LYS TRP SER ILE ASN SEQRES 8 A 468 ASP PHE ASN ALA ILE THR GLU ASP GLN VAL ASN SER GLN SEQRES 9 A 468 LYS LEU ALA LYS ALA GLN GLN ALA THR ASP GLY LEU SER SEQRES 10 A 468 GLN GLU LEU VAL SER LEU LEU ASP PRO LEU LEU ALA GLN SEQRES 11 A 468 LEU SER GLU SER PHE HIS TYR HIS ALA ALA PHE CYS PHE SEQRES 12 A 468 LEU TYR MET PHE VAL CYS LEU CYS PRO HIS ALA LYS ASN SEQRES 13 A 468 ILE LYS PHE SER LEU LYS SER THR LEU PRO ILE GLY ALA SEQRES 14 A 468 GLY LEU GLY SER SER ALA SER ILE SER VAL SER LEU ALA SEQRES 15 A 468 LEU ALA MET ALA TYR LEU GLY GLY LEU ILE GLY SER ASN SEQRES 16 A 468 ASP LEU GLU LYS LEU SER GLU ASN ASP LYS HIS ILE VAL SEQRES 17 A 468 ASN GLN TRP ALA PHE ILE GLY GLU LYS CYS ILE HIS GLY SEQRES 18 A 468 THR PRO SER GLY ILE ASP ASN ALA VAL ALA THR TYR GLY SEQRES 19 A 468 ASN ALA LEU LEU PHE GLU LYS ASP SER HIS ASN GLY THR SEQRES 20 A 468 ILE ASN THR ASN ASN PHE LYS PHE LEU ASP ASP PHE PRO SEQRES 21 A 468 ALA ILE PRO MET ILE LEU THR TYR THR ARG ILE PRO ARG SEQRES 22 A 468 SER THR LYS ASP LEU VAL ALA ARG VAL ARG VAL LEU VAL SEQRES 23 A 468 THR GLU LYS PHE PRO GLU VAL MET LYS PRO ILE LEU ASP SEQRES 24 A 468 ALA MET GLY GLU CYS ALA LEU GLN GLY LEU GLU ILE MET SEQRES 25 A 468 THR LYS LEU SER LYS CYS LYS GLY THR ASP ASP GLU ALA SEQRES 26 A 468 VAL GLU THR ASN ASN GLU LEU TYR GLU GLN LEU LEU GLU SEQRES 27 A 468 LEU ILE ARG ILE ASN HIS GLY LEU LEU VAL SER ILE GLY SEQRES 28 A 468 VAL SER HIS PRO GLY LEU GLU LEU ILE LYS ASN LEU SER SEQRES 29 A 468 ASP ASP LEU ARG ILE GLY SER THR LYS LEU THR GLY ALA SEQRES 30 A 468 GLY GLY GLY GLY CYS SER LEU THR LEU LEU ARG ARG ASP SEQRES 31 A 468 ILE THR GLN GLU GLN ILE ASP SER PHE LYS LYS LYS LEU SEQRES 32 A 468 GLN ASP ASP PHE SER TYR GLU THR PHE GLU THR ASP LEU SEQRES 33 A 468 GLY GLY THR GLY CYS CYS LEU LEU SER ALA LYS ASN LEU SEQRES 34 A 468 ASN LYS ASP LEU LYS ILE LYS SER LEU VAL PHE GLN LEU SEQRES 35 A 468 PHE GLU ASN LYS THR THR THR LYS GLN GLN ILE ASP ASP SEQRES 36 A 468 LEU LEU LEU PRO GLY ASN THR ASN LEU PRO TRP THR SER HET MG A 501 1 HET DMA A 502 14 HET TAR A 503 10 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HETNAM MG MAGNESIUM ION HETNAM DMA DIMETHYLALLYL DIPHOSPHATE HETNAM TAR D(-)-TARTARIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 DMA C5 H12 O7 P2 FORMUL 4 TAR C4 H6 O6 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *152(H2 O) HELIX 1 AA1 THR A -8 GLN A -2 1 7 HELIX 2 AA2 HIS A 19 ASN A 24 5 6 HELIX 3 AA3 PRO A 55 SER A 58 5 4 HELIX 4 AA4 ILE A 65 GLU A 73 1 9 HELIX 5 AA5 ASP A 74 GLN A 85 1 12 HELIX 6 AA6 GLN A 86 GLY A 90 5 5 HELIX 7 AA7 SER A 92 ASP A 100 1 9 HELIX 8 AA8 PRO A 101 ALA A 104 5 4 HELIX 9 AA9 GLU A 108 CYS A 126 1 19 HELIX 10 AB1 GLY A 147 GLY A 164 1 18 HELIX 11 AB2 SER A 176 GLY A 196 1 21 HELIX 12 AB3 GLY A 200 GLY A 209 1 10 HELIX 13 AB4 ASN A 224 ASN A 226 5 3 HELIX 14 AB5 SER A 249 GLU A 263 1 15 HELIX 15 AB6 PHE A 265 CYS A 293 1 29 HELIX 16 AB7 ASP A 297 ILE A 325 1 29 HELIX 17 AB8 HIS A 329 LEU A 342 1 14 HELIX 18 AB9 THR A 367 SER A 383 1 17 HELIX 19 AC1 SER A 400 ASN A 405 1 6 HELIX 20 AC2 ASP A 407 ASN A 420 1 14 HELIX 21 AC3 THR A 424 LEU A 433 1 10 SHEET 1 AA1 6 PHE A 59 SER A 64 0 SHEET 2 AA1 6 THR A 49 PHE A 54 -1 N PHE A 54 O PHE A 59 SHEET 3 AA1 6 ILE A 132 SER A 138 1 O PHE A 134 N ASP A 53 SHEET 4 AA1 6 ALA A 27 GLU A 43 -1 N TYR A 38 O LYS A 137 SHEET 5 AA1 6 ALA A 211 PHE A 214 -1 O PHE A 214 N ALA A 27 SHEET 6 AA1 6 PHE A 228 LEU A 231 -1 O LYS A 229 N LEU A 213 SHEET 1 AA2 6 PHE A 59 SER A 64 0 SHEET 2 AA2 6 THR A 49 PHE A 54 -1 N PHE A 54 O PHE A 59 SHEET 3 AA2 6 ILE A 132 SER A 138 1 O PHE A 134 N ASP A 53 SHEET 4 AA2 6 ALA A 27 GLU A 43 -1 N TYR A 38 O LYS A 137 SHEET 5 AA2 6 PHE A 5 PHE A 16 -1 N THR A 7 O LEU A 39 SHEET 6 AA2 6 CYS A 397 LEU A 399 -1 O LEU A 399 N LEU A 6 SHEET 1 AA3 4 GLY A 345 THR A 350 0 SHEET 2 AA3 4 CYS A 357 LEU A 362 -1 O LEU A 359 N LYS A 348 SHEET 3 AA3 4 ILE A 237 TYR A 243 -1 N PRO A 238 O LEU A 362 SHEET 4 AA3 4 GLU A 385 LEU A 391 -1 O PHE A 387 N LEU A 241 LINK OG SER A 149 MG MG A 501 1555 1555 2.91 LINK MG MG A 501 O3A DMA A 502 1555 1555 2.67 LINK MG MG A 501 O HOH A 675 1555 1555 2.69 CISPEP 1 LEU A 3 PRO A 4 0 -2.31 CRYST1 83.450 83.450 262.880 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003804 0.00000 CONECT 1214 3442 CONECT 3442 1214 3452 3553 CONECT 3443 3444 3445 CONECT 3444 3443 3449 CONECT 3445 3443 3446 CONECT 3446 3445 3447 3448 CONECT 3447 3446 CONECT 3448 3446 CONECT 3449 3444 3450 3451 3452 CONECT 3450 3449 CONECT 3451 3449 CONECT 3452 3442 3449 3453 CONECT 3453 3452 3454 3455 3456 CONECT 3454 3453 CONECT 3455 3453 CONECT 3456 3453 CONECT 3457 3459 CONECT 3458 3459 CONECT 3459 3457 3458 3460 CONECT 3460 3459 3461 3462 CONECT 3461 3460 CONECT 3462 3460 3463 3464 CONECT 3463 3462 CONECT 3464 3462 3465 3466 CONECT 3465 3464 CONECT 3466 3464 CONECT 3467 3468 3469 CONECT 3468 3467 CONECT 3469 3467 3470 CONECT 3470 3469 CONECT 3471 3472 3473 CONECT 3472 3471 CONECT 3473 3471 3474 CONECT 3474 3473 CONECT 3475 3476 3477 CONECT 3476 3475 CONECT 3477 3475 3478 CONECT 3478 3477 CONECT 3553 3442 MASTER 436 0 6 21 16 0 0 6 3597 1 39 36 END