data_377D # _entry.id 377D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 377D pdb_0000377d 10.2210/pdb377d/pdb RCSB ARF0108 ? ? WWPDB D_1000178845 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-10 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2018-04-11 6 'Structure model' 1 5 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' diffrn_source 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_diffrn_source.source' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 377D _pdbx_database_status.recvd_initial_deposition_date 1998-01-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Biswas, R.' 1 'Mitra, S.N.' 2 'Sundaralingam, M.' 3 # _citation.id primary _citation.title '1.76 A structure of a pyrimidine start alternating A-RNA hexamer r(CGUAC)dG.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 54 _citation.page_first 570 _citation.page_last 576 _citation.year 1998 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9761851 _citation.pdbx_database_id_DOI 10.1107/S0907444997013097 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Biswas, R.' 1 ? primary 'Mitra, S.N.' 2 ? primary 'Sundaralingam, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3') ; 1875.189 4 ? ? ? ? 2 water nat water 18.015 85 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'CGUAC(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGUACG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 A n 1 5 C n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 C 1 7 7 C C B . n B 1 2 G 2 8 8 G G B . n B 1 3 U 3 9 9 U U B . n B 1 4 A 4 10 10 A A B . n B 1 5 C 5 11 11 C C B . n B 1 6 DG 6 12 12 DG DG B . n C 1 1 C 1 13 13 C C C . n C 1 2 G 2 14 14 G G C . n C 1 3 U 3 15 15 U U C . n C 1 4 A 4 16 16 A A C . n C 1 5 C 5 17 17 C C C . n C 1 6 DG 6 18 18 DG DG C . n D 1 1 C 1 19 19 C C D . n D 1 2 G 2 20 20 G G D . n D 1 3 U 3 21 21 U U D . n D 1 4 A 4 22 22 A A D . n D 1 5 C 5 23 23 C C D . n D 1 6 DG 6 24 24 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 28 28 HOH HOH A . E 2 HOH 2 29 29 HOH HOH A . E 2 HOH 3 34 34 HOH HOH A . E 2 HOH 4 37 37 HOH HOH A . E 2 HOH 5 38 38 HOH HOH A . E 2 HOH 6 48 48 HOH HOH A . E 2 HOH 7 57 57 HOH HOH A . E 2 HOH 8 66 66 HOH HOH A . E 2 HOH 9 74 74 HOH HOH A . E 2 HOH 10 77 77 HOH HOH A . E 2 HOH 11 85 85 HOH HOH A . E 2 HOH 12 87 87 HOH HOH A . E 2 HOH 13 88 88 HOH HOH A . E 2 HOH 14 92 92 HOH HOH A . E 2 HOH 15 95 95 HOH HOH A . E 2 HOH 16 98 98 HOH HOH A . E 2 HOH 17 103 103 HOH HOH A . E 2 HOH 18 104 104 HOH HOH A . E 2 HOH 19 109 109 HOH HOH A . F 2 HOH 1 25 25 HOH HOH B . F 2 HOH 2 30 30 HOH HOH B . F 2 HOH 3 31 31 HOH HOH B . F 2 HOH 4 36 36 HOH HOH B . F 2 HOH 5 40 40 HOH HOH B . F 2 HOH 6 50 50 HOH HOH B . F 2 HOH 7 51 51 HOH HOH B . F 2 HOH 8 53 53 HOH HOH B . F 2 HOH 9 58 58 HOH HOH B . F 2 HOH 10 60 60 HOH HOH B . F 2 HOH 11 61 61 HOH HOH B . F 2 HOH 12 62 62 HOH HOH B . F 2 HOH 13 63 63 HOH HOH B . F 2 HOH 14 64 64 HOH HOH B . F 2 HOH 15 65 65 HOH HOH B . F 2 HOH 16 67 67 HOH HOH B . F 2 HOH 17 70 70 HOH HOH B . F 2 HOH 18 84 84 HOH HOH B . F 2 HOH 19 89 89 HOH HOH B . F 2 HOH 20 90 90 HOH HOH B . F 2 HOH 21 91 91 HOH HOH B . F 2 HOH 22 93 93 HOH HOH B . F 2 HOH 23 96 96 HOH HOH B . F 2 HOH 24 97 97 HOH HOH B . F 2 HOH 25 101 101 HOH HOH B . F 2 HOH 26 107 107 HOH HOH B . F 2 HOH 27 108 108 HOH HOH B . G 2 HOH 1 41 41 HOH HOH C . G 2 HOH 2 43 43 HOH HOH C . G 2 HOH 3 44 44 HOH HOH C . G 2 HOH 4 45 45 HOH HOH C . G 2 HOH 5 49 49 HOH HOH C . G 2 HOH 6 52 52 HOH HOH C . G 2 HOH 7 54 54 HOH HOH C . G 2 HOH 8 55 55 HOH HOH C . G 2 HOH 9 68 68 HOH HOH C . G 2 HOH 10 69 69 HOH HOH C . G 2 HOH 11 72 72 HOH HOH C . G 2 HOH 12 73 73 HOH HOH C . G 2 HOH 13 75 75 HOH HOH C . G 2 HOH 14 76 76 HOH HOH C . G 2 HOH 15 79 79 HOH HOH C . G 2 HOH 16 80 80 HOH HOH C . G 2 HOH 17 82 82 HOH HOH C . G 2 HOH 18 83 83 HOH HOH C . G 2 HOH 19 86 86 HOH HOH C . G 2 HOH 20 94 94 HOH HOH C . G 2 HOH 21 99 99 HOH HOH C . G 2 HOH 22 102 102 HOH HOH C . G 2 HOH 23 105 105 HOH HOH C . G 2 HOH 24 106 106 HOH HOH C . H 2 HOH 1 26 26 HOH HOH D . H 2 HOH 2 27 27 HOH HOH D . H 2 HOH 3 32 32 HOH HOH D . H 2 HOH 4 33 33 HOH HOH D . H 2 HOH 5 35 35 HOH HOH D . H 2 HOH 6 39 39 HOH HOH D . H 2 HOH 7 42 42 HOH HOH D . H 2 HOH 8 46 46 HOH HOH D . H 2 HOH 9 47 47 HOH HOH D . H 2 HOH 10 56 56 HOH HOH D . H 2 HOH 11 59 59 HOH HOH D . H 2 HOH 12 71 71 HOH HOH D . H 2 HOH 13 78 78 HOH HOH D . H 2 HOH 14 81 81 HOH HOH D . H 2 HOH 15 100 100 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 R-AXIS 'data reduction' . ? 2 R-AXIS 'data scaling' . ? 3 # _cell.entry_id 377D _cell.length_a 29.530 _cell.length_b 44.610 _cell.length_c 94.180 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 377D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 377D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.51 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 291.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU R-AXIS II' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _refine.entry_id 377D _refine.ls_number_reflns_obs 4757 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.760 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1880000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1880000 _refine.ls_R_factor_R_free 0.2320000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 496 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 581 _refine_hist.d_res_high 1.760 _refine_hist.d_res_low 8.000 # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM_ND.DNA _pdbx_xplor_file.topol_file TOP_NDBX.DNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 377D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 377D _struct.title "5'-R(*CP*GP*UP*AP*CP*DG)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 377D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'A-RNA, DOUBLE HELIX, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 377D _struct_ref.pdbx_db_accession 377D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 377D A 1 ? 6 ? 377D 1 ? 6 ? 1 6 2 1 377D B 1 ? 6 ? 377D 7 ? 12 ? 7 12 3 1 377D C 1 ? 6 ? 377D 13 ? 18 ? 13 18 4 1 377D D 1 ? 6 ? 377D 19 ? 24 ? 19 24 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 630 ? 1 MORE -0.9 ? 1 'SSA (A^2)' 2370 ? 2 'ABSA (A^2)' 630 ? 2 MORE -0.4 ? 2 'SSA (A^2)' 2380 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A C 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A C 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A C 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 3 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 3 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 4 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 4 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B C 1 N3 ? ? A DG 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B C 1 O2 ? ? A DG 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B C 1 N4 ? ? A DG 6 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C C 1 N3 ? ? ? 1_555 D DG 6 N1 ? ? C C 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C C 1 N4 ? ? ? 1_555 D DG 6 O6 ? ? C C 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C C 1 O2 ? ? ? 1_555 D DG 6 N2 ? ? C C 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 14 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 14 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 14 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 4 N1 ? ? C U 15 D A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 4 N6 ? ? C U 15 D A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C A 4 N1 ? ? ? 1_555 D U 3 N3 ? ? C A 16 D U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 4 N6 ? ? ? 1_555 D U 3 O4 ? ? C A 16 D U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 17 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 17 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 17 D G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D C 1 N3 ? ? C DG 18 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D C 1 O2 ? ? C DG 18 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D C 1 N4 ? ? C DG 18 D C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DG OP3 P sing N N 76 DG OP3 HOP3 sing N N 77 DG P OP1 doub N N 78 DG P OP2 sing N N 79 DG P "O5'" sing N N 80 DG OP2 HOP2 sing N N 81 DG "O5'" "C5'" sing N N 82 DG "C5'" "C4'" sing N N 83 DG "C5'" "H5'" sing N N 84 DG "C5'" "H5''" sing N N 85 DG "C4'" "O4'" sing N N 86 DG "C4'" "C3'" sing N N 87 DG "C4'" "H4'" sing N N 88 DG "O4'" "C1'" sing N N 89 DG "C3'" "O3'" sing N N 90 DG "C3'" "C2'" sing N N 91 DG "C3'" "H3'" sing N N 92 DG "O3'" "HO3'" sing N N 93 DG "C2'" "C1'" sing N N 94 DG "C2'" "H2'" sing N N 95 DG "C2'" "H2''" sing N N 96 DG "C1'" N9 sing N N 97 DG "C1'" "H1'" sing N N 98 DG N9 C8 sing Y N 99 DG N9 C4 sing Y N 100 DG C8 N7 doub Y N 101 DG C8 H8 sing N N 102 DG N7 C5 sing Y N 103 DG C5 C6 sing N N 104 DG C5 C4 doub Y N 105 DG C6 O6 doub N N 106 DG C6 N1 sing N N 107 DG N1 C2 sing N N 108 DG N1 H1 sing N N 109 DG C2 N2 sing N N 110 DG C2 N3 doub N N 111 DG N2 H21 sing N N 112 DG N2 H22 sing N N 113 DG N3 C4 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 U OP3 P sing N N 157 U OP3 HOP3 sing N N 158 U P OP1 doub N N 159 U P OP2 sing N N 160 U P "O5'" sing N N 161 U OP2 HOP2 sing N N 162 U "O5'" "C5'" sing N N 163 U "C5'" "C4'" sing N N 164 U "C5'" "H5'" sing N N 165 U "C5'" "H5''" sing N N 166 U "C4'" "O4'" sing N N 167 U "C4'" "C3'" sing N N 168 U "C4'" "H4'" sing N N 169 U "O4'" "C1'" sing N N 170 U "C3'" "O3'" sing N N 171 U "C3'" "C2'" sing N N 172 U "C3'" "H3'" sing N N 173 U "O3'" "HO3'" sing N N 174 U "C2'" "O2'" sing N N 175 U "C2'" "C1'" sing N N 176 U "C2'" "H2'" sing N N 177 U "O2'" "HO2'" sing N N 178 U "C1'" N1 sing N N 179 U "C1'" "H1'" sing N N 180 U N1 C2 sing N N 181 U N1 C6 sing N N 182 U C2 O2 doub N N 183 U C2 N3 sing N N 184 U N3 C4 sing N N 185 U N3 H3 sing N N 186 U C4 O4 doub N N 187 U C4 C5 sing N N 188 U C5 C6 doub N N 189 U C5 H5 sing N N 190 U C6 H6 sing N N 191 # _ndb_struct_conf_na.entry_id 377D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B DG 6 1_555 0.261 -0.443 0.122 -0.883 -8.412 -3.167 1 A_C1:DG12_B A 1 ? B 12 ? 19 1 1 A G 2 1_555 B C 5 1_555 -0.393 0.048 0.247 -3.361 -17.234 3.625 2 A_G2:C11_B A 2 ? B 11 ? 19 1 1 A U 3 1_555 B A 4 1_555 -0.266 -0.262 -0.045 -0.213 -16.852 -2.309 3 A_U3:A10_B A 3 ? B 10 ? 20 1 1 A A 4 1_555 B U 3 1_555 -0.079 -0.079 -0.003 -4.358 -10.099 -1.307 4 A_A4:U9_B A 4 ? B 9 ? 20 1 1 A C 5 1_555 B G 2 1_555 0.262 -0.278 0.034 4.586 -18.086 0.281 5 A_C5:G8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B C 1 1_555 0.051 -0.433 0.172 -4.074 -10.631 -1.318 6 A_DG6:C7_B A 6 ? B 7 ? 19 1 1 C C 1 1_555 D DG 6 1_555 0.128 -0.330 -0.407 9.758 -15.310 -3.735 7 C_C13:DG24_D C 13 ? D 24 ? 19 1 1 C G 2 1_555 D C 5 1_555 -0.346 -0.356 0.277 0.457 -18.797 4.773 8 C_G14:C23_D C 14 ? D 23 ? 19 1 1 C U 3 1_555 D A 4 1_555 0.141 -0.059 0.123 1.335 -14.962 3.402 9 C_U15:A22_D C 15 ? D 22 ? 20 1 1 C A 4 1_555 D U 3 1_555 0.235 -0.085 0.015 -2.625 -17.283 1.898 10 C_A16:U21_D C 16 ? D 21 ? 20 1 1 C C 5 1_555 D G 2 1_555 0.334 -0.156 0.097 4.403 -16.263 4.907 11 C_C17:G20_D C 17 ? D 20 ? 19 1 1 C DG 6 1_555 D C 1 1_555 0.531 -0.271 0.033 -7.514 -18.693 -1.880 12 C_DG18:C19_D C 18 ? D 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B DG 6 1_555 A G 2 1_555 B C 5 1_555 -0.263 -1.552 3.152 -2.200 17.782 31.656 -4.617 0.160 2.037 29.801 3.686 36.262 1 AA_C1G2:C11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A G 2 1_555 B C 5 1_555 A U 3 1_555 B A 4 1_555 -0.373 -1.222 3.158 1.156 10.235 32.572 -3.560 0.802 2.650 17.705 -2.000 34.120 2 AA_G2U3:A10C11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A U 3 1_555 B A 4 1_555 A A 4 1_555 B U 3 1_555 0.203 -1.457 3.335 0.185 17.417 31.277 -4.680 -0.307 2.241 29.606 -0.315 35.694 3 AA_U3A4:U9A10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A A 4 1_555 B U 3 1_555 A C 5 1_555 B G 2 1_555 0.549 -1.066 3.111 1.601 8.943 33.012 -3.102 -0.703 2.760 15.378 -2.753 34.206 4 AA_A4C5:G8U9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A C 5 1_555 B G 2 1_555 A DG 6 1_555 B C 1 1_555 0.255 -1.397 3.365 2.070 14.986 33.600 -4.152 -0.137 2.546 24.444 -3.376 36.759 5 AA_C5DG6:C7G8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 C C 1 1_555 D DG 6 1_555 C G 2 1_555 D C 5 1_555 0.358 -1.344 3.400 -4.030 18.419 34.271 -4.111 -0.995 2.351 28.724 6.284 38.979 6 CC_C13G14:C23DG24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 C G 2 1_555 D C 5 1_555 C U 3 1_555 D A 4 1_555 -0.428 -0.976 3.265 -0.119 11.097 33.922 -3.133 0.683 2.819 18.417 0.197 35.641 7 CC_G14U15:A22C23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 C U 3 1_555 D A 4 1_555 C A 4 1_555 D U 3 1_555 -0.341 -1.277 3.268 0.464 16.449 31.051 -4.368 0.630 2.316 28.367 -0.801 35.047 8 CC_U15A16:U21A22_DD C 15 ? D 22 ? C 16 ? D 21 ? 1 C A 4 1_555 D U 3 1_555 C C 5 1_555 D G 2 1_555 0.707 -1.076 3.102 1.962 11.183 33.559 -3.262 -0.903 2.656 18.715 -3.283 35.376 9 CC_A16C17:G20U21_DD C 16 ? D 21 ? C 17 ? D 20 ? 1 C C 5 1_555 D G 2 1_555 C DG 6 1_555 D C 1 1_555 -0.068 -1.343 3.370 3.970 18.300 34.709 -4.041 0.544 2.377 28.275 -6.134 39.301 10 CC_C17DG18:C19G20_DD C 17 ? D 20 ? C 18 ? D 19 ? # _atom_sites.entry_id 377D _atom_sites.fract_transf_matrix[1][1] 0.033864 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022416 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010618 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_