HEADER TRANSFERASE 17-JUL-26 37EP TITLE CRYSTAL STRUCTURE OF HISTONE-LYSINE N-METHYLTRANSFERASE FROM TITLE 2 LEISHMANIA MAJOR IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E50-K299; COMPND 5 SYNONYM: HISTONE H3-K76 METHYLTRANSFERASE,HISTONE H3-K79 COMPND 6 METHYLTRANSFERASE,HISTONE-LYSINE N-METHYLTRANSFERASE,H3 LYSINE-76 COMPND 7 SPECIFIC; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR STRAIN FRIEDLIN; SOURCE 3 ORGANISM_TAXID: 347515; SOURCE 4 GENE: LMJF_07_0025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: LEMAA.18205.A.B2 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, HISTONE-LYSINE N-METHYLTRANSFERASE, LEISHMANIA KEYWDS 3 MAJOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 29-JUL-26 37EP 0 JRNL AUTH L.LIU,S.LOVELL,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF HISTONE-LYSINE N-METHYLTRANSFERASE FROM JRNL TITL 2 LEISHMANIA MAJOR IN COMPLEX WITH ATP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2000 - 3.5600 1.00 2915 164 0.1799 0.2177 REMARK 3 2 3.5600 - 2.8300 1.00 2786 139 0.2114 0.2375 REMARK 3 3 2.8300 - 2.4700 1.00 2735 154 0.2572 0.2668 REMARK 3 4 2.4700 - 2.2400 1.00 2723 126 0.2733 0.3381 REMARK 3 5 2.2400 - 2.0800 1.00 2743 149 0.3222 0.4226 REMARK 3 6 2.0800 - 1.9600 1.00 2658 168 0.3942 0.4545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2073 REMARK 3 ANGLE : 0.722 2834 REMARK 3 CHIRALITY : 0.055 310 REMARK 3 PLANARITY : 0.005 355 REMARK 3 DIHEDRAL : 16.257 806 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4122 30.3805 -11.5174 REMARK 3 T TENSOR REMARK 3 T11: 0.5349 T22: 0.5086 REMARK 3 T33: 0.8060 T12: -0.0230 REMARK 3 T13: -0.0216 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 0.0603 L22: 0.0455 REMARK 3 L33: 0.9532 L12: 0.0337 REMARK 3 L13: 0.0863 L23: -0.1091 REMARK 3 S TENSOR REMARK 3 S11: -0.4605 S12: 0.1350 S13: 1.2215 REMARK 3 S21: -0.2264 S22: 0.2520 S23: -0.0201 REMARK 3 S31: -0.1576 S32: 0.0673 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1217 18.2123 -2.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.5454 T22: 0.5698 REMARK 3 T33: 0.6979 T12: 0.0413 REMARK 3 T13: 0.0062 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.0610 L22: 0.1040 REMARK 3 L33: 0.0393 L12: -0.0164 REMARK 3 L13: -0.0129 L23: -0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.2789 S12: 0.2478 S13: 0.5143 REMARK 3 S21: -0.1246 S22: 0.3505 S23: 0.2414 REMARK 3 S31: -0.1341 S32: -0.4612 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7498 17.2177 0.5945 REMARK 3 T TENSOR REMARK 3 T11: 0.4426 T22: 0.4598 REMARK 3 T33: 0.5575 T12: -0.0150 REMARK 3 T13: -0.0442 T23: 0.0995 REMARK 3 L TENSOR REMARK 3 L11: 0.1826 L22: 0.5142 REMARK 3 L33: 0.2036 L12: 0.0593 REMARK 3 L13: -0.1575 L23: 0.1848 REMARK 3 S TENSOR REMARK 3 S11: -0.1280 S12: 0.0320 S13: -0.3664 REMARK 3 S21: -0.0483 S22: -0.2181 S23: -0.0151 REMARK 3 S31: -0.0827 S32: 0.2320 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8663 9.2802 -8.3766 REMARK 3 T TENSOR REMARK 3 T11: 0.4513 T22: 0.4476 REMARK 3 T33: 0.3162 T12: -0.0489 REMARK 3 T13: -0.0292 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1925 L22: 0.6175 REMARK 3 L33: 0.0520 L12: 0.2655 REMARK 3 L13: 0.0174 L23: -0.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.1875 S12: -0.1387 S13: 0.3986 REMARK 3 S21: 0.0066 S22: 0.2439 S23: 0.6195 REMARK 3 S31: -0.0694 S32: -0.0674 S33: 0.0929 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7768 5.0984 -4.3792 REMARK 3 T TENSOR REMARK 3 T11: 0.4885 T22: 0.4792 REMARK 3 T33: 0.7817 T12: -0.0256 REMARK 3 T13: -0.0636 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.7234 L22: 0.5396 REMARK 3 L33: 0.0598 L12: 0.5511 REMARK 3 L13: -0.0461 L23: -0.1510 REMARK 3 S TENSOR REMARK 3 S11: 0.0842 S12: 0.1504 S13: -0.5197 REMARK 3 S21: 0.1898 S22: 0.1534 S23: 0.7304 REMARK 3 S31: 0.1704 S32: 0.0711 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6247 5.2982 -6.4059 REMARK 3 T TENSOR REMARK 3 T11: 0.4836 T22: 0.5013 REMARK 3 T33: 0.6046 T12: 0.0113 REMARK 3 T13: -0.0155 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5435 L22: 0.5935 REMARK 3 L33: 0.4731 L12: 0.5712 REMARK 3 L13: -0.5158 L23: -0.5343 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.0440 S13: -0.5175 REMARK 3 S21: -0.0801 S22: 0.2055 S23: -0.6659 REMARK 3 S31: -0.0703 S32: 0.2112 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8570 15.4960 -4.2213 REMARK 3 T TENSOR REMARK 3 T11: 0.5523 T22: 0.5710 REMARK 3 T33: 0.7331 T12: -0.0395 REMARK 3 T13: -0.0361 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0539 L22: 0.0700 REMARK 3 L33: 0.1001 L12: 0.0056 REMARK 3 L13: 0.0283 L23: 0.0825 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: 0.3049 S13: -0.0082 REMARK 3 S21: -0.0331 S22: 0.1621 S23: -0.5324 REMARK 3 S31: 0.0341 S32: 0.0385 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1204 17.4891 -9.9717 REMARK 3 T TENSOR REMARK 3 T11: 0.5046 T22: 0.5035 REMARK 3 T33: 0.7666 T12: -0.0016 REMARK 3 T13: 0.0325 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 0.0189 L22: 0.1105 REMARK 3 L33: 0.0910 L12: 0.0444 REMARK 3 L13: -0.0419 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: 0.0006 S13: -0.4600 REMARK 3 S21: 0.0352 S22: 0.2190 S23: -0.4006 REMARK 3 S31: -0.0463 S32: 0.1610 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3404 22.3704 -3.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.4881 T22: 0.5054 REMARK 3 T33: 0.5751 T12: -0.0291 REMARK 3 T13: -0.0041 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.4435 L22: 0.4243 REMARK 3 L33: 0.5402 L12: 0.1858 REMARK 3 L13: 0.0829 L23: -0.3991 REMARK 3 S TENSOR REMARK 3 S11: -0.2317 S12: 0.1898 S13: 0.0797 REMARK 3 S21: 0.0188 S22: -0.1355 S23: 0.2824 REMARK 3 S31: -0.0139 S32: -0.1370 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 37EP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1000309982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 46.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% P3350, 0.1M BT 5.5, 0.2M NACL. REMARK 280 LEMAA.18205.A.B2.PW39520 AT 12.4 MG/ML. OVERNIGHT SOAK IN 5 MM REMARK 280 ATP IN CRYO, PLATE 20826 E7, PUCK: PSL-0614, CRYO: 33% P3350, REMARK 280 0.1M BT 5.5, 0.2M NACL, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.62900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.19850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.62900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.19850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 42 REMARK 465 ALA A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 GLY A 107 REMARK 465 ALA A 108 REMARK 465 ARG A 109 REMARK 465 GLN A 110 REMARK 465 LEU A 111 REMARK 465 CYS A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 49 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 SER A 106 OG REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 57.43 -140.99 REMARK 500 HIS A 256 31.21 -144.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 76 SG 116.0 REMARK 620 3 CYS A 81 SG 106.7 107.2 REMARK 620 4 CYS A 83 SG 114.9 101.2 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 301 O1B REMARK 620 2 ATP A 301 O2B 7.7 REMARK 620 N 1 DBREF 37EP A 50 299 UNP Q4QIU2 Q4QIU2_LEIMA 50 299 SEQADV 37EP MET A 42 UNP Q4QIU2 INITIATING METHIONINE SEQADV 37EP ALA A 43 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 44 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 45 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 46 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 47 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 48 UNP Q4QIU2 EXPRESSION TAG SEQADV 37EP HIS A 49 UNP Q4QIU2 EXPRESSION TAG SEQRES 1 A 258 MET ALA HIS HIS HIS HIS HIS HIS GLU LEU GLY SER GLY SEQRES 2 A 258 SER PRO HIS ASP PRO ILE HIS LEU PRO LEU ARG ARG THR SEQRES 3 A 258 PRO ASN GLY SER GLY CYS TYR HIS CYS THR THR GLU GLU SEQRES 4 A 258 CYS CYS CYS VAL GLU PHE GLU LYS ILE LEU SER ASN THR SEQRES 5 A 258 TYR ALA ARG VAL PRO LYS LYS ARG MET VAL GLU VAL SER SEQRES 6 A 258 GLY ALA ARG GLN LEU CYS ALA LYS SER LEU LEU THR PRO SEQRES 7 A 258 PHE VAL THR ARG LEU VAL ARG LEU MET ASN ILE THR GLU SEQRES 8 A 258 LYS ASP THR PHE TYR ASP PHE GLY CYS GLY ASN GLY SER SEQRES 9 A 258 VAL LEU PHE GLN VAL ALA PHE MET THR GLY ALA LYS CYS SEQRES 10 A 258 VAL GLY VAL GLU ILE SER GLU HIS ASN ALA ASP VAL ALA SEQRES 11 A 258 ARG GLU ALA TRP GLN LEU LEU ARG GLN VAL LEU GLU LYS SEQRES 12 A 258 LYS TYR ASP ARG PRO MET PRO ARG VAL GLU ILE ILE THR SEQRES 13 A 258 ALA ASP LEU ALA GLU LEU LEU SER THR PRO THR TYR PHE SEQRES 14 A 258 ASP GLU GLU GLU GLY GLN THR ALA ILE LEU ILE SER ASN SEQRES 15 A 258 LEU LEU PHE PRO LYS PRO LEU THR HIS PHE LEU SER GLU SEQRES 16 A 258 ARG LEU ARG SER ALA PRO VAL GLY THR ARG ILE LEU CYS SEQRES 17 A 258 PHE ASP ASP LEU TYR PRO HIS ALA ARG SER VAL ALA SER SEQRES 18 A 258 TYR ARG ASP PRO GLY ALA PHE GLU LEU PHE GLU MET LYS SEQRES 19 A 258 ASP TYR PHE TRP GLN GLU MET SER VAL GLU TRP CYS SER SEQRES 20 A 258 MET GLU GLY ARG PHE PHE ILE HIS THR ARG LYS HET ATP A 301 62 HET ZN A 302 1 HET CL A 303 1 HET CL A 304 1 HET MG A 305 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 ZN ZN 2+ FORMUL 4 CL 2(CL 1-) FORMUL 6 MG MG 2+ FORMUL 7 HOH *58(H2 O) HELIX 1 AA1 CYS A 82 VAL A 97 1 16 HELIX 2 AA2 ARG A 101 SER A 106 1 6 HELIX 3 AA3 LEU A 117 MET A 128 1 12 HELIX 4 AA4 GLY A 144 GLY A 155 1 12 HELIX 5 AA5 SER A 164 ASP A 187 1 24 HELIX 6 AA6 ASP A 199 LEU A 204 1 6 HELIX 7 AA7 PHE A 210 GLU A 214 5 5 HELIX 8 AA8 PRO A 227 ARG A 239 1 13 HELIX 9 AA9 SER A 259 TYR A 263 5 5 HELIX 10 AB1 GLY A 267 LEU A 271 1 5 SHEET 1 AA1 7 VAL A 193 THR A 197 0 SHEET 2 AA1 7 LYS A 157 GLU A 162 1 N GLY A 160 O ILE A 196 SHEET 3 AA1 7 THR A 135 PHE A 139 1 N PHE A 136 O VAL A 159 SHEET 4 AA1 7 THR A 217 ILE A 221 1 O LEU A 220 N PHE A 139 SHEET 5 AA1 7 ARG A 246 CYS A 249 1 O LEU A 248 N ILE A 219 SHEET 6 AA1 7 GLY A 291 ARG A 298 -1 O PHE A 294 N CYS A 249 SHEET 7 AA1 7 PHE A 272 TRP A 279 -1 N TRP A 279 O GLY A 291 LINK SG CYS A 73 ZN ZN A 302 1555 1555 2.34 LINK SG CYS A 76 ZN ZN A 302 1555 1555 2.33 LINK SG CYS A 81 ZN ZN A 302 1555 1555 2.33 LINK SG CYS A 83 ZN ZN A 302 1555 1555 2.33 LINK O1BBATP A 301 MG MG A 305 1555 1555 2.43 LINK O2BAATP A 301 MG MG A 305 1555 1555 2.61 CRYST1 69.258 92.397 36.537 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027370 0.00000 CONECT 173 2015 CONECT 201 2015 CONECT 239 2015 CONECT 251 2015 CONECT 1953 1955 1957 1959 1967 CONECT 1954 1956 1958 1960 1968 CONECT 1955 1953 CONECT 1956 1954 CONECT 1957 1953 CONECT 1958 1954 CONECT 1959 1953 CONECT 1960 1954 CONECT 1961 1963 1965 1967 1975 CONECT 1962 1964 1966 1968 1976 CONECT 1963 1961 CONECT 1964 1962 2018 CONECT 1965 1961 2018 CONECT 1966 1962 CONECT 1967 1953 1961 CONECT 1968 1954 1962 CONECT 1969 1971 1973 1975 1977 CONECT 1970 1972 1974 1976 1978 CONECT 1971 1969 CONECT 1972 1970 CONECT 1973 1969 CONECT 1974 1970 CONECT 1975 1961 1969 CONECT 1976 1962 1970 CONECT 1977 1969 1979 CONECT 1978 1970 1980 CONECT 1979 1977 1981 CONECT 1980 1978 1982 CONECT 1981 1979 1983 1985 CONECT 1982 1980 1984 1986 CONECT 1983 1981 1993 CONECT 1984 1982 1994 CONECT 1985 1981 1987 1989 CONECT 1986 1982 1988 1990 CONECT 1987 1985 CONECT 1988 1986 CONECT 1989 1985 1991 1993 CONECT 1990 1986 1992 1994 CONECT 1991 1989 CONECT 1992 1990 CONECT 1993 1983 1989 1995 CONECT 1994 1984 1990 1996 CONECT 1995 1993 1997 2013 CONECT 1996 1994 1998 2014 CONECT 1997 1995 1999 CONECT 1998 1996 2000 CONECT 1999 1997 2001 CONECT 2000 1998 2002 CONECT 2001 1999 2003 2013 CONECT 2002 2000 2004 2014 CONECT 2003 2001 2005 2007 CONECT 2004 2002 2006 2008 CONECT 2005 2003 CONECT 2006 2004 CONECT 2007 2003 2009 CONECT 2008 2004 2010 CONECT 2009 2007 2011 CONECT 2010 2008 2012 CONECT 2011 2009 2013 CONECT 2012 2010 2014 CONECT 2013 1995 2001 2011 CONECT 2014 1996 2002 2012 CONECT 2015 173 201 239 251 CONECT 2018 1964 1965 MASTER 403 0 5 10 7 0 0 6 2029 1 68 20 END