HEADER HYDROLASE 25-JUL-26 37LZ TITLE STRUCTURE OF KOMA IN COMPLEX WITH PENTOSTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KOMA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: NCTC13216 (NZ_CAADJL010000005); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS KOMA DAMP DEAMINASE, BACTERIAL KONGMING PHAGE-DEFENSE SYSTEM, KEYWDS 2 PENTOSTATIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,J.R.HORTON,X.CHENG REVDAT 1 11-NOV-26 37LZ 0 JRNL AUTH J.ZHOU,J.R.HORTON,X.CHENG JRNL TITL STRUCTURE OF KOMA IN COMPLEX WITH PENTOSTATIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7700 - 5.7800 1.00 2844 122 0.2069 0.2390 REMARK 3 2 5.7800 - 4.5900 1.00 2795 127 0.2013 0.2145 REMARK 3 3 4.5900 - 4.0100 1.00 2817 131 0.1839 0.2176 REMARK 3 4 4.0100 - 3.6400 1.00 2780 147 0.1944 0.2343 REMARK 3 5 3.6400 - 3.3800 1.00 2745 150 0.2137 0.2891 REMARK 3 6 3.3800 - 3.1800 1.00 2726 149 0.2216 0.2684 REMARK 3 7 3.1800 - 3.0300 1.00 2814 143 0.2357 0.2868 REMARK 3 8 3.0200 - 2.8900 1.00 2779 132 0.2552 0.3185 REMARK 3 9 2.8900 - 2.7800 1.00 2740 166 0.2556 0.3156 REMARK 3 10 2.7800 - 2.6900 1.00 2781 122 0.2625 0.2977 REMARK 3 11 2.6900 - 2.6000 1.00 2746 149 0.2759 0.3335 REMARK 3 12 2.6000 - 2.5300 1.00 2778 148 0.3047 0.3313 REMARK 3 13 2.5300 - 2.4600 1.00 2731 151 0.3193 0.3356 REMARK 3 14 2.4600 - 2.4000 0.99 2736 158 0.3431 0.3379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.356 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.761 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5242 REMARK 3 ANGLE : 0.570 7103 REMARK 3 CHIRALITY : 0.047 822 REMARK 3 PLANARITY : 0.006 918 REMARK 3 DIHEDRAL : 11.873 1947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8925 -23.7536 31.5914 REMARK 3 T TENSOR REMARK 3 T11: 0.5079 T22: 0.3030 REMARK 3 T33: 0.2304 T12: -0.0883 REMARK 3 T13: -0.0554 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.2234 L22: 1.2206 REMARK 3 L33: 3.1914 L12: -0.1220 REMARK 3 L13: -0.9925 L23: -0.2800 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.3720 S13: -0.0815 REMARK 3 S21: 0.2821 S22: -0.0647 S23: -0.1238 REMARK 3 S31: 0.1731 S32: -0.0838 S33: -0.0186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4228 -22.2873 13.0177 REMARK 3 T TENSOR REMARK 3 T11: 0.4359 T22: 0.2520 REMARK 3 T33: 0.2788 T12: -0.1216 REMARK 3 T13: 0.0544 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 5.0160 L22: 0.5911 REMARK 3 L33: 2.9386 L12: -1.3504 REMARK 3 L13: 1.1150 L23: 0.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.4265 S13: 0.2410 REMARK 3 S21: -0.0613 S22: 0.0846 S23: -0.2485 REMARK 3 S31: -0.0735 S32: 0.1995 S33: -0.0473 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0287 -26.2296 18.3481 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.4304 REMARK 3 T33: 0.2567 T12: -0.1636 REMARK 3 T13: 0.0039 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.2286 L22: 2.7784 REMARK 3 L33: 4.0761 L12: 0.7401 REMARK 3 L13: 0.1805 L23: -0.6904 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: -0.1533 S13: -0.1481 REMARK 3 S21: 0.2174 S22: -0.0069 S23: 0.1404 REMARK 3 S31: 0.2548 S32: -0.7600 S33: -0.0908 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1015 2.0683 4.0842 REMARK 3 T TENSOR REMARK 3 T11: 0.8155 T22: 0.9376 REMARK 3 T33: 0.3269 T12: -0.4416 REMARK 3 T13: 0.0302 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.2599 L22: 5.3343 REMARK 3 L33: 0.7975 L12: -0.1753 REMARK 3 L13: -1.5526 L23: -1.0761 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 0.6423 S13: -0.1073 REMARK 3 S21: -0.8427 S22: -0.0540 S23: -0.1081 REMARK 3 S31: -0.7080 S32: 0.4952 S33: -0.0539 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4534 -5.1246 -1.6171 REMARK 3 T TENSOR REMARK 3 T11: 1.3632 T22: 1.2122 REMARK 3 T33: 0.5643 T12: -0.3193 REMARK 3 T13: -0.1624 T23: -0.1190 REMARK 3 L TENSOR REMARK 3 L11: 0.7510 L22: 8.0136 REMARK 3 L33: 2.3364 L12: -1.9519 REMARK 3 L13: -0.9474 L23: 2.2281 REMARK 3 S TENSOR REMARK 3 S11: 0.3549 S12: 0.2902 S13: -0.1532 REMARK 3 S21: -1.9145 S22: 0.0751 S23: 0.6567 REMARK 3 S31: 0.3578 S32: -0.4147 S33: -0.3516 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2066 -5.4869 6.0814 REMARK 3 T TENSOR REMARK 3 T11: 0.6276 T22: 0.8138 REMARK 3 T33: 0.4787 T12: -0.3467 REMARK 3 T13: -0.0086 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 2.0603 L22: 7.2427 REMARK 3 L33: 2.2921 L12: -2.0870 REMARK 3 L13: -1.6257 L23: -0.4660 REMARK 3 S TENSOR REMARK 3 S11: -0.2436 S12: 1.1820 S13: -0.5589 REMARK 3 S21: -1.0138 S22: 0.1502 S23: 0.0881 REMARK 3 S31: -0.1940 S32: 0.1260 S33: 0.1302 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1547 -4.5003 21.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.4759 T22: 0.5622 REMARK 3 T33: 0.3922 T12: -0.2708 REMARK 3 T13: -0.0788 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.8313 L22: 3.7393 REMARK 3 L33: 1.1477 L12: 0.3708 REMARK 3 L13: -0.2459 L23: 0.1184 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0704 S13: -0.2174 REMARK 3 S21: 0.1945 S22: -0.0178 S23: -0.3924 REMARK 3 S31: -0.3499 S32: 0.4108 S33: 0.0138 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 196 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8651 11.7854 21.4597 REMARK 3 T TENSOR REMARK 3 T11: 0.7105 T22: 0.4582 REMARK 3 T33: 0.3953 T12: -0.2519 REMARK 3 T13: 0.0044 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.6407 L22: 6.5286 REMARK 3 L33: 2.6284 L12: -0.4970 REMARK 3 L13: -0.5124 L23: -1.5852 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.0370 S13: 0.4592 REMARK 3 S21: 0.3135 S22: -0.0968 S23: 0.6909 REMARK 3 S31: -0.5177 S32: -0.0015 S33: -0.0256 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0462 17.8461 10.9777 REMARK 3 T TENSOR REMARK 3 T11: 0.9454 T22: 0.7391 REMARK 3 T33: 0.4371 T12: -0.3695 REMARK 3 T13: -0.1257 T23: 0.1111 REMARK 3 L TENSOR REMARK 3 L11: 2.8442 L22: 3.7500 REMARK 3 L33: 1.2272 L12: 0.7809 REMARK 3 L13: -0.7645 L23: -0.2750 REMARK 3 S TENSOR REMARK 3 S11: -0.3307 S12: 0.7280 S13: 0.2894 REMARK 3 S21: -0.5115 S22: 0.1068 S23: 0.4165 REMARK 3 S31: -0.7334 S32: 0.0513 S33: 0.1595 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2812 12.4490 20.2096 REMARK 3 T TENSOR REMARK 3 T11: 1.2222 T22: 1.0647 REMARK 3 T33: 0.1487 T12: -0.6665 REMARK 3 T13: -0.2851 T23: 0.1230 REMARK 3 L TENSOR REMARK 3 L11: 1.1117 L22: 2.7452 REMARK 3 L33: 2.0088 L12: 0.8539 REMARK 3 L13: -0.8089 L23: 1.1331 REMARK 3 S TENSOR REMARK 3 S11: 0.3325 S12: -0.3467 S13: -0.3009 REMARK 3 S21: 0.7493 S22: 0.1032 S23: -0.6831 REMARK 3 S31: 0.2087 S32: 0.9550 S33: -0.2760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 37LZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-26. REMARK 100 THE DEPOSITION ID IS D_1000310173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 33.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 20% JEFFAMINE PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.52900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.69300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.52900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.69300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 HIS A 41 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LEU B 3 CG CD1 CD2 REMARK 470 TYR B 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 MET B 8 CG SD CE REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 MET B 38 CG SD CE REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 ILE B 44 CG1 CG2 CD1 REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 SER B 261 OG REMARK 470 ASP B 262 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 102 -55.94 64.52 REMARK 500 HIS A 226 -64.89 77.46 REMARK 500 ASP A 283 -76.88 69.48 REMARK 500 PRO B 53 111.66 -38.81 REMARK 500 ILE B 102 -45.98 71.29 REMARK 500 HIS B 226 -70.39 74.65 REMARK 500 ALA B 259 -7.06 71.91 REMARK 500 ASP B 283 -77.38 68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 105.7 REMARK 620 3 HIS A 202 NE2 84.1 103.0 REMARK 620 4 ASP A 283 OD1 78.1 92.6 159.0 REMARK 620 5 DCF A 402 O8 118.2 132.8 97.9 81.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HIS B 17 NE2 98.6 REMARK 620 3 HIS B 202 NE2 83.8 100.4 REMARK 620 4 ASP B 283 OD1 81.0 83.2 164.8 REMARK 620 5 DCF B 401 O8 125.0 135.4 93.5 94.1 REMARK 620 N 1 2 3 4 DBREF 37LZ A -1 326 PDB 37LZ 37LZ -1 326 DBREF 37LZ B -1 326 PDB 37LZ 37LZ -1 326 SEQRES 1 A 328 SER HIS MET ASP LEU TYR GLU ALA ARG MET MET ASP LYS SEQRES 2 A 328 GLY GLU LEU HIS VAL HIS LEU ASN GLY LEU VAL SER THR SEQRES 3 A 328 GLN VAL ILE ARG GLY VAL LEU GLU LYS ASN ILE ILE GLU SEQRES 4 A 328 MET PRO GLU HIS PHE ASN ILE ASP THR ASP LEU ASN VAL SEQRES 5 A 328 THR HIS PRO ALA ARG SER LEU VAL ASP TYR LEU LYS PRO SEQRES 6 A 328 TRP GLN PHE LEU ARG LEU ILE PRO ALA SER ARG PHE ASP SEQRES 7 A 328 LEU SER ILE MET ILE GLU SER ALA PHE SER ASN LEU ILE SEQRES 8 A 328 ALA GLU ASN ILE LYS PHE VAL GLU LEU ARG ASN SER ILE SEQRES 9 A 328 ILE TYR ILE ALA LEU LEU ASN ASN ILE SER VAL SER GLU SEQRES 10 A 328 ALA LEU LYS TRP VAL LEU ASP ASP ILE ASP PHE PHE SER SEQRES 11 A 328 LYS LYS PHE ASN ILE GLN ALA GLY LEU ILE LEU THR ILE SEQRES 12 A 328 THR ARG GLY GLU TYR ALA PRO GLU HIS LEU ARG SER LEU SEQRES 13 A 328 LEU GLY ALA TYR LYS SER LEU GLY CYS PRO ALA GLY VAL SEQRES 14 A 328 ILE GLY LEU ASP LEU ALA GLY ASN GLU ASP ILE THR PRO SEQRES 15 A 328 PRO PRO GLU THR ALA SER LEU PHE ARG SER ALA LYS ASP SEQRES 16 A 328 LYS TYR GLY LEU GLY ILE THR ILE HIS ALA GLY GLU THR SEQRES 17 A 328 GLY ASN ALA ASP ASN ILE ARG ASN ALA ILE ILE SER TYR SEQRES 18 A 328 GLY ALA ASP ARG ILE GLY HIS GLY THR ALA VAL ILE ARG SEQRES 19 A 328 SER PRO GLU ILE MET ASP LEU ILE ARG GLU LEU ASP ILE SEQRES 20 A 328 CYS ILE GLU VAL CYS PRO ILE SER ASN ARG LEU THR GLY SEQRES 21 A 328 ALA VAL SER ASP VAL ASP PRO HIS PRO VAL GLY GLU MET SEQRES 22 A 328 ILE ASN HIS ASN ILE PRO PHE VAL ILE CYS SER ASP ASN SEQRES 23 A 328 PRO ALA ILE HIS ARG SER SER LEU SER GLU ASP TYR VAL SEQRES 24 A 328 ALA PHE MET GLN GLU THR LYS ASN PHE ILE VAL MET ASP SEQRES 25 A 328 ASN MET TYR GLU THR GLN LYS ARG TYR SER PHE LEU LYS SEQRES 26 A 328 GLY VAL LYS SEQRES 1 B 328 SER HIS MET ASP LEU TYR GLU ALA ARG MET MET ASP LYS SEQRES 2 B 328 GLY GLU LEU HIS VAL HIS LEU ASN GLY LEU VAL SER THR SEQRES 3 B 328 GLN VAL ILE ARG GLY VAL LEU GLU LYS ASN ILE ILE GLU SEQRES 4 B 328 MET PRO GLU HIS PHE ASN ILE ASP THR ASP LEU ASN VAL SEQRES 5 B 328 THR HIS PRO ALA ARG SER LEU VAL ASP TYR LEU LYS PRO SEQRES 6 B 328 TRP GLN PHE LEU ARG LEU ILE PRO ALA SER ARG PHE ASP SEQRES 7 B 328 LEU SER ILE MET ILE GLU SER ALA PHE SER ASN LEU ILE SEQRES 8 B 328 ALA GLU ASN ILE LYS PHE VAL GLU LEU ARG ASN SER ILE SEQRES 9 B 328 ILE TYR ILE ALA LEU LEU ASN ASN ILE SER VAL SER GLU SEQRES 10 B 328 ALA LEU LYS TRP VAL LEU ASP ASP ILE ASP PHE PHE SER SEQRES 11 B 328 LYS LYS PHE ASN ILE GLN ALA GLY LEU ILE LEU THR ILE SEQRES 12 B 328 THR ARG GLY GLU TYR ALA PRO GLU HIS LEU ARG SER LEU SEQRES 13 B 328 LEU GLY ALA TYR LYS SER LEU GLY CYS PRO ALA GLY VAL SEQRES 14 B 328 ILE GLY LEU ASP LEU ALA GLY ASN GLU ASP ILE THR PRO SEQRES 15 B 328 PRO PRO GLU THR ALA SER LEU PHE ARG SER ALA LYS ASP SEQRES 16 B 328 LYS TYR GLY LEU GLY ILE THR ILE HIS ALA GLY GLU THR SEQRES 17 B 328 GLY ASN ALA ASP ASN ILE ARG ASN ALA ILE ILE SER TYR SEQRES 18 B 328 GLY ALA ASP ARG ILE GLY HIS GLY THR ALA VAL ILE ARG SEQRES 19 B 328 SER PRO GLU ILE MET ASP LEU ILE ARG GLU LEU ASP ILE SEQRES 20 B 328 CYS ILE GLU VAL CYS PRO ILE SER ASN ARG LEU THR GLY SEQRES 21 B 328 ALA VAL SER ASP VAL ASP PRO HIS PRO VAL GLY GLU MET SEQRES 22 B 328 ILE ASN HIS ASN ILE PRO PHE VAL ILE CYS SER ASP ASN SEQRES 23 B 328 PRO ALA ILE HIS ARG SER SER LEU SER GLU ASP TYR VAL SEQRES 24 B 328 ALA PHE MET GLN GLU THR LYS ASN PHE ILE VAL MET ASP SEQRES 25 B 328 ASN MET TYR GLU THR GLN LYS ARG TYR SER PHE LEU LYS SEQRES 26 B 328 GLY VAL LYS HET EDO A 401 4 HET DCF A 402 19 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET ZN A 411 1 HET DCF B 401 19 HET EDO B 402 4 HET EDO B 403 4 HET ZN B 404 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM DCF 2'-DEOXYCOFORMYCIN HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 11(C2 H6 O2) FORMUL 4 DCF 2(C11 H16 N4 O4) FORMUL 13 ZN 2(ZN 2+) FORMUL 18 HOH *117(H2 O) HELIX 1 AA1 ASP A 2 MET A 9 1 8 HELIX 2 AA2 SER A 23 LYS A 33 1 11 HELIX 3 AA3 SER A 56 LYS A 62 1 7 HELIX 4 AA4 PRO A 63 ARG A 68 1 6 HELIX 5 AA5 SER A 73 GLU A 91 1 19 HELIX 6 AA6 ILE A 102 ASN A 110 1 9 HELIX 7 AA7 SER A 112 ASN A 132 1 21 HELIX 8 AA8 TYR A 146 LEU A 161 1 16 HELIX 9 AA9 PRO A 181 GLY A 196 1 16 HELIX 10 AB1 ALA A 209 GLY A 220 1 12 HELIX 11 AB2 THR A 228 ARG A 232 5 5 HELIX 12 AB3 SER A 233 ASP A 244 1 12 HELIX 13 AB4 CYS A 250 THR A 257 1 8 HELIX 14 AB5 PRO A 267 HIS A 274 1 8 HELIX 15 AB6 ASN A 284 ARG A 289 1 6 HELIX 16 AB7 SER A 291 LYS A 304 1 14 HELIX 17 AB8 ASN A 305 SER A 320 1 16 HELIX 18 AB9 ASP B 2 MET B 9 1 8 HELIX 19 AC1 SER B 23 GLU B 32 1 10 HELIX 20 AC2 SER B 56 LYS B 62 1 7 HELIX 21 AC3 PRO B 63 ARG B 68 1 6 HELIX 22 AC4 SER B 73 ALA B 90 1 18 HELIX 23 AC5 ILE B 102 ASN B 110 1 9 HELIX 24 AC6 SER B 112 ASN B 132 1 21 HELIX 25 AC7 TYR B 146 LEU B 161 1 16 HELIX 26 AC8 PRO B 182 GLY B 196 1 15 HELIX 27 AC9 ALA B 209 TYR B 219 1 11 HELIX 28 AD1 THR B 228 ARG B 232 5 5 HELIX 29 AD2 SER B 233 ASP B 244 1 12 HELIX 30 AD3 CYS B 250 GLY B 258 1 9 HELIX 31 AD4 PRO B 267 HIS B 274 1 8 HELIX 32 AD5 ASN B 284 ARG B 289 1 6 HELIX 33 AD6 SER B 291 LYS B 304 1 14 HELIX 34 AD7 ASN B 305 ASN B 311 1 7 HELIX 35 AD8 ASN B 311 SER B 320 1 10 SHEET 1 AA1 8 LYS A 11 HIS A 17 0 SHEET 2 AA1 8 ILE A 93 ASN A 100 1 O PHE A 95 N GLU A 13 SHEET 3 AA1 8 GLN A 134 THR A 142 1 O ILE A 138 N LEU A 98 SHEET 4 AA1 8 VAL A 167 ALA A 173 1 O ASP A 171 N ILE A 141 SHEET 5 AA1 8 GLY A 198 ALA A 203 1 O HIS A 202 N LEU A 172 SHEET 6 AA1 8 ARG A 223 HIS A 226 1 O GLY A 225 N ILE A 201 SHEET 7 AA1 8 CYS A 246 VAL A 249 1 O GLU A 248 N ILE A 224 SHEET 8 AA1 8 PHE A 278 ILE A 280 1 O VAL A 279 N VAL A 249 SHEET 1 AA2 8 LYS B 11 HIS B 17 0 SHEET 2 AA2 8 ILE B 93 ASN B 100 1 O LYS B 94 N LYS B 11 SHEET 3 AA2 8 GLN B 134 THR B 142 1 O ILE B 138 N LEU B 98 SHEET 4 AA2 8 VAL B 167 ALA B 173 1 O ASP B 171 N ILE B 141 SHEET 5 AA2 8 GLY B 198 ALA B 203 1 O GLY B 198 N LEU B 170 SHEET 6 AA2 8 ARG B 223 HIS B 226 1 O GLY B 225 N ILE B 201 SHEET 7 AA2 8 CYS B 246 VAL B 249 1 O GLU B 248 N ILE B 224 SHEET 8 AA2 8 PHE B 278 ILE B 280 1 O VAL B 279 N VAL B 249 LINK NE2 HIS A 15 ZN ZN A 411 1555 1555 2.29 LINK NE2 HIS A 17 ZN ZN A 411 1555 1555 2.29 LINK NE2 HIS A 202 ZN ZN A 411 1555 1555 2.30 LINK OD1 ASP A 283 ZN ZN A 411 1555 1555 2.47 LINK O8 DCF A 402 ZN ZN A 411 1555 1555 1.97 LINK NE2 HIS B 15 ZN ZN B 404 1555 1555 2.30 LINK NE2 HIS B 17 ZN ZN B 404 1555 1555 2.30 LINK NE2 HIS B 202 ZN ZN B 404 1555 1555 2.30 LINK OD1 ASP B 283 ZN ZN B 404 1555 1555 2.32 LINK O8 DCF B 401 ZN ZN B 404 1555 1555 2.02 CISPEP 1 ILE A 70 PRO A 71 0 0.85 CISPEP 2 ILE B 70 PRO B 71 0 -2.00 CRYST1 105.058 127.386 79.542 90.00 90.16 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009519 0.000000 0.000027 0.00000 SCALE2 0.000000 0.007850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012572 0.00000 CONECT 130 5122 CONECT 147 5122 CONECT 1595 5122 CONECT 2199 5122 CONECT 2654 5150 CONECT 2671 5150 CONECT 4105 5150 CONECT 4705 5150 CONECT 5067 5068 5069 CONECT 5068 5067 CONECT 5069 5067 5070 CONECT 5070 5069 CONECT 5071 5072 5074 CONECT 5072 5071 5073 CONECT 5073 5072 5075 5089 CONECT 5074 5071 5075 5080 CONECT 5075 5073 5074 5076 CONECT 5076 5075 5077 CONECT 5077 5076 5078 CONECT 5078 5077 5079 CONECT 5079 5078 5080 CONECT 5080 5074 5079 5081 CONECT 5081 5080 5122 CONECT 5082 5083 5089 CONECT 5083 5082 5084 5087 CONECT 5084 5083 CONECT 5085 5086 CONECT 5086 5085 5087 CONECT 5087 5083 5086 5088 CONECT 5088 5087 5089 CONECT 5089 5073 5082 5088 CONECT 5090 5091 5092 CONECT 5091 5090 CONECT 5092 5090 5093 CONECT 5093 5092 CONECT 5094 5095 5096 CONECT 5095 5094 CONECT 5096 5094 5097 CONECT 5097 5096 CONECT 5098 5099 5100 CONECT 5099 5098 CONECT 5100 5098 5101 CONECT 5101 5100 CONECT 5102 5103 5104 CONECT 5103 5102 CONECT 5104 5102 5105 CONECT 5105 5104 CONECT 5106 5107 5108 CONECT 5107 5106 CONECT 5108 5106 5109 CONECT 5109 5108 CONECT 5110 5111 5112 CONECT 5111 5110 CONECT 5112 5110 5113 CONECT 5113 5112 CONECT 5114 5115 5116 CONECT 5115 5114 CONECT 5116 5114 5117 CONECT 5117 5116 CONECT 5118 5119 5120 CONECT 5119 5118 CONECT 5120 5118 5121 CONECT 5121 5120 CONECT 5122 130 147 1595 2199 CONECT 5122 5081 CONECT 5123 5124 5126 CONECT 5124 5123 5125 CONECT 5125 5124 5127 5141 CONECT 5126 5123 5127 5132 CONECT 5127 5125 5126 5128 CONECT 5128 5127 5129 CONECT 5129 5128 5130 CONECT 5130 5129 5131 CONECT 5131 5130 5132 CONECT 5132 5126 5131 5133 CONECT 5133 5132 5150 CONECT 5134 5135 5141 CONECT 5135 5134 5136 5139 CONECT 5136 5135 CONECT 5137 5138 CONECT 5138 5137 5139 CONECT 5139 5135 5138 5140 CONECT 5140 5139 5141 CONECT 5141 5125 5134 5140 CONECT 5142 5143 5144 CONECT 5143 5142 CONECT 5144 5142 5145 CONECT 5145 5144 CONECT 5146 5147 5148 CONECT 5147 5146 CONECT 5148 5146 5149 CONECT 5149 5148 CONECT 5150 2654 2671 4105 4705 CONECT 5150 5133 MASTER 442 0 15 35 16 0 0 6 5253 2 94 52 END