data_388D # _entry.id 388D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 388D pdb_0000388d 10.2210/pdb388d/pdb RCSB BDLB84 ? ? WWPDB D_1000178852 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-05 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_conn_type.id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 388D _pdbx_database_status.recvd_initial_deposition_date 1998-04-20 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Berger, I.' 1 'Tereshko, V.' 2 'Ikeda, H.' 3 'Marquez, V.E.' 4 'Egli, M.' 5 # _citation.id primary _citation.title ;Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 2473 _citation.page_last 2480 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9580702 _citation.pdbx_database_id_DOI 10.1093/nar/26.10.2473 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Berger, I.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Ikeda, H.' 3 ? primary 'Marquez, V.E.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*(TAF)P*CP*GP*CP*G)-3') ; 3699.374 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TAF)(TAF)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 TAF n 1 8 TAF n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 TAF 7 7 7 TAF +T A . n A 1 8 TAF 8 8 8 TAF +T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 TAF 7 19 19 TAF +T B . n B 1 8 TAF 8 20 20 TAF +T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MO6 A . D 3 HOH 1 102 102 HOH HOH A . D 3 HOH 2 103 103 HOH HOH A . D 3 HOH 3 105 105 HOH HOH A . D 3 HOH 4 108 108 HOH HOH A . D 3 HOH 5 109 109 HOH HOH A . D 3 HOH 6 111 111 HOH HOH A . D 3 HOH 7 113 113 HOH HOH A . D 3 HOH 8 114 114 HOH HOH A . D 3 HOH 9 115 115 HOH HOH A . D 3 HOH 10 116 116 HOH HOH A . D 3 HOH 11 117 117 HOH HOH A . D 3 HOH 12 119 119 HOH HOH A . D 3 HOH 13 120 120 HOH HOH A . D 3 HOH 14 127 127 HOH HOH A . D 3 HOH 15 131 131 HOH HOH A . D 3 HOH 16 132 132 HOH HOH A . D 3 HOH 17 135 135 HOH HOH A . D 3 HOH 18 136 136 HOH HOH A . D 3 HOH 19 137 137 HOH HOH A . D 3 HOH 20 138 138 HOH HOH A . D 3 HOH 21 139 139 HOH HOH A . D 3 HOH 22 140 140 HOH HOH A . D 3 HOH 23 141 141 HOH HOH A . D 3 HOH 24 142 142 HOH HOH A . D 3 HOH 25 147 147 HOH HOH A . D 3 HOH 26 148 148 HOH HOH A . D 3 HOH 27 151 151 HOH HOH A . D 3 HOH 28 152 152 HOH HOH A . D 3 HOH 29 153 153 HOH HOH A . D 3 HOH 30 155 155 HOH HOH A . D 3 HOH 31 161 161 HOH HOH A . D 3 HOH 32 162 162 HOH HOH A . D 3 HOH 33 164 164 HOH HOH A . D 3 HOH 34 167 167 HOH HOH A . D 3 HOH 35 168 168 HOH HOH A . D 3 HOH 36 174 174 HOH HOH A . D 3 HOH 37 177 177 HOH HOH A . D 3 HOH 38 178 178 HOH HOH A . D 3 HOH 39 179 179 HOH HOH A . D 3 HOH 40 180 180 HOH HOH A . D 3 HOH 41 181 181 HOH HOH A . D 3 HOH 42 182 182 HOH HOH A . D 3 HOH 43 183 183 HOH HOH A . D 3 HOH 44 184 184 HOH HOH A . D 3 HOH 45 186 186 HOH HOH A . D 3 HOH 46 189 189 HOH HOH A . D 3 HOH 47 190 190 HOH HOH A . D 3 HOH 48 191 191 HOH HOH A . D 3 HOH 49 192 192 HOH HOH A . D 3 HOH 50 193 193 HOH HOH A . D 3 HOH 51 194 194 HOH HOH A . D 3 HOH 52 195 195 HOH HOH A . D 3 HOH 53 196 196 HOH HOH A . D 3 HOH 54 199 199 HOH HOH A . D 3 HOH 55 201 201 HOH HOH A . D 3 HOH 56 202 202 HOH HOH A . D 3 HOH 57 203 203 HOH HOH A . D 3 HOH 58 204 204 HOH HOH A . D 3 HOH 59 205 205 HOH HOH A . D 3 HOH 60 206 206 HOH HOH A . D 3 HOH 61 207 207 HOH HOH A . D 3 HOH 62 209 209 HOH HOH A . D 3 HOH 63 210 210 HOH HOH A . D 3 HOH 64 211 211 HOH HOH A . D 3 HOH 65 212 212 HOH HOH A . D 3 HOH 66 213 213 HOH HOH A . D 3 HOH 67 214 214 HOH HOH A . D 3 HOH 68 215 215 HOH HOH A . D 3 HOH 69 216 216 HOH HOH A . D 3 HOH 70 217 217 HOH HOH A . D 3 HOH 71 218 218 HOH HOH A . D 3 HOH 72 220 220 HOH HOH A . D 3 HOH 73 223 223 HOH HOH A . D 3 HOH 74 229 229 HOH HOH A . D 3 HOH 75 230 230 HOH HOH A . D 3 HOH 76 231 231 HOH HOH A . D 3 HOH 77 232 232 HOH HOH A . D 3 HOH 78 233 233 HOH HOH A . D 3 HOH 79 234 234 HOH HOH A . D 3 HOH 80 237 237 HOH HOH A . D 3 HOH 81 243 243 HOH HOH A . D 3 HOH 82 244 244 HOH HOH A . D 3 HOH 83 245 245 HOH HOH A . D 3 HOH 84 246 246 HOH HOH A . D 3 HOH 85 247 247 HOH HOH A . D 3 HOH 86 248 248 HOH HOH A . D 3 HOH 87 249 249 HOH HOH A . D 3 HOH 88 250 250 HOH HOH A . D 3 HOH 89 251 251 HOH HOH A . D 3 HOH 90 254 254 HOH HOH A . D 3 HOH 91 256 256 HOH HOH A . D 3 HOH 92 257 257 HOH HOH A . D 3 HOH 93 261 261 HOH HOH A . D 3 HOH 94 262 262 HOH HOH A . D 3 HOH 95 266 266 HOH HOH A . D 3 HOH 96 269 269 HOH HOH A . D 3 HOH 97 270 270 HOH HOH A . D 3 HOH 98 271 271 HOH HOH A . D 3 HOH 99 273 25 HOH MO6 A . D 3 HOH 100 274 25 HOH MO6 A . D 3 HOH 101 275 25 HOH MO6 A . D 3 HOH 102 276 25 HOH MO6 A . E 3 HOH 1 101 101 HOH HOH B . E 3 HOH 2 104 104 HOH HOH B . E 3 HOH 3 106 106 HOH HOH B . E 3 HOH 4 107 107 HOH HOH B . E 3 HOH 5 110 110 HOH HOH B . E 3 HOH 6 112 112 HOH HOH B . E 3 HOH 7 118 118 HOH HOH B . E 3 HOH 8 121 121 HOH HOH B . E 3 HOH 9 122 122 HOH HOH B . E 3 HOH 10 123 123 HOH HOH B . E 3 HOH 11 124 124 HOH HOH B . E 3 HOH 12 125 125 HOH HOH B . E 3 HOH 13 126 126 HOH HOH B . E 3 HOH 14 128 128 HOH HOH B . E 3 HOH 15 129 129 HOH HOH B . E 3 HOH 16 130 130 HOH HOH B . E 3 HOH 17 133 133 HOH HOH B . E 3 HOH 18 134 134 HOH HOH B . E 3 HOH 19 143 143 HOH HOH B . E 3 HOH 20 144 144 HOH HOH B . E 3 HOH 21 145 145 HOH HOH B . E 3 HOH 22 146 146 HOH HOH B . E 3 HOH 23 149 149 HOH HOH B . E 3 HOH 24 150 150 HOH HOH B . E 3 HOH 25 154 154 HOH HOH B . E 3 HOH 26 156 156 HOH HOH B . E 3 HOH 27 157 157 HOH HOH B . E 3 HOH 28 158 158 HOH HOH B . E 3 HOH 29 159 159 HOH HOH B . E 3 HOH 30 160 160 HOH HOH B . E 3 HOH 31 163 163 HOH HOH B . E 3 HOH 32 165 165 HOH HOH B . E 3 HOH 33 166 166 HOH HOH B . E 3 HOH 34 169 169 HOH HOH B . E 3 HOH 35 170 170 HOH HOH B . E 3 HOH 36 171 171 HOH HOH B . E 3 HOH 37 172 172 HOH HOH B . E 3 HOH 38 173 173 HOH HOH B . E 3 HOH 39 175 175 HOH HOH B . E 3 HOH 40 176 176 HOH HOH B . E 3 HOH 41 185 185 HOH HOH B . E 3 HOH 42 187 187 HOH HOH B . E 3 HOH 43 188 188 HOH HOH B . E 3 HOH 44 197 197 HOH HOH B . E 3 HOH 45 198 198 HOH HOH B . E 3 HOH 46 200 200 HOH HOH B . E 3 HOH 47 208 208 HOH HOH B . E 3 HOH 48 219 219 HOH HOH B . E 3 HOH 49 221 221 HOH HOH B . E 3 HOH 50 222 222 HOH HOH B . E 3 HOH 51 224 224 HOH HOH B . E 3 HOH 52 225 225 HOH HOH B . E 3 HOH 53 226 226 HOH HOH B . E 3 HOH 54 227 227 HOH HOH B . E 3 HOH 55 228 228 HOH HOH B . E 3 HOH 56 235 235 HOH HOH B . E 3 HOH 57 236 236 HOH HOH B . E 3 HOH 58 238 238 HOH HOH B . E 3 HOH 59 239 239 HOH HOH B . E 3 HOH 60 240 240 HOH HOH B . E 3 HOH 61 241 241 HOH HOH B . E 3 HOH 62 242 242 HOH HOH B . E 3 HOH 63 252 252 HOH HOH B . E 3 HOH 64 253 253 HOH HOH B . E 3 HOH 65 255 255 HOH HOH B . E 3 HOH 66 258 258 HOH HOH B . E 3 HOH 67 259 259 HOH HOH B . E 3 HOH 68 260 260 HOH HOH B . E 3 HOH 69 263 263 HOH HOH B . E 3 HOH 70 264 264 HOH HOH B . E 3 HOH 71 265 265 HOH HOH B . E 3 HOH 72 267 267 HOH HOH B . E 3 HOH 73 268 268 HOH HOH B . E 3 HOH 74 272 25 HOH MO6 B . E 3 HOH 75 277 25 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.851 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 388D _cell.length_a 24.930 _cell.length_b 39.820 _cell.length_c 65.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 388D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 388D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.12 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 'SPERMINE TETRACLORIDE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 2-METHYL-2,4-PENTANEDIOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1997-02-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 388D _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 8010 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.500 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 388D _refine.ls_number_reflns_obs 7894 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.550 _refine.ls_percent_reflns_obs 79.700 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 668 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.88 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 388D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 388D _struct.title ;CRYSTAL STRUCTURE OF B-DNA WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINES: IMPLICATIONS OF CONFORMATIONAL PREORGANIZATION FOR DUPLEX STABILITY ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 388D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 388D _struct_ref.pdbx_db_accession 388D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 388D A 1 ? 12 ? 388D 1 ? 12 ? 1 12 2 1 388D B 1 ? 12 ? 388D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TAF 7 P ? ? A DA 6 A TAF 7 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale one ? A TAF 7 "O3'" ? ? ? 1_555 A TAF 8 P ? ? A TAF 7 A TAF 8 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale3 covale one ? A TAF 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A TAF 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale4 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TAF 7 P ? ? B DA 18 B TAF 19 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale5 covale one ? B TAF 7 "O3'" ? ? ? 1_555 B TAF 8 P ? ? B TAF 19 B TAF 20 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale6 covale one ? B TAF 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B TAF 20 B DC 21 1_555 ? ? ? ? ? ? ? 1.611 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 273 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 274 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 275 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 25 A HOH 276 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 B HOH 272 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 B HOH 277 1_555 ? ? ? ? ? ? ? 2.115 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B TAF 8 N3 ? ? A DA 5 B TAF 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B TAF 8 O4 ? ? A DA 5 B TAF 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TAF 7 N3 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TAF 7 O4 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TAF 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TAF 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A TAF 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A TAF 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A TAF 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A TAF 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 273 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 274 ? 1_555 89.6 ? 2 O ? D HOH . ? A HOH 273 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 275 ? 1_555 90.2 ? 3 O ? D HOH . ? A HOH 274 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 275 ? 1_555 89.8 ? 4 O ? D HOH . ? A HOH 273 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 276 ? 1_555 90.2 ? 5 O ? D HOH . ? A HOH 274 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 276 ? 1_555 176.2 ? 6 O ? D HOH . ? A HOH 275 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? D HOH . ? A HOH 276 ? 1_555 93.9 ? 7 O ? D HOH . ? A HOH 273 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 272 ? 1_555 93.6 ? 8 O ? D HOH . ? A HOH 274 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 272 ? 1_555 85.2 ? 9 O ? D HOH . ? A HOH 275 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 272 ? 1_555 173.7 ? 10 O ? D HOH . ? A HOH 276 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 272 ? 1_555 91.1 ? 11 O ? D HOH . ? A HOH 273 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 277 ? 1_555 175.7 ? 12 O ? D HOH . ? A HOH 274 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 277 ? 1_555 87.0 ? 13 O ? D HOH . ? A HOH 275 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 277 ? 1_555 87.2 ? 14 O ? D HOH . ? A HOH 276 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 277 ? 1_555 93.3 ? 15 O ? E HOH . ? B HOH 272 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? B HOH 277 ? 1_555 88.7 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 25 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 273 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 274 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 275 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 276 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 272 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 277 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TAF 7 A TAF 7 ? DT ? 2 A TAF 8 A TAF 8 ? DT ? 3 B TAF 7 B TAF 19 ? DT ? 4 B TAF 8 B TAF 20 ? DT ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 N 0 A HOH 189 ? D HOH ? 2 1 N 0 A HOH 195 ? D HOH ? 3 1 N 0 A HOH 209 ? D HOH ? 4 1 N 0 A HOH 213 ? D HOH ? 5 1 N 0 A HOH 245 ? D HOH ? 6 1 N 0 A HOH 251 ? D HOH ? 7 1 N 0 A HOH 257 ? D HOH ? 8 1 N 0 A HOH 266 ? D HOH ? 9 1 N 0 A HOH 269 ? D HOH ? 10 1 N 0 A HOH 270 ? D HOH ? 11 1 N 0 A HOH 271 ? D HOH ? 12 1 N 0 B HOH 130 ? E HOH ? 13 1 N 0 B HOH 144 ? E HOH ? 14 1 N 0 B HOH 200 ? E HOH ? 15 1 N 0 B HOH 222 ? E HOH ? 16 1 N 0 B HOH 239 ? E HOH ? 17 1 N 0 B HOH 264 ? E HOH ? 18 1 N 0 B HOH 265 ? E HOH ? 19 1 N 0 B HOH 267 ? E HOH ? 20 1 N 0 B HOH 268 ? E HOH ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 TAF P P N N 112 TAF OP1 O N N 113 TAF OP2 O N N 114 TAF OP3 O N N 115 TAF "O5'" O N N 116 TAF N1 N N N 117 TAF C6 C N N 118 TAF C2 C N N 119 TAF O2 O N N 120 TAF N3 N N N 121 TAF C4 C N N 122 TAF O4 O N N 123 TAF C5 C N N 124 TAF C5M C N N 125 TAF "F2'" F N N 126 TAF "C2'" C N S 127 TAF "C5'" C N N 128 TAF "C4'" C N R 129 TAF "O4'" O N N 130 TAF "C1'" C N R 131 TAF "C3'" C N R 132 TAF "O3'" O N N 133 TAF HOP1 H N N 134 TAF HOP2 H N N 135 TAF H6 H N N 136 TAF H3 H N N 137 TAF H71 H N N 138 TAF H72 H N N 139 TAF H73 H N N 140 TAF "H2'" H N N 141 TAF "H5'" H N N 142 TAF "H5''" H N N 143 TAF "H4'" H N N 144 TAF "H1'" H N N 145 TAF "H3'" H N N 146 TAF "HO'3" H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 TAF P OP1 sing N N 115 TAF P OP2 sing N N 116 TAF P OP3 doub N N 117 TAF P "O5'" sing N N 118 TAF OP1 HOP1 sing N N 119 TAF OP2 HOP2 sing N N 120 TAF "O5'" "C5'" sing N N 121 TAF N1 C6 sing N N 122 TAF N1 C2 sing N N 123 TAF N1 "C1'" sing N N 124 TAF C6 C5 doub N N 125 TAF C6 H6 sing N N 126 TAF C2 O2 doub N N 127 TAF C2 N3 sing N N 128 TAF N3 C4 sing N N 129 TAF N3 H3 sing N N 130 TAF C4 O4 doub N N 131 TAF C4 C5 sing N N 132 TAF C5 C5M sing N N 133 TAF C5M H71 sing N N 134 TAF C5M H72 sing N N 135 TAF C5M H73 sing N N 136 TAF "F2'" "C2'" sing N N 137 TAF "C2'" "C1'" sing N N 138 TAF "C2'" "C3'" sing N N 139 TAF "C2'" "H2'" sing N N 140 TAF "C5'" "C4'" sing N N 141 TAF "C5'" "H5'" sing N N 142 TAF "C5'" "H5''" sing N N 143 TAF "C4'" "O4'" sing N N 144 TAF "C4'" "C3'" sing N N 145 TAF "C4'" "H4'" sing N N 146 TAF "O4'" "C1'" sing N N 147 TAF "C1'" "H1'" sing N N 148 TAF "C3'" "O3'" sing N N 149 TAF "C3'" "H3'" sing N N 150 TAF "O3'" "HO'3" sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 388D 'double helix' 388D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.124 -0.188 0.234 5.174 -14.122 -0.877 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.368 -0.316 0.496 7.639 -11.003 -0.725 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.055 -0.209 0.455 -4.820 -5.824 0.858 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.366 -0.245 -0.063 9.685 -7.843 -0.588 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B TAF 8 1_555 0.224 -0.170 -0.044 4.848 -16.394 1.266 5 A_DA5:TAF20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B TAF 7 1_555 -0.061 -0.058 0.000 -2.050 -15.156 3.010 6 A_DA6:TAF19_B A 6 ? B 19 ? 20 1 1 A TAF 7 1_555 B DA 6 1_555 0.024 -0.074 0.193 -4.730 -19.202 1.994 7 A_TAF7:DA18_B A 7 ? B 18 ? 20 1 1 A TAF 8 1_555 B DA 5 1_555 -0.167 -0.202 -0.115 -0.534 -18.553 5.076 8 A_TAF8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.221 -0.160 -0.037 -13.381 -7.714 -1.757 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.075 -0.195 0.425 9.243 -3.858 1.126 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.135 -0.321 0.335 9.620 -15.831 -1.393 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.672 -0.371 -0.519 2.921 24.497 -4.631 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.152 0.061 3.196 -2.760 3.354 34.258 -0.406 -0.163 3.189 5.665 4.662 34.524 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.524 0.325 3.734 0.455 -6.870 41.942 1.239 -0.671 3.644 -9.520 -0.631 42.478 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.351 0.540 3.000 4.965 10.426 26.999 -1.048 1.700 2.897 21.145 -10.070 29.322 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B TAF 8 1_555 -0.008 -0.046 3.388 0.130 2.922 41.764 -0.381 0.026 3.378 4.092 -0.182 41.861 4 AA_DG4DA5:TAF20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B TAF 8 1_555 A DA 6 1_555 B TAF 7 1_555 0.087 -0.521 3.321 -1.053 2.113 31.912 -1.331 -0.351 3.276 3.837 1.912 31.997 5 AA_DA5DA6:TAF19TAF20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B TAF 7 1_555 A TAF 7 1_555 B DA 6 1_555 -0.181 -0.663 3.243 -2.062 -1.575 31.102 -0.934 -0.055 3.276 -2.931 3.837 31.207 6 AA_DA6TAF7:DA18TAF19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A TAF 7 1_555 B DA 6 1_555 A TAF 8 1_555 B DA 5 1_555 0.073 -0.342 3.086 4.382 -2.747 33.959 -0.171 0.528 3.089 -4.670 -7.448 34.340 7 AA_TAF7TAF8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A TAF 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.267 -0.173 3.523 -0.128 0.242 43.108 -0.261 0.350 3.522 0.329 0.175 43.109 8 AA_TAF8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.686 0.764 2.944 -5.370 1.743 28.115 1.194 -2.462 2.808 3.544 10.915 28.666 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.102 0.447 3.368 -2.528 -11.306 42.297 1.704 1.230 3.209 -15.327 3.427 43.785 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.002 0.484 3.869 7.650 -12.484 31.973 3.040 -0.291 3.580 -21.322 -13.066 35.086 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 388D _atom_sites.fract_transf_matrix[1][1] 0.040112 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025113 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015239 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F MG N O P # loop_