HEADER DNA BINDING PROTEIN 23-AUG-26 38EY TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE GACGGCCCG WITH POLY-T TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (37-MER); COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA BINDING PROTEIN, COCRYSTAL, POLY-T TAIL EXPDTA X-RAY DIFFRACTION AUTHOR C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,C.D.SNOW REVDAT 1 07-OCT-26 38EY 0 JRNL AUTH C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,C.D.SNOW JRNL TITL CRYSTALLINE BIOMATERIALS FOR SITE-SPECIFIC ORGANIZATION OF JRNL TITL 2 MODIFIED DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.520 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1000 - 7.6400 1.00 1417 148 0.2353 0.2747 REMARK 3 2 7.6400 - 6.0700 1.00 1373 144 0.3252 0.3315 REMARK 3 3 6.0700 - 5.3100 1.00 1362 144 0.2862 0.3826 REMARK 3 4 5.3000 - 4.8200 1.00 1335 140 0.2958 0.3263 REMARK 3 5 4.8200 - 4.4700 1.00 1324 140 0.2840 0.3052 REMARK 3 6 4.4700 - 4.2100 1.00 1337 140 0.2845 0.3531 REMARK 3 7 4.2100 - 4.0000 1.00 1332 141 0.3390 0.4428 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.676 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 193.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 259.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3147 REMARK 3 ANGLE : 0.776 4580 REMARK 3 CHIRALITY : 0.043 521 REMARK 3 PLANARITY : 0.007 362 REMARK 3 DIHEDRAL : 26.729 1264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0352 2.9774 -16.1794 REMARK 3 T TENSOR REMARK 3 T11: 2.1975 T22: 1.9438 REMARK 3 T33: 2.5939 T12: -0.0292 REMARK 3 T13: 0.5115 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 3.7347 L22: 0.4764 REMARK 3 L33: 6.8018 L12: -1.3098 REMARK 3 L13: 2.6632 L23: -0.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.5412 S12: -0.8226 S13: 1.5765 REMARK 3 S21: -0.8143 S22: -0.3605 S23: 1.0645 REMARK 3 S31: -0.6499 S32: 0.1771 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0644 40.0811 -12.6191 REMARK 3 T TENSOR REMARK 3 T11: 4.3218 T22: 2.7068 REMARK 3 T33: 2.8383 T12: -0.6501 REMARK 3 T13: 0.5353 T23: -0.1115 REMARK 3 L TENSOR REMARK 3 L11: 1.2178 L22: 0.0277 REMARK 3 L33: -0.0626 L12: 0.2439 REMARK 3 L13: -0.0823 L23: 0.0166 REMARK 3 S TENSOR REMARK 3 S11: 3.7764 S12: 0.8841 S13: 0.2487 REMARK 3 S21: 3.6992 S22: -2.5991 S23: 1.8623 REMARK 3 S31: -0.1155 S32: 0.5077 S33: 0.0244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9815 63.0273 -35.8652 REMARK 3 T TENSOR REMARK 3 T11: 5.0910 T22: 2.8559 REMARK 3 T33: 3.7427 T12: -0.0586 REMARK 3 T13: 1.1934 T23: 1.4932 REMARK 3 L TENSOR REMARK 3 L11: 9.3911 L22: 8.3297 REMARK 3 L33: 9.8334 L12: -8.8495 REMARK 3 L13: -9.6087 L23: 9.0491 REMARK 3 S TENSOR REMARK 3 S11: 0.6748 S12: 2.6018 S13: -2.9901 REMARK 3 S21: -1.7463 S22: -2.3086 S23: -2.7505 REMARK 3 S31: 4.1151 S32: -1.1331 S33: -1.9610 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5278 56.1655 -24.4109 REMARK 3 T TENSOR REMARK 3 T11: 3.6500 T22: 1.7317 REMARK 3 T33: 3.6407 T12: 1.1955 REMARK 3 T13: -1.3410 T23: 0.4316 REMARK 3 L TENSOR REMARK 3 L11: 2.0099 L22: 5.6123 REMARK 3 L33: 2.0053 L12: -4.7775 REMARK 3 L13: 4.6301 L23: -8.3401 REMARK 3 S TENSOR REMARK 3 S11: -0.4554 S12: 0.3767 S13: 2.4561 REMARK 3 S21: -3.9207 S22: -1.7713 S23: -3.2328 REMARK 3 S31: -0.2605 S32: 2.7506 S33: 5.0702 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1008 41.8994 -12.3596 REMARK 3 T TENSOR REMARK 3 T11: 4.0098 T22: 3.5374 REMARK 3 T33: 2.3531 T12: -0.4823 REMARK 3 T13: 0.1513 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.4735 L22: 0.5481 REMARK 3 L33: 0.1154 L12: 0.2461 REMARK 3 L13: 0.2077 L23: 0.1078 REMARK 3 S TENSOR REMARK 3 S11: -1.3461 S12: 2.4883 S13: 0.4341 REMARK 3 S21: 0.9010 S22: 1.2274 S23: 2.4257 REMARK 3 S31: 0.1769 S32: -0.1382 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2912 11.8575 -12.8118 REMARK 3 T TENSOR REMARK 3 T11: 2.2988 T22: 1.9914 REMARK 3 T33: 2.0232 T12: -0.3082 REMARK 3 T13: 0.4105 T23: -0.0645 REMARK 3 L TENSOR REMARK 3 L11: 5.5540 L22: 2.3215 REMARK 3 L33: 4.6084 L12: 3.6772 REMARK 3 L13: -2.1843 L23: -1.0181 REMARK 3 S TENSOR REMARK 3 S11: -0.4574 S12: -0.5051 S13: 0.9778 REMARK 3 S21: 0.4414 S22: 0.2380 S23: 0.6134 REMARK 3 S31: -0.6862 S32: -0.3994 S33: -0.0026 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8028 4.6683 -17.5097 REMARK 3 T TENSOR REMARK 3 T11: 1.8737 T22: 2.1504 REMARK 3 T33: 1.9332 T12: -0.4784 REMARK 3 T13: 0.5212 T23: -0.3486 REMARK 3 L TENSOR REMARK 3 L11: 3.7000 L22: 3.5964 REMARK 3 L33: 9.1688 L12: -0.0420 REMARK 3 L13: 4.7506 L23: -3.4226 REMARK 3 S TENSOR REMARK 3 S11: -0.3878 S12: 0.9195 S13: -2.1425 REMARK 3 S21: -2.4687 S22: 0.1988 S23: -0.4460 REMARK 3 S31: 1.3563 S32: -0.0614 S33: -0.0028 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0066 9.7203 -10.6919 REMARK 3 T TENSOR REMARK 3 T11: 1.4657 T22: 1.5804 REMARK 3 T33: 2.5883 T12: -0.1925 REMARK 3 T13: 0.1375 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.8888 L22: 5.8506 REMARK 3 L33: 4.0084 L12: -4.5300 REMARK 3 L13: -0.1352 L23: 1.8814 REMARK 3 S TENSOR REMARK 3 S11: 0.3253 S12: -2.0838 S13: 1.5726 REMARK 3 S21: 1.3473 S22: -0.9111 S23: 1.8331 REMARK 3 S31: -1.9234 S32: -0.8414 S33: -0.0202 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0904 9.2603 -5.2637 REMARK 3 T TENSOR REMARK 3 T11: 1.0283 T22: 3.8954 REMARK 3 T33: 2.0773 T12: -1.1044 REMARK 3 T13: 0.2706 T23: -0.6515 REMARK 3 L TENSOR REMARK 3 L11: 3.3583 L22: 1.9818 REMARK 3 L33: 1.3909 L12: -5.1729 REMARK 3 L13: 1.2415 L23: -2.7798 REMARK 3 S TENSOR REMARK 3 S11: 1.2698 S12: -2.2600 S13: 3.1154 REMARK 3 S21: 3.0302 S22: -1.7267 S23: -2.3105 REMARK 3 S31: -1.3484 S32: 0.8578 S33: -0.6526 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0887 3.6790 -24.4813 REMARK 3 T TENSOR REMARK 3 T11: 3.4931 T22: 2.4560 REMARK 3 T33: 2.2432 T12: -0.0797 REMARK 3 T13: 0.2312 T23: -0.6630 REMARK 3 L TENSOR REMARK 3 L11: 9.2872 L22: 5.4202 REMARK 3 L33: 2.5413 L12: -1.6349 REMARK 3 L13: 4.6614 L23: -1.8634 REMARK 3 S TENSOR REMARK 3 S11: -0.9238 S12: 0.6405 S13: 2.1869 REMARK 3 S21: -1.3623 S22: 0.0100 S23: 0.9131 REMARK 3 S31: 0.8117 S32: 3.2541 S33: -1.0015 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9738 -1.4612 -26.0211 REMARK 3 T TENSOR REMARK 3 T11: 1.1734 T22: 2.1654 REMARK 3 T33: 2.0115 T12: -0.7515 REMARK 3 T13: 0.6516 T23: -0.7108 REMARK 3 L TENSOR REMARK 3 L11: 6.0925 L22: 3.6085 REMARK 3 L33: 4.3536 L12: -0.9246 REMARK 3 L13: -1.3789 L23: -3.5391 REMARK 3 S TENSOR REMARK 3 S11: 0.4626 S12: -0.5686 S13: -0.8868 REMARK 3 S21: -0.4674 S22: 1.0280 S23: -1.9520 REMARK 3 S31: -0.7109 S32: 0.8907 S33: 1.6581 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 179 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0573 -5.5352 -18.3931 REMARK 3 T TENSOR REMARK 3 T11: 1.6328 T22: 2.2532 REMARK 3 T33: 2.4484 T12: 0.1946 REMARK 3 T13: -0.0174 T23: -0.4024 REMARK 3 L TENSOR REMARK 3 L11: 1.1832 L22: 4.6663 REMARK 3 L33: 0.7676 L12: -2.2768 REMARK 3 L13: -0.0597 L23: -0.2180 REMARK 3 S TENSOR REMARK 3 S11: -0.2587 S12: 0.3610 S13: -3.0132 REMARK 3 S21: 0.8425 S22: 1.1794 S23: 1.8873 REMARK 3 S31: 0.5323 S32: 1.7708 S33: 0.2248 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0470 -2.7839 -30.2966 REMARK 3 T TENSOR REMARK 3 T11: 1.8553 T22: 1.8310 REMARK 3 T33: 2.7975 T12: 0.1609 REMARK 3 T13: 0.3350 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 2.0417 L22: 3.7286 REMARK 3 L33: 2.5074 L12: -2.6830 REMARK 3 L13: 2.1418 L23: -3.1229 REMARK 3 S TENSOR REMARK 3 S11: 1.2845 S12: 0.8347 S13: -0.4902 REMARK 3 S21: 0.1563 S22: -1.3382 S23: -0.6775 REMARK 3 S31: 0.5729 S32: 1.0462 S33: 0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 38EY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-26. REMARK 100 THE DEPOSITION ID IS D_1000311208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10477 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM MAGNESIUM ACETATE, 1.2M LITHIUM REMARK 280 SULFATE, 50MM MES PH 6.5., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.10950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.10950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.28600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.35600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.28600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.35600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.10950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.28600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.35600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.10950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.28600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.35600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 14 CG OD1 ND2 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 LEU C 31 CG CD1 CD2 REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 PHE C 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 43 CG1 CG2 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 SER C 49 OG REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 ILE C 59 CG1 CG2 CD1 REMARK 470 GLU C 61 CG CD OE1 OE2 REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 HIS C 63 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 TYR C 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 PHE C 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 LYS C 80 CG CD CE NZ REMARK 470 GLN C 84 CG CD OE1 NE2 REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 PHE C 89 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 GLU C 93 CG CD OE1 OE2 REMARK 470 PHE C 96 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 PHE C 112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 115 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 116 CG1 CG2 CD1 REMARK 470 LYS C 117 CE NZ REMARK 470 TYR C 134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 PHE C 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 140 CG1 CG2 CD1 REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 LEU C 183 CG CD1 CD2 REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 ASP C 186 CG OD1 OD2 REMARK 470 MET C 201 CG SD CE REMARK 470 GLU C 215 CG CD OE1 OE2 REMARK 470 ARG C 219 CG CD NE CZ NH1 NH2 REMARK 470 MET C 222 CG SD CE REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 237 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 142 N ASN C 144 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 P DG B 1 OP3 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 8 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 20 -163.92 -127.69 REMARK 500 TYR C 109 111.33 -173.96 REMARK 500 LEU C 142 43.73 -85.52 REMARK 500 GLN C 143 -46.98 28.52 REMARK 500 ARG C 145 75.91 -114.52 REMARK 500 PHE C 208 -66.43 -107.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 15 OP2 REMARK 620 2 GLU C 77 OE2 107.1 REMARK 620 3 ASP C 81 OD1 133.0 84.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 38EX RELATED DB: PDB DBREF 38EY B 1 31 PDB 38EY 38EY 1 31 DBREF 38EY A -5 31 PDB 38EY 38EY -5 31 DBREF 38EY C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 38EY MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 38EY ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 38EY GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 38EY SER C -8 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 38EY HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 38EY GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 38EY SER C 0 UNP P03856 EXPRESSION TAG SEQADV 38EY PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 B 31 DG DA DC DT DG DT DG DA DC DA DA DA DT SEQRES 2 B 31 DT DG DC DC DC DT DC DA DA DG DA DC DG SEQRES 3 B 31 DG DC DC DC DG SEQRES 1 A 37 DT DT DT DT DT DT DT DC DC DG DG DG DC SEQRES 2 A 37 DC DG DT DC DT DT DG DA DG DG DG DC DA SEQRES 3 A 37 DA DT DT DT DG DT DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 SER C 21 GLU C 26 1 6 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 LEU C 135 ILE C 140 1 6 HELIX 6 AA6 SER C 152 THR C 154 5 3 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 GLN C 20 0 SHEET 2 AA1 2 THR C 147 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 PHE C 115 SER C 123 -1 N ILE C 116 O HIS C 130 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N SER C 225 O SER C 241 LINK OP2 DG B 15 MG MG C 301 1555 1555 2.66 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.04 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.56 CRYST1 122.572 152.712 128.219 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007799 0.00000 CONECT 293 2953 CONECT 1756 2953 CONECT 1779 2953 CONECT 2953 293 1756 1779 MASTER 620 0 1 11 10 0 0 6 2913 3 4 27 END