HEADER DNA BINDING PROTEIN 23-AUG-26 38EP TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX CONTAINING TITLE 2 INSERT SEQUENCE GACGGCCCGG AND Y184E MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA BINDING PROTEIN, COCRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,C.D.SNOW REVDAT 1 09-SEP-26 38EP 0 JRNL AUTH C.K.SLAUGHTER,E.T.SHIELDS,E.N.MAGNA,C.D.SNOW JRNL TITL CRYSTALLINE BIOMATERIALS FOR SITE-SPECIFIC ORGANIZATION OF JRNL TITL 2 MODIFIED DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 14036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0100 - 7.6600 0.89 1207 131 0.1878 0.2574 REMARK 3 2 7.6600 - 6.0800 0.95 1266 146 0.3085 0.3081 REMARK 3 3 6.0800 - 5.3200 0.98 1306 141 0.2801 0.3301 REMARK 3 4 5.3200 - 4.8300 0.99 1310 138 0.2770 0.3144 REMARK 3 5 4.8300 - 4.4900 0.99 1293 147 0.2580 0.2947 REMARK 3 6 4.4800 - 4.2200 0.90 1204 136 0.3001 0.3512 REMARK 3 7 4.2200 - 4.0100 0.94 1238 120 0.3406 0.4160 REMARK 3 8 4.0100 - 3.8300 0.97 1266 141 0.3677 0.4245 REMARK 3 9 3.8300 - 3.6900 0.97 1294 143 0.3871 0.4174 REMARK 3 10 3.6900 - 3.5600 0.97 1269 140 0.4019 0.4444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.719 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 150.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 222.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2973 REMARK 3 ANGLE : 0.801 4324 REMARK 3 CHIRALITY : 0.048 483 REMARK 3 PLANARITY : 0.007 357 REMARK 3 DIHEDRAL : 28.806 1165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2409 -23.3947 -14.9766 REMARK 3 T TENSOR REMARK 3 T11: 2.0560 T22: 1.9526 REMARK 3 T33: 1.6304 T12: 0.0086 REMARK 3 T13: -0.5836 T23: 0.3907 REMARK 3 L TENSOR REMARK 3 L11: 5.2721 L22: 3.8975 REMARK 3 L33: 3.4911 L12: -1.6472 REMARK 3 L13: -1.3147 L23: 3.7522 REMARK 3 S TENSOR REMARK 3 S11: -0.3254 S12: 1.0785 S13: -0.3250 REMARK 3 S21: 1.1616 S22: 0.0721 S23: -0.2647 REMARK 3 S31: 0.5993 S32: 0.0837 S33: 0.1663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.4014 12.0874 -44.6552 REMARK 3 T TENSOR REMARK 3 T11: 2.5280 T22: 2.8188 REMARK 3 T33: 2.7105 T12: -0.0508 REMARK 3 T13: 0.3080 T23: 0.2527 REMARK 3 L TENSOR REMARK 3 L11: 1.3624 L22: 3.9664 REMARK 3 L33: 0.1273 L12: -0.5119 REMARK 3 L13: 0.3982 L23: -0.4729 REMARK 3 S TENSOR REMARK 3 S11: 0.2454 S12: -2.8164 S13: -0.1471 REMARK 3 S21: -1.2883 S22: 1.5556 S23: 1.5284 REMARK 3 S31: 0.5848 S32: -0.0832 S33: -1.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4766 18.7579 -51.2385 REMARK 3 T TENSOR REMARK 3 T11: 2.9121 T22: 3.0784 REMARK 3 T33: 3.4994 T12: -0.3784 REMARK 3 T13: 0.1962 T23: 1.2446 REMARK 3 L TENSOR REMARK 3 L11: 4.8316 L22: 6.3943 REMARK 3 L33: 1.9326 L12: -0.9260 REMARK 3 L13: 1.2842 L23: -0.8356 REMARK 3 S TENSOR REMARK 3 S11: -0.5024 S12: -1.6327 S13: -0.0714 REMARK 3 S21: -0.9485 S22: 1.6114 S23: -2.3086 REMARK 3 S31: 0.3441 S32: 0.7423 S33: -0.1625 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3507 -17.7267 -20.2223 REMARK 3 T TENSOR REMARK 3 T11: 2.0562 T22: 1.9822 REMARK 3 T33: 1.8694 T12: -0.1714 REMARK 3 T13: -0.2738 T23: 0.8497 REMARK 3 L TENSOR REMARK 3 L11: 1.6564 L22: 1.3346 REMARK 3 L33: 3.4852 L12: -0.3951 REMARK 3 L13: -0.7205 L23: 2.1997 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.6720 S13: 0.6472 REMARK 3 S21: -0.4802 S22: 0.7810 S23: 0.6985 REMARK 3 S31: -0.6519 S32: -2.0484 S33: -0.2590 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0935 0.6336 -6.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.8565 T22: 1.3919 REMARK 3 T33: 2.5184 T12: -0.1978 REMARK 3 T13: -0.1845 T23: 0.4010 REMARK 3 L TENSOR REMARK 3 L11: 1.8502 L22: 6.1837 REMARK 3 L33: 5.8209 L12: 1.9992 REMARK 3 L13: -0.7089 L23: 2.2951 REMARK 3 S TENSOR REMARK 3 S11: 1.5903 S12: 0.8455 S13: 1.7129 REMARK 3 S21: 1.0550 S22: -0.6427 S23: -0.6759 REMARK 3 S31: 0.7969 S32: 3.3198 S33: 0.1035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3502 4.5483 -14.9813 REMARK 3 T TENSOR REMARK 3 T11: 1.6223 T22: 2.0349 REMARK 3 T33: 1.5022 T12: 0.0246 REMARK 3 T13: 0.1332 T23: 0.5648 REMARK 3 L TENSOR REMARK 3 L11: 6.4116 L22: 1.6716 REMARK 3 L33: 3.6207 L12: -0.0650 REMARK 3 L13: -1.5771 L23: 0.6093 REMARK 3 S TENSOR REMARK 3 S11: -0.9081 S12: 2.8039 S13: 2.7092 REMARK 3 S21: -1.4319 S22: 0.3295 S23: 1.5153 REMARK 3 S31: -2.1811 S32: 0.9188 S33: -0.5991 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8227 -3.6353 -9.0797 REMARK 3 T TENSOR REMARK 3 T11: 1.5786 T22: 0.4063 REMARK 3 T33: 1.6558 T12: -0.4429 REMARK 3 T13: -0.4033 T23: 1.0574 REMARK 3 L TENSOR REMARK 3 L11: 1.9181 L22: 0.5558 REMARK 3 L33: 1.1401 L12: 0.9349 REMARK 3 L13: 0.1481 L23: 0.3537 REMARK 3 S TENSOR REMARK 3 S11: -0.5687 S12: 1.2612 S13: 0.9927 REMARK 3 S21: 0.5181 S22: 0.5525 S23: 1.1840 REMARK 3 S31: -0.2059 S32: -0.0130 S33: -0.0284 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9524 5.0837 -12.5315 REMARK 3 T TENSOR REMARK 3 T11: 1.0249 T22: 1.7705 REMARK 3 T33: 2.1417 T12: 0.2096 REMARK 3 T13: 0.2709 T23: 0.7098 REMARK 3 L TENSOR REMARK 3 L11: 3.9943 L22: 6.3828 REMARK 3 L33: 8.5647 L12: 4.4261 REMARK 3 L13: 5.6845 L23: 7.1608 REMARK 3 S TENSOR REMARK 3 S11: -1.0129 S12: -0.2453 S13: 2.6382 REMARK 3 S21: -1.1822 S22: -0.4692 S23: 3.1439 REMARK 3 S31: -2.5831 S32: -1.7814 S33: -1.3530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3081 2.9404 -7.1551 REMARK 3 T TENSOR REMARK 3 T11: 1.7718 T22: 1.3571 REMARK 3 T33: 1.6851 T12: 0.4185 REMARK 3 T13: -0.9003 T23: -0.1721 REMARK 3 L TENSOR REMARK 3 L11: 6.4126 L22: 0.9245 REMARK 3 L33: 4.2417 L12: 2.3242 REMARK 3 L13: -2.4094 L23: -0.3123 REMARK 3 S TENSOR REMARK 3 S11: 0.9151 S12: -0.4521 S13: 2.5175 REMARK 3 S21: -2.1943 S22: -1.7885 S23: 0.9105 REMARK 3 S31: -3.0097 S32: -1.0925 S33: 1.3121 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8526 -12.8302 -3.2042 REMARK 3 T TENSOR REMARK 3 T11: 0.9824 T22: 1.1478 REMARK 3 T33: 1.6587 T12: -0.3287 REMARK 3 T13: 0.0031 T23: 0.8774 REMARK 3 L TENSOR REMARK 3 L11: 4.5781 L22: 4.4381 REMARK 3 L33: 5.7921 L12: -1.3268 REMARK 3 L13: -0.1407 L23: 2.1667 REMARK 3 S TENSOR REMARK 3 S11: 0.5429 S12: 0.3055 S13: 1.4269 REMARK 3 S21: 0.5960 S22: 0.1821 S23: -0.8210 REMARK 3 S31: 0.2140 S32: -0.4987 S33: -0.3460 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5867 -13.3745 -10.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.7113 T22: 0.8362 REMARK 3 T33: 0.1396 T12: -0.9940 REMARK 3 T13: 0.9507 T23: 0.9995 REMARK 3 L TENSOR REMARK 3 L11: 2.2680 L22: 0.2748 REMARK 3 L33: 0.0156 L12: -0.8957 REMARK 3 L13: -0.2567 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.2240 S12: 0.3366 S13: 0.0492 REMARK 3 S21: -0.6314 S22: -0.0024 S23: -0.5677 REMARK 3 S31: -0.0822 S32: 0.9857 S33: 2.4435 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 232 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5217 -12.5542 -4.3453 REMARK 3 T TENSOR REMARK 3 T11: 2.2040 T22: 1.1345 REMARK 3 T33: 1.6415 T12: -0.2659 REMARK 3 T13: -0.7395 T23: 0.3473 REMARK 3 L TENSOR REMARK 3 L11: 6.4071 L22: 7.6586 REMARK 3 L33: 2.0208 L12: 0.6179 REMARK 3 L13: -1.9740 L23: -0.8900 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 1.5491 S13: 0.4399 REMARK 3 S21: 0.5798 S22: 1.2409 S23: 2.4905 REMARK 3 S31: -3.0997 S32: 1.1726 S33: 0.3782 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 38EP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-26. REMARK 100 THE DEPOSITION ID IS D_1000311201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14077 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.560 REMARK 200 RESOLUTION RANGE LOW (A) : 46.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM MAGNESIUM ACETATE, 1.5 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.56471 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.56550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.57689 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.56471 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.56550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 65.57689 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 GLY C 53 REMARK 465 GLY C 54 REMARK 465 GLY C 55 REMARK 465 HIS C 56 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 VAL C 19 CG1 CG2 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 LEU C 31 CG CD1 CD2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 MET C 38 CG SD CE REMARK 470 LEU C 39 CG CD1 CD2 REMARK 470 TYR C 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 PHE C 42 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 43 CG1 CG2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 ILE C 59 CG1 CG2 CD1 REMARK 470 CYS C 60 SG REMARK 470 GLU C 61 CG CD OE1 OE2 REMARK 470 ILE C 62 CG1 CG2 CD1 REMARK 470 HIS C 63 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 TYR C 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 ILE C 70 CG1 CG2 CD1 REMARK 470 PHE C 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 SER C 75 OG REMARK 470 ILE C 82 CG1 CG2 CD1 REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 PHE C 96 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 SER C 111 OG REMARK 470 ILE C 116 CG1 CG2 CD1 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 LEU C 126 CG CD1 CD2 REMARK 470 SER C 128 OG REMARK 470 VAL C 129 CG1 CG2 REMARK 470 ILE C 131 CG1 CG2 CD1 REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 ILE C 136 CG1 CG2 CD1 REMARK 470 PHE C 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 151 CG CD1 CD2 REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 GLU C 156 CG CD OE1 OE2 REMARK 470 ILE C 157 CG1 CG2 CD1 REMARK 470 LEU C 165 CG CD1 CD2 REMARK 470 GLU C 167 CG CD OE1 OE2 REMARK 470 LEU C 169 CG CD1 CD2 REMARK 470 GLU C 172 CG CD OE1 OE2 REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ILE C 180 CG1 CG2 CD1 REMARK 470 LEU C 183 CG CD1 CD2 REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 ILE C 189 CG1 CG2 CD1 REMARK 470 LEU C 209 CG CD1 CD2 REMARK 470 GLN C 210 CG CD OE1 NE2 REMARK 470 VAL C 211 CG1 CG2 REMARK 470 VAL C 213 CG1 CG2 REMARK 470 ASN C 214 CG OD1 ND2 REMARK 470 GLU C 215 CG CD OE1 OE2 REMARK 470 ARG C 219 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 224 CG CD1 CD2 REMARK 470 ILE C 227 CG1 CG2 CD1 REMARK 470 GLU C 228 CG CD OE1 OE2 REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 239 CG1 CG2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 0 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG A 30 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -165.01 -118.93 REMARK 500 ARG C 145 72.89 -117.34 REMARK 500 PHE C 208 -67.21 -107.26 REMARK 500 THR C 246 0.02 -66.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 14 OP2 REMARK 620 2 GLU C 77 OE2 109.7 REMARK 620 3 ASP C 81 OD1 151.3 87.2 REMARK 620 4 ASP C 81 OD2 126.5 120.4 53.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 38EL RELATED DB: PDB REMARK 900 RELATED ID: 36OT RELATED DB: PDB DBREF 38EP A 0 30 PDB 38EP 38EP 0 30 DBREF 38EP B 12 42 PDB 38EP 38EP 12 42 DBREF 38EP C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 38EP MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 38EP ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 38EP GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 38EP SER C -8 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 38EP HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 38EP GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 38EP SER C 0 UNP P03856 EXPRESSION TAG SEQADV 38EP GLY C 53 UNP P03856 LEU 53 CONFLICT SEQADV 38EP GLY C 54 UNP P03856 GLN 54 CONFLICT SEQADV 38EP GLY C 55 UNP P03856 GLU 55 CONFLICT SEQADV 38EP PRO C 118 UNP P03856 ARG 118 CONFLICT SEQADV 38EP GLU C 172 UNP P03856 TYR 172 ENGINEERED MUTATION SEQRES 1 A 31 DG DA DC DT DG DT DG DA DC DA DA DA DT SEQRES 2 A 31 DT DG DC DC DC DT DC DA DA DG DA DC DG SEQRES 3 A 31 DG DC DC DC DG SEQRES 1 B 31 DC DT DC DC DG DG DG DC DC DG DT DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR GLY SEQRES 6 C 263 GLY GLY HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN GLU ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 SER C 21 GLU C 26 1 6 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 GLU C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 GLN C 20 0 SHEET 2 AA1 2 THR C 147 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK OP2 DG A 14 MG MG C 301 1555 1555 2.57 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.02 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.52 LINK OD2 ASP C 81 MG MG C 301 1555 1555 2.42 CRYST1 73.329 129.131 131.221 90.00 91.83 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013637 0.000000 0.000437 0.00000 SCALE2 0.000000 0.007744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007625 0.00000 CONECT 292 2785 CONECT 1621 2785 CONECT 1648 2785 CONECT 1649 2785 CONECT 2785 292 1621 1648 1649 MASTER 584 0 1 12 10 0 0 6 2757 3 5 27 END