data_393D
# 
_entry.id   393D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   393D         pdb_0000393d 10.2210/pdb393d/pdb 
RCSB  UHJ073       ?            ?                   
WWPDB D_1000178857 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1998-05-01 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2016-12-14 
5 'Structure model' 1 4 2017-02-01 
6 'Structure model' 1 5 2017-05-03 
7 'Structure model' 1 6 2024-02-21 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Structure summary'         
4 5 'Structure model' 'Database references'       
5 6 'Structure model' 'Source and taxonomy'       
6 6 'Structure model' 'Structure summary'         
7 7 'Structure model' 'Data collection'           
8 7 'Structure model' 'Database references'       
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 7 'Structure model' chem_comp_atom 
2 7 'Structure model' chem_comp_bond 
3 7 'Structure model' database_2     
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 7 'Structure model' '_database_2.pdbx_DOI'                
2 7 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        393D 
_pdbx_database_status.recvd_initial_deposition_date   1998-04-29 
_pdbx_database_status.deposit_site                    NDB 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Ban, C.'           1 ? 
'Sundaralingam, M.' 2 ? 
'Ramakrishnan, B.'  3 ? 
# 
_citation.id                        primary 
_citation.title                     
'Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)' 
_citation.journal_abbrev            'To be Published' 
_citation.journal_volume            ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.year                      ? 
_citation.journal_id_ASTM           ? 
_citation.country                   ? 
_citation.journal_id_ISSN           ? 
_citation.journal_id_CSD            0353 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Ban, C.'           1 ? 
primary 'Ramakrishnan, B.'  2 ? 
primary 'Sundaralingam, M.' 3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3')
;
3062.980 2  ? ? ? ? 
2 water   nat water                                                      18.015   70 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           'polydeoxyribonucleotide/polyribonucleotide hybrid' 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DG)(DG)C(DG)(DC)(DC)(DG)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCGGCGCCGG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DG n 
1 4  DG n 
1 5  C  n 
1 6  DG n 
1 7  DC n 
1 8  DC n 
1 9  DG n 
1 10 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"          ? 'C9 H14 N3 O8 P'  323.197 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DC 2  2  2  DC C A . n 
A 1 3  DG 3  3  3  DG G A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  C  5  5  5  C  C A . n 
A 1 6  DG 6  6  6  DG G A . n 
A 1 7  DC 7  7  7  DC C A . n 
A 1 8  DC 8  8  8  DC C A . n 
A 1 9  DG 9  9  9  DG G A . n 
A 1 10 DG 10 10 10 DG G A . n 
B 1 1  DC 1  11 11 DC C B . n 
B 1 2  DC 2  12 12 DC C B . n 
B 1 3  DG 3  13 13 DG G B . n 
B 1 4  DG 4  14 14 DG G B . n 
B 1 5  C  5  15 15 C  C B . n 
B 1 6  DG 6  16 16 DG G B . n 
B 1 7  DC 7  17 17 DC C B . n 
B 1 8  DC 8  18 18 DC C B . n 
B 1 9  DG 9  19 19 DG G B . n 
B 1 10 DG 10 20 20 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HOH 1  21 21 HOH HOH A . 
C 2 HOH 2  23 23 HOH HOH A . 
C 2 HOH 3  25 25 HOH HOH A . 
C 2 HOH 4  27 27 HOH HOH A . 
C 2 HOH 5  28 28 HOH HOH A . 
C 2 HOH 6  29 29 HOH HOH A . 
C 2 HOH 7  30 30 HOH HOH A . 
C 2 HOH 8  31 31 HOH HOH A . 
C 2 HOH 9  32 32 HOH HOH A . 
C 2 HOH 10 33 33 HOH HOH A . 
C 2 HOH 11 34 34 HOH HOH A . 
C 2 HOH 12 35 35 HOH HOH A . 
C 2 HOH 13 36 36 HOH HOH A . 
C 2 HOH 14 39 39 HOH HOH A . 
C 2 HOH 15 40 40 HOH HOH A . 
C 2 HOH 16 44 44 HOH HOH A . 
C 2 HOH 17 47 47 HOH HOH A . 
C 2 HOH 18 48 48 HOH HOH A . 
C 2 HOH 19 49 49 HOH HOH A . 
C 2 HOH 20 50 50 HOH HOH A . 
C 2 HOH 21 51 51 HOH HOH A . 
C 2 HOH 22 54 54 HOH HOH A . 
C 2 HOH 23 57 57 HOH HOH A . 
C 2 HOH 24 60 60 HOH HOH A . 
C 2 HOH 25 62 62 HOH HOH A . 
C 2 HOH 26 65 65 HOH HOH A . 
C 2 HOH 27 66 66 HOH HOH A . 
C 2 HOH 28 67 67 HOH HOH A . 
C 2 HOH 29 69 69 HOH HOH A . 
C 2 HOH 30 70 70 HOH HOH A . 
C 2 HOH 31 71 71 HOH HOH A . 
C 2 HOH 32 73 73 HOH HOH A . 
C 2 HOH 33 77 77 HOH HOH A . 
C 2 HOH 34 80 80 HOH HOH A . 
C 2 HOH 35 82 82 HOH HOH A . 
C 2 HOH 36 84 84 HOH HOH A . 
C 2 HOH 37 85 85 HOH HOH A . 
C 2 HOH 38 87 87 HOH HOH A . 
C 2 HOH 39 88 88 HOH HOH A . 
C 2 HOH 40 89 89 HOH HOH A . 
C 2 HOH 41 90 90 HOH HOH A . 
D 2 HOH 1  22 22 HOH HOH B . 
D 2 HOH 2  24 24 HOH HOH B . 
D 2 HOH 3  26 26 HOH HOH B . 
D 2 HOH 4  37 37 HOH HOH B . 
D 2 HOH 5  38 38 HOH HOH B . 
D 2 HOH 6  41 41 HOH HOH B . 
D 2 HOH 7  42 42 HOH HOH B . 
D 2 HOH 8  43 43 HOH HOH B . 
D 2 HOH 9  45 45 HOH HOH B . 
D 2 HOH 10 46 46 HOH HOH B . 
D 2 HOH 11 52 52 HOH HOH B . 
D 2 HOH 12 53 53 HOH HOH B . 
D 2 HOH 13 55 55 HOH HOH B . 
D 2 HOH 14 56 56 HOH HOH B . 
D 2 HOH 15 58 58 HOH HOH B . 
D 2 HOH 16 59 59 HOH HOH B . 
D 2 HOH 17 61 61 HOH HOH B . 
D 2 HOH 18 63 63 HOH HOH B . 
D 2 HOH 19 64 64 HOH HOH B . 
D 2 HOH 20 68 68 HOH HOH B . 
D 2 HOH 21 72 72 HOH HOH B . 
D 2 HOH 22 74 74 HOH HOH B . 
D 2 HOH 23 75 75 HOH HOH B . 
D 2 HOH 24 76 76 HOH HOH B . 
D 2 HOH 25 78 78 HOH HOH B . 
D 2 HOH 26 79 79 HOH HOH B . 
D 2 HOH 27 81 81 HOH HOH B . 
D 2 HOH 28 83 83 HOH HOH B . 
D 2 HOH 29 86 86 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
XENGEN 'data collection' .   ? 1 
XENGEN 'data reduction'  .   ? 2 
X-PLOR refinement        3.2 ? 3 
XENGEN 'data scaling'    .   ? 4 
# 
_cell.entry_id           393D 
_cell.length_a           24.520 
_cell.length_b           44.850 
_cell.length_c           47.580 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         393D 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          393D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   39.69 
_exptl_crystal.density_Matthews      2.04 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            291.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.00 
_exptl_crystal_grow.pdbx_details    'pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 291.00K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER             ? ? ? 
1 2 1 NA-CACODYLATE     ? ? ? 
1 3 1 'COBALT HEXAMINE' ? ? ? 
1 4 2 WATER             ? ? ? 
1 5 2 MPD               ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           ? 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'AREA DETECTOR' 
_diffrn_detector.type                   SIEMENS 
_diffrn_detector.pdbx_collection_date   1995-06-13 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_reflns.entry_id                     393D 
_reflns.observed_criterion_sigma_I   3.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             20.000 
_reflns.d_resolution_high            2.000 
_reflns.number_obs                   3219 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         96.000 
_reflns.pdbx_Rmerge_I_obs            0.049 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              4.0 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_refine.entry_id                                 393D 
_refine.ls_number_reflns_obs                     2902 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          1.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.000 
_refine.ls_d_res_high                            2.000 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.181 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_phase_error                 ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   406 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             70 
_refine_hist.number_atoms_total               476 
_refine_hist.d_res_high                       2.000 
_refine_hist.d_res_low                        8.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.016 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             3.80  ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    393D 
_pdbx_refine.R_factor_all_no_cutoff                      0. 
_pdbx_refine.R_factor_obs_no_cutoff                      0. 
_pdbx_refine.free_R_factor_no_cutoff                     0. 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     ? 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            ? 
_pdbx_refine.R_factor_all_4sig_cutoff                    0. 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0. 
_pdbx_refine.free_R_factor_4sig_cutoff                   0. 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   ? 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          ? 
_pdbx_refine.number_reflns_obs_4sig_cutoff               ? 
_pdbx_refine.number_reflns_obs_no_cutoff                 ? 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_pdbx_xplor_file.serial_no        1 
_pdbx_xplor_file.param_file       PARAM11.DNA 
_pdbx_xplor_file.topol_file       ? 
_pdbx_xplor_file.pdbx_refine_id   'X-RAY DIFFRACTION' 
# 
_database_PDB_matrix.entry_id          393D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  393D 
_struct.title                     
'CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        393D 
_struct_keywords.pdbx_keywords   DNA/RNA 
_struct_keywords.text            'A-T-RNA, DOUBLE HELIX, DNA-RNA COMPLEX' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    393D 
_struct_ref.pdbx_db_accession          393D 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 393D A 1 ? 10 ? 393D 1  ? 10 ? 1  10 
2 1 393D B 1 ? 10 ? 393D 11 ? 20 ? 11 20 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1  B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DC 2  N3 ? ? ? 1_555 B DG 9  N1 ? ? A DC 2  B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DC 2  N4 ? ? ? 1_555 B DG 9  O6 ? ? A DC 2  B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DC 2  O2 ? ? ? 1_555 B DG 9  N2 ? ? A DC 2  B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DG 3  N1 ? ? ? 1_555 B DC 8  N3 ? ? A DG 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DG 3  N2 ? ? ? 1_555 B DC 8  O2 ? ? A DG 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DG 3  O6 ? ? ? 1_555 B DC 8  N4 ? ? A DG 3  B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC 7  N3 ? ? A DG 4  B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC 7  O2 ? ? A DG 4  B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC 7  N4 ? ? A DG 4  B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A C  5  N3 ? ? ? 1_555 B DG 6  N1 ? ? A C  5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A C  5  N4 ? ? ? 1_555 B DG 6  O6 ? ? A C  5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A C  5  O2 ? ? ? 1_555 B DG 6  N2 ? ? A C  5  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 6  N1 ? ? ? 1_555 B C  5  N3 ? ? A DG 6  B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DG 6  N2 ? ? ? 1_555 B C  5  O2 ? ? A DG 6  B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DG 6  O6 ? ? ? 1_555 B C  5  N4 ? ? A DG 6  B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DC 7  N3 ? ? ? 1_555 B DG 4  N1 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DC 7  N4 ? ? ? 1_555 B DG 4  O6 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 7  O2 ? ? ? 1_555 B DG 4  N2 ? ? A DC 7  B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 8  N3 ? ? ? 1_555 B DG 3  N1 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DC 8  N4 ? ? ? 1_555 B DG 3  O6 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DC 8  O2 ? ? ? 1_555 B DG 3  N2 ? ? A DC 8  B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DG 9  N1 ? ? ? 1_555 B DC 2  N3 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DG 9  N2 ? ? ? 1_555 B DC 2  O2 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DG 9  O6 ? ? ? 1_555 B DC 2  N4 ? ? A DG 9  B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1  N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1  O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1  N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 P     A DG 3  ? ? "O5'" A DG 3  ? ? 1.672 1.593 0.079  0.010 N 
2 1 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.460 1.516 -0.056 0.008 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 99.72  105.90 -6.18  0.80 N 
2  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 112.04 108.30 3.74   0.30 N 
3  1 N3    A DC 1  ? ? C4    A DC 1  ? ? C5    A DC 1  ? ? 119.10 121.90 -2.80  0.40 N 
4  1 N3    A DC 1  ? ? C4    A DC 1  ? ? N4    A DC 1  ? ? 122.23 118.00 4.23   0.70 N 
5  1 "O4'" A DC 2  ? ? "C1'" A DC 2  ? ? N1    A DC 2  ? ? 113.80 108.30 5.50   0.30 N 
6  1 "O3'" A DC 2  ? ? P     A DG 3  ? ? "O5'" A DG 3  ? ? 121.63 104.00 17.63  1.90 Y 
7  1 "O3'" A DC 2  ? ? P     A DG 3  ? ? OP2   A DG 3  ? ? 119.12 110.50 8.62   1.10 Y 
8  1 "O3'" A DC 2  ? ? P     A DG 3  ? ? OP1   A DG 3  ? ? 70.02  105.20 -35.18 2.20 Y 
9  1 "O4'" A DG 3  ? ? "C1'" A DG 3  ? ? N9    A DG 3  ? ? 112.83 108.30 4.53   0.30 N 
10 1 "C3'" A DG 3  ? ? "O3'" A DG 3  ? ? P     A DG 4  ? ? 128.04 119.70 8.34   1.20 Y 
11 1 "O3'" A DG 3  ? ? P     A DG 4  ? ? "O5'" A DG 4  ? ? 88.51  104.00 -15.49 1.90 Y 
12 1 "O3'" A DG 3  ? ? P     A DG 4  ? ? OP2   A DG 4  ? ? 85.31  105.20 -19.89 2.20 Y 
13 1 "O3'" A DG 3  ? ? P     A DG 4  ? ? OP1   A DG 4  ? ? 130.30 110.50 19.80  1.10 Y 
14 1 "O5'" A DG 4  ? ? P     A DG 4  ? ? OP1   A DG 4  ? ? 118.32 110.70 7.62   1.20 N 
15 1 "O4'" A C  5  ? ? "C1'" A C  5  ? ? N1    A C  5  ? ? 117.76 108.50 9.26   0.70 N 
16 1 N1    A C  5  ? ? C2    A C  5  ? ? O2    A C  5  ? ? 123.22 118.90 4.32   0.60 N 
17 1 N3    A C  5  ? ? C2    A C  5  ? ? O2    A C  5  ? ? 116.22 121.90 -5.68  0.70 N 
18 1 "C4'" A DG 6  ? ? "C3'" A DG 6  ? ? "C2'" A DG 6  ? ? 96.80  102.20 -5.40  0.70 N 
19 1 "O4'" A DG 6  ? ? "C1'" A DG 6  ? ? N9    A DG 6  ? ? 111.64 108.30 3.34   0.30 N 
20 1 "O4'" A DC 7  ? ? "C1'" A DC 7  ? ? N1    A DC 7  ? ? 116.42 108.30 8.12   0.30 N 
21 1 "C3'" A DC 7  ? ? "O3'" A DC 7  ? ? P     A DC 8  ? ? 111.68 119.70 -8.02  1.20 Y 
22 1 "O3'" A DC 7  ? ? P     A DC 8  ? ? OP2   A DC 8  ? ? 121.17 110.50 10.67  1.10 Y 
23 1 "O3'" A DC 7  ? ? P     A DC 8  ? ? OP1   A DC 8  ? ? 87.58  105.20 -17.62 2.20 Y 
24 1 "C4'" A DC 8  ? ? "C3'" A DC 8  ? ? "C2'" A DC 8  ? ? 96.44  102.20 -5.76  0.70 N 
25 1 N1    A DC 8  ? ? C2    A DC 8  ? ? O2    A DC 8  ? ? 123.95 118.90 5.05   0.60 N 
26 1 N3    A DC 8  ? ? C2    A DC 8  ? ? O2    A DC 8  ? ? 117.19 121.90 -4.71  0.70 N 
27 1 "O3'" A DC 8  ? ? P     A DG 9  ? ? OP2   A DG 9  ? ? 127.84 110.50 17.34  1.10 Y 
28 1 "O3'" A DC 8  ? ? P     A DG 9  ? ? OP1   A DG 9  ? ? 88.09  105.20 -17.11 2.20 Y 
29 1 "O4'" A DG 9  ? ? "C1'" A DG 9  ? ? N9    A DG 9  ? ? 110.25 108.30 1.95   0.30 N 
30 1 "O3'" A DG 9  ? ? P     A DG 10 ? ? OP2   A DG 10 ? ? 121.40 110.50 10.90  1.10 Y 
31 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9    A DG 10 ? ? 112.75 108.30 4.45   0.30 N 
32 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1    B DC 11 ? ? 110.78 108.30 2.48   0.30 N 
33 1 N1    B DC 12 ? ? C2    B DC 12 ? ? O2    B DC 12 ? ? 123.31 118.90 4.41   0.60 N 
34 1 "O3'" B DC 12 ? ? P     B DG 13 ? ? "O5'" B DG 13 ? ? 121.24 104.00 17.24  1.90 Y 
35 1 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 96.56  102.20 -5.64  0.70 N 
36 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9    B DG 13 ? ? 110.77 108.30 2.47   0.30 N 
37 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 112.05 108.30 3.75   0.30 N 
38 1 N1    B C  15 ? ? C2    B C  15 ? ? O2    B C  15 ? ? 122.97 118.90 4.07   0.60 N 
39 1 "C3'" B C  15 ? ? "O3'" B C  15 ? ? P     B DG 16 ? ? 126.91 119.70 7.21   1.20 Y 
40 1 "O3'" B C  15 ? ? P     B DG 16 ? ? OP2   B DG 16 ? ? 85.40  105.20 -19.80 2.20 Y 
41 1 "O5'" B DG 16 ? ? P     B DG 16 ? ? OP1   B DG 16 ? ? 125.84 110.70 15.14  1.20 N 
42 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9    B DG 16 ? ? 111.37 108.30 3.07   0.30 N 
43 1 "O3'" B DG 16 ? ? P     B DC 17 ? ? OP2   B DC 17 ? ? 123.06 110.50 12.56  1.10 Y 
44 1 "O3'" B DG 16 ? ? P     B DC 17 ? ? OP1   B DC 17 ? ? 88.84  105.20 -16.36 2.20 Y 
45 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1    B DC 17 ? ? 112.62 108.30 4.32   0.30 N 
46 1 "O3'" B DC 17 ? ? P     B DC 18 ? ? OP2   B DC 18 ? ? 125.22 110.50 14.72  1.10 Y 
47 1 "O3'" B DC 17 ? ? P     B DC 18 ? ? OP1   B DC 18 ? ? 79.12  105.20 -26.08 2.20 Y 
48 1 "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? 94.96  102.20 -7.24  0.70 N 
49 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 111.86 108.30 3.56   0.30 N 
50 1 "O3'" B DC 18 ? ? P     B DG 19 ? ? "O5'" B DG 19 ? ? 120.27 104.00 16.27  1.90 Y 
51 1 "O3'" B DC 18 ? ? P     B DG 19 ? ? OP1   B DG 19 ? ? 83.57  105.20 -21.63 2.20 Y 
52 1 C5    B DG 19 ? ? C6    B DG 19 ? ? O6    B DG 19 ? ? 132.39 128.60 3.79   0.60 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DG A 3  ? ? 0.078 'SIDE CHAIN' 
2 1 DG A 4  ? ? 0.061 'SIDE CHAIN' 
3 1 DG B 14 ? ? 0.063 'SIDE CHAIN' 
4 1 DG B 19 ? ? 0.066 'SIDE CHAIN' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
C   OP3    O N N 1   
C   P      P N N 2   
C   OP1    O N N 3   
C   OP2    O N N 4   
C   "O5'"  O N N 5   
C   "C5'"  C N N 6   
C   "C4'"  C N R 7   
C   "O4'"  O N N 8   
C   "C3'"  C N S 9   
C   "O3'"  O N N 10  
C   "C2'"  C N R 11  
C   "O2'"  O N N 12  
C   "C1'"  C N R 13  
C   N1     N N N 14  
C   C2     C N N 15  
C   O2     O N N 16  
C   N3     N N N 17  
C   C4     C N N 18  
C   N4     N N N 19  
C   C5     C N N 20  
C   C6     C N N 21  
C   HOP3   H N N 22  
C   HOP2   H N N 23  
C   "H5'"  H N N 24  
C   "H5''" H N N 25  
C   "H4'"  H N N 26  
C   "H3'"  H N N 27  
C   "HO3'" H N N 28  
C   "H2'"  H N N 29  
C   "HO2'" H N N 30  
C   "H1'"  H N N 31  
C   H41    H N N 32  
C   H42    H N N 33  
C   H5     H N N 34  
C   H6     H N N 35  
DC  OP3    O N N 36  
DC  P      P N N 37  
DC  OP1    O N N 38  
DC  OP2    O N N 39  
DC  "O5'"  O N N 40  
DC  "C5'"  C N N 41  
DC  "C4'"  C N R 42  
DC  "O4'"  O N N 43  
DC  "C3'"  C N S 44  
DC  "O3'"  O N N 45  
DC  "C2'"  C N N 46  
DC  "C1'"  C N R 47  
DC  N1     N N N 48  
DC  C2     C N N 49  
DC  O2     O N N 50  
DC  N3     N N N 51  
DC  C4     C N N 52  
DC  N4     N N N 53  
DC  C5     C N N 54  
DC  C6     C N N 55  
DC  HOP3   H N N 56  
DC  HOP2   H N N 57  
DC  "H5'"  H N N 58  
DC  "H5''" H N N 59  
DC  "H4'"  H N N 60  
DC  "H3'"  H N N 61  
DC  "HO3'" H N N 62  
DC  "H2'"  H N N 63  
DC  "H2''" H N N 64  
DC  "H1'"  H N N 65  
DC  H41    H N N 66  
DC  H42    H N N 67  
DC  H5     H N N 68  
DC  H6     H N N 69  
DG  OP3    O N N 70  
DG  P      P N N 71  
DG  OP1    O N N 72  
DG  OP2    O N N 73  
DG  "O5'"  O N N 74  
DG  "C5'"  C N N 75  
DG  "C4'"  C N R 76  
DG  "O4'"  O N N 77  
DG  "C3'"  C N S 78  
DG  "O3'"  O N N 79  
DG  "C2'"  C N N 80  
DG  "C1'"  C N R 81  
DG  N9     N Y N 82  
DG  C8     C Y N 83  
DG  N7     N Y N 84  
DG  C5     C Y N 85  
DG  C6     C N N 86  
DG  O6     O N N 87  
DG  N1     N N N 88  
DG  C2     C N N 89  
DG  N2     N N N 90  
DG  N3     N N N 91  
DG  C4     C Y N 92  
DG  HOP3   H N N 93  
DG  HOP2   H N N 94  
DG  "H5'"  H N N 95  
DG  "H5''" H N N 96  
DG  "H4'"  H N N 97  
DG  "H3'"  H N N 98  
DG  "HO3'" H N N 99  
DG  "H2'"  H N N 100 
DG  "H2''" H N N 101 
DG  "H1'"  H N N 102 
DG  H8     H N N 103 
DG  H1     H N N 104 
DG  H21    H N N 105 
DG  H22    H N N 106 
HOH O      O N N 107 
HOH H1     H N N 108 
HOH H2     H N N 109 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C   OP3   P      sing N N 1   
C   OP3   HOP3   sing N N 2   
C   P     OP1    doub N N 3   
C   P     OP2    sing N N 4   
C   P     "O5'"  sing N N 5   
C   OP2   HOP2   sing N N 6   
C   "O5'" "C5'"  sing N N 7   
C   "C5'" "C4'"  sing N N 8   
C   "C5'" "H5'"  sing N N 9   
C   "C5'" "H5''" sing N N 10  
C   "C4'" "O4'"  sing N N 11  
C   "C4'" "C3'"  sing N N 12  
C   "C4'" "H4'"  sing N N 13  
C   "O4'" "C1'"  sing N N 14  
C   "C3'" "O3'"  sing N N 15  
C   "C3'" "C2'"  sing N N 16  
C   "C3'" "H3'"  sing N N 17  
C   "O3'" "HO3'" sing N N 18  
C   "C2'" "O2'"  sing N N 19  
C   "C2'" "C1'"  sing N N 20  
C   "C2'" "H2'"  sing N N 21  
C   "O2'" "HO2'" sing N N 22  
C   "C1'" N1     sing N N 23  
C   "C1'" "H1'"  sing N N 24  
C   N1    C2     sing N N 25  
C   N1    C6     sing N N 26  
C   C2    O2     doub N N 27  
C   C2    N3     sing N N 28  
C   N3    C4     doub N N 29  
C   C4    N4     sing N N 30  
C   C4    C5     sing N N 31  
C   N4    H41    sing N N 32  
C   N4    H42    sing N N 33  
C   C5    C6     doub N N 34  
C   C5    H5     sing N N 35  
C   C6    H6     sing N N 36  
DC  OP3   P      sing N N 37  
DC  OP3   HOP3   sing N N 38  
DC  P     OP1    doub N N 39  
DC  P     OP2    sing N N 40  
DC  P     "O5'"  sing N N 41  
DC  OP2   HOP2   sing N N 42  
DC  "O5'" "C5'"  sing N N 43  
DC  "C5'" "C4'"  sing N N 44  
DC  "C5'" "H5'"  sing N N 45  
DC  "C5'" "H5''" sing N N 46  
DC  "C4'" "O4'"  sing N N 47  
DC  "C4'" "C3'"  sing N N 48  
DC  "C4'" "H4'"  sing N N 49  
DC  "O4'" "C1'"  sing N N 50  
DC  "C3'" "O3'"  sing N N 51  
DC  "C3'" "C2'"  sing N N 52  
DC  "C3'" "H3'"  sing N N 53  
DC  "O3'" "HO3'" sing N N 54  
DC  "C2'" "C1'"  sing N N 55  
DC  "C2'" "H2'"  sing N N 56  
DC  "C2'" "H2''" sing N N 57  
DC  "C1'" N1     sing N N 58  
DC  "C1'" "H1'"  sing N N 59  
DC  N1    C2     sing N N 60  
DC  N1    C6     sing N N 61  
DC  C2    O2     doub N N 62  
DC  C2    N3     sing N N 63  
DC  N3    C4     doub N N 64  
DC  C4    N4     sing N N 65  
DC  C4    C5     sing N N 66  
DC  N4    H41    sing N N 67  
DC  N4    H42    sing N N 68  
DC  C5    C6     doub N N 69  
DC  C5    H5     sing N N 70  
DC  C6    H6     sing N N 71  
DG  OP3   P      sing N N 72  
DG  OP3   HOP3   sing N N 73  
DG  P     OP1    doub N N 74  
DG  P     OP2    sing N N 75  
DG  P     "O5'"  sing N N 76  
DG  OP2   HOP2   sing N N 77  
DG  "O5'" "C5'"  sing N N 78  
DG  "C5'" "C4'"  sing N N 79  
DG  "C5'" "H5'"  sing N N 80  
DG  "C5'" "H5''" sing N N 81  
DG  "C4'" "O4'"  sing N N 82  
DG  "C4'" "C3'"  sing N N 83  
DG  "C4'" "H4'"  sing N N 84  
DG  "O4'" "C1'"  sing N N 85  
DG  "C3'" "O3'"  sing N N 86  
DG  "C3'" "C2'"  sing N N 87  
DG  "C3'" "H3'"  sing N N 88  
DG  "O3'" "HO3'" sing N N 89  
DG  "C2'" "C1'"  sing N N 90  
DG  "C2'" "H2'"  sing N N 91  
DG  "C2'" "H2''" sing N N 92  
DG  "C1'" N9     sing N N 93  
DG  "C1'" "H1'"  sing N N 94  
DG  N9    C8     sing Y N 95  
DG  N9    C4     sing Y N 96  
DG  C8    N7     doub Y N 97  
DG  C8    H8     sing N N 98  
DG  N7    C5     sing Y N 99  
DG  C5    C6     sing N N 100 
DG  C5    C4     doub Y N 101 
DG  C6    O6     doub N N 102 
DG  C6    N1     sing N N 103 
DG  N1    C2     sing N N 104 
DG  N1    H1     sing N N 105 
DG  C2    N2     sing N N 106 
DG  C2    N3     doub N N 107 
DG  N2    H21    sing N N 108 
DG  N2    H22    sing N N 109 
DG  N3    C4     sing N N 110 
HOH O     H1     sing N N 111 
HOH O     H2     sing N N 112 
# 
_ndb_struct_conf_na.entry_id   393D 
_ndb_struct_conf_na.feature    'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 10 1_555 0.365  -0.141 0.327  -0.075  -8.449  1.503  1  A_DC1:DG20_B  A 1  ? B 20 ? 19 1 
1 A DC 2  1_555 B DG 9  1_555 0.274  -0.064 0.221  4.174   -9.597  2.554  2  A_DC2:DG19_B  A 2  ? B 19 ? 19 1 
1 A DG 3  1_555 B DC 8  1_555 -0.365 -0.157 -0.036 -3.286  -11.943 3.545  3  A_DG3:DC18_B  A 3  ? B 18 ? 19 1 
1 A DG 4  1_555 B DC 7  1_555 -0.349 -0.357 -0.241 -10.283 -14.893 -3.823 4  A_DG4:DC17_B  A 4  ? B 17 ? 19 1 
1 A C  5  1_555 B DG 6  1_555 0.048  -0.350 0.373  -7.751  -8.911  -3.783 5  A_C5:DG16_B   A 5  ? B 16 ? 19 1 
1 A DG 6  1_555 B C  5  1_555 -0.580 -0.350 0.065  1.666   -14.877 -0.129 6  A_DG6:C15_B   A 6  ? B 15 ? 19 1 
1 A DC 7  1_555 B DG 4  1_555 0.166  -0.197 -0.144 6.116   -5.901  0.405  7  A_DC7:DG14_B  A 7  ? B 14 ? 19 1 
1 A DC 8  1_555 B DG 3  1_555 0.593  -0.245 -0.124 6.612   -3.410  2.154  8  A_DC8:DG13_B  A 8  ? B 13 ? 19 1 
1 A DG 9  1_555 B DC 2  1_555 -0.335 -0.294 -0.420 -12.020 -5.354  -0.377 9  A_DG9:DC12_B  A 9  ? B 12 ? 19 1 
1 A DG 10 1_555 B DC 1  1_555 0.107  0.019  0.100  10.361  9.286   2.691  10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 10 1_555 A DC 2  1_555 B DG 9 1_555 0.636  -1.556 3.118 1.314  0.605  34.421 -2.718 -0.879 3.112 1.022  -2.219 
34.450 1 AA_DC1DC2:DG19DG20_BB  A 1 ? B 20 ? A 2  ? B 19 ? 
1 A DC 2 1_555 B DG 9  1_555 A DG 3  1_555 B DC 8 1_555 -0.075 -2.041 3.407 0.955  9.914  27.374 -6.094 0.344  2.524 20.123 -1.938 
29.097 2 AA_DC2DG3:DC18DG19_BB  A 2 ? B 19 ? A 3  ? B 18 ? 
1 A DG 3 1_555 B DC 8  1_555 A DG 4  1_555 B DC 7 1_555 -1.677 -1.627 3.462 -3.723 4.518  30.844 -3.902 2.363  3.370 8.399  6.922  
31.381 3 AA_DG3DG4:DC17DC18_BB  A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DG 4 1_555 B DC 7  1_555 A C  5  1_555 B DG 6 1_555 1.028  -1.783 3.272 -3.607 8.899  29.569 -4.877 -2.548 2.503 16.885 6.844  
31.056 4 AA_DG4C5:DG16DC17_BB   A 4 ? B 17 ? A 5  ? B 16 ? 
1 A C  5 1_555 B DG 6  1_555 A DG 6  1_555 B C  5 1_555 -0.262 -1.910 2.868 3.523  14.478 28.563 -5.367 0.939  1.686 27.137 -6.603 
32.144 5 AA_C5DG6:C15DG16_BB    A 5 ? B 16 ? A 6  ? B 15 ? 
1 A DG 6 1_555 B C  5  1_555 A DC 7  1_555 B DG 4 1_555 0.785  -1.210 3.256 0.667  6.110  33.860 -2.967 -1.227 3.013 10.385 -1.133 
34.397 6 AA_DG6DC7:DG14C15_BB   A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DC 7 1_555 B DG 4  1_555 A DC 8  1_555 B DG 3 1_555 0.089  -2.076 3.371 -0.636 4.927  27.319 -5.484 -0.336 2.955 10.324 1.332  
27.759 7 AA_DC7DC8:DG13DG14_BB  A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DC 8 1_555 B DG 3  1_555 A DG 9  1_555 B DC 2 1_555 -0.224 -2.151 4.075 1.525  0.851  25.517 -5.156 1.039  3.982 1.923  -3.447 
25.575 8 AA_DC8DG9:DC12DG13_BB  A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DG 9 1_555 B DC 2  1_555 A DG 10 1_555 B DC 1 1_555 0.183  -2.164 2.917 -0.678 -1.833 32.997 -3.522 -0.426 3.025 -3.223 1.192  
33.053 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? 
# 
_atom_sites.entry_id                    393D 
_atom_sites.fract_transf_matrix[1][1]   0.040783 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.022297 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021017 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_