data_393D # _entry.id 393D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 393D pdb_0000393d 10.2210/pdb393d/pdb RCSB UHJ073 ? ? WWPDB D_1000178857 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-01 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2016-12-14 5 'Structure model' 1 4 2017-02-01 6 'Structure model' 1 5 2017-05-03 7 'Structure model' 1 6 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Source and taxonomy' 6 6 'Structure model' 'Structure summary' 7 7 'Structure model' 'Data collection' 8 7 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' chem_comp_atom 2 7 'Structure model' chem_comp_bond 3 7 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_database_2.pdbx_DOI' 2 7 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 393D _pdbx_database_status.recvd_initial_deposition_date 1998-04-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ban, C.' 1 ? 'Sundaralingam, M.' 2 ? 'Ramakrishnan, B.' 3 ? # _citation.id primary _citation.title 'Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ban, C.' 1 ? primary 'Ramakrishnan, B.' 2 ? primary 'Sundaralingam, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') ; 3062.980 2 ? ? ? ? 2 water nat water 18.015 70 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)C(DG)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGCGCCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 C n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 C 5 5 5 C C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 C 5 15 15 C C B . n B 1 6 DG 6 16 16 DG G B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 21 21 HOH HOH A . C 2 HOH 2 23 23 HOH HOH A . C 2 HOH 3 25 25 HOH HOH A . C 2 HOH 4 27 27 HOH HOH A . C 2 HOH 5 28 28 HOH HOH A . C 2 HOH 6 29 29 HOH HOH A . C 2 HOH 7 30 30 HOH HOH A . C 2 HOH 8 31 31 HOH HOH A . C 2 HOH 9 32 32 HOH HOH A . C 2 HOH 10 33 33 HOH HOH A . C 2 HOH 11 34 34 HOH HOH A . C 2 HOH 12 35 35 HOH HOH A . C 2 HOH 13 36 36 HOH HOH A . C 2 HOH 14 39 39 HOH HOH A . C 2 HOH 15 40 40 HOH HOH A . C 2 HOH 16 44 44 HOH HOH A . C 2 HOH 17 47 47 HOH HOH A . C 2 HOH 18 48 48 HOH HOH A . C 2 HOH 19 49 49 HOH HOH A . C 2 HOH 20 50 50 HOH HOH A . C 2 HOH 21 51 51 HOH HOH A . C 2 HOH 22 54 54 HOH HOH A . C 2 HOH 23 57 57 HOH HOH A . C 2 HOH 24 60 60 HOH HOH A . C 2 HOH 25 62 62 HOH HOH A . C 2 HOH 26 65 65 HOH HOH A . C 2 HOH 27 66 66 HOH HOH A . C 2 HOH 28 67 67 HOH HOH A . C 2 HOH 29 69 69 HOH HOH A . C 2 HOH 30 70 70 HOH HOH A . C 2 HOH 31 71 71 HOH HOH A . C 2 HOH 32 73 73 HOH HOH A . C 2 HOH 33 77 77 HOH HOH A . C 2 HOH 34 80 80 HOH HOH A . C 2 HOH 35 82 82 HOH HOH A . C 2 HOH 36 84 84 HOH HOH A . C 2 HOH 37 85 85 HOH HOH A . C 2 HOH 38 87 87 HOH HOH A . C 2 HOH 39 88 88 HOH HOH A . C 2 HOH 40 89 89 HOH HOH A . C 2 HOH 41 90 90 HOH HOH A . D 2 HOH 1 22 22 HOH HOH B . D 2 HOH 2 24 24 HOH HOH B . D 2 HOH 3 26 26 HOH HOH B . D 2 HOH 4 37 37 HOH HOH B . D 2 HOH 5 38 38 HOH HOH B . D 2 HOH 6 41 41 HOH HOH B . D 2 HOH 7 42 42 HOH HOH B . D 2 HOH 8 43 43 HOH HOH B . D 2 HOH 9 45 45 HOH HOH B . D 2 HOH 10 46 46 HOH HOH B . D 2 HOH 11 52 52 HOH HOH B . D 2 HOH 12 53 53 HOH HOH B . D 2 HOH 13 55 55 HOH HOH B . D 2 HOH 14 56 56 HOH HOH B . D 2 HOH 15 58 58 HOH HOH B . D 2 HOH 16 59 59 HOH HOH B . D 2 HOH 17 61 61 HOH HOH B . D 2 HOH 18 63 63 HOH HOH B . D 2 HOH 19 64 64 HOH HOH B . D 2 HOH 20 68 68 HOH HOH B . D 2 HOH 21 72 72 HOH HOH B . D 2 HOH 22 74 74 HOH HOH B . D 2 HOH 23 75 75 HOH HOH B . D 2 HOH 24 76 76 HOH HOH B . D 2 HOH 25 78 78 HOH HOH B . D 2 HOH 26 79 79 HOH HOH B . D 2 HOH 27 81 81 HOH HOH B . D 2 HOH 28 83 83 HOH HOH B . D 2 HOH 29 86 86 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XENGEN 'data collection' . ? 1 XENGEN 'data reduction' . ? 2 X-PLOR refinement 3.2 ? 3 XENGEN 'data scaling' . ? 4 # _cell.entry_id 393D _cell.length_a 24.520 _cell.length_b 44.850 _cell.length_c 47.580 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 393D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 393D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.69 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 291.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 NA-CACODYLATE ? ? ? 1 3 1 'COBALT HEXAMINE' ? ? ? 1 4 2 WATER ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1995-06-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 393D _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 3219 _reflns.number_all ? _reflns.percent_possible_obs 96.000 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 393D _refine.ls_number_reflns_obs 2902 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 406 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 476 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.80 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 393D _pdbx_refine.R_factor_all_no_cutoff 0. _pdbx_refine.R_factor_obs_no_cutoff 0. _pdbx_refine.free_R_factor_no_cutoff 0. _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0. _pdbx_refine.R_factor_obs_4sig_cutoff 0. _pdbx_refine.free_R_factor_4sig_cutoff 0. _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM11.DNA _pdbx_xplor_file.topol_file ? _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 393D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 393D _struct.title 'CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 393D _struct_keywords.pdbx_keywords DNA/RNA _struct_keywords.text 'A-T-RNA, DOUBLE HELIX, DNA-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 393D _struct_ref.pdbx_db_accession 393D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 393D A 1 ? 10 ? 393D 1 ? 10 ? 1 10 2 1 393D B 1 ? 10 ? 393D 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A C 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A C 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A C 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B C 5 N3 ? ? A DG 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B C 5 O2 ? ? A DG 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B C 5 N4 ? ? A DG 6 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.672 1.593 0.079 0.010 N 2 1 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 1.460 1.516 -0.056 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 99.72 105.90 -6.18 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.04 108.30 3.74 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.10 121.90 -2.80 0.40 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.23 118.00 4.23 0.70 N 5 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.80 108.30 5.50 0.30 N 6 1 "O3'" A DC 2 ? ? P A DG 3 ? ? "O5'" A DG 3 ? ? 121.63 104.00 17.63 1.90 Y 7 1 "O3'" A DC 2 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 119.12 110.50 8.62 1.10 Y 8 1 "O3'" A DC 2 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 70.02 105.20 -35.18 2.20 Y 9 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.83 108.30 4.53 0.30 N 10 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 128.04 119.70 8.34 1.20 Y 11 1 "O3'" A DG 3 ? ? P A DG 4 ? ? "O5'" A DG 4 ? ? 88.51 104.00 -15.49 1.90 Y 12 1 "O3'" A DG 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 85.31 105.20 -19.89 2.20 Y 13 1 "O3'" A DG 3 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 130.30 110.50 19.80 1.10 Y 14 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 118.32 110.70 7.62 1.20 N 15 1 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 117.76 108.50 9.26 0.70 N 16 1 N1 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 123.22 118.90 4.32 0.60 N 17 1 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 116.22 121.90 -5.68 0.70 N 18 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 96.80 102.20 -5.40 0.70 N 19 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.64 108.30 3.34 0.30 N 20 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 116.42 108.30 8.12 0.30 N 21 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DC 8 ? ? 111.68 119.70 -8.02 1.20 Y 22 1 "O3'" A DC 7 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 121.17 110.50 10.67 1.10 Y 23 1 "O3'" A DC 7 ? ? P A DC 8 ? ? OP1 A DC 8 ? ? 87.58 105.20 -17.62 2.20 Y 24 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? "C2'" A DC 8 ? ? 96.44 102.20 -5.76 0.70 N 25 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 123.95 118.90 5.05 0.60 N 26 1 N3 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 117.19 121.90 -4.71 0.70 N 27 1 "O3'" A DC 8 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 127.84 110.50 17.34 1.10 Y 28 1 "O3'" A DC 8 ? ? P A DG 9 ? ? OP1 A DG 9 ? ? 88.09 105.20 -17.11 2.20 Y 29 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.25 108.30 1.95 0.30 N 30 1 "O3'" A DG 9 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 121.40 110.50 10.90 1.10 Y 31 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.75 108.30 4.45 0.30 N 32 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.78 108.30 2.48 0.30 N 33 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 123.31 118.90 4.41 0.60 N 34 1 "O3'" B DC 12 ? ? P B DG 13 ? ? "O5'" B DG 13 ? ? 121.24 104.00 17.24 1.90 Y 35 1 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 96.56 102.20 -5.64 0.70 N 36 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.77 108.30 2.47 0.30 N 37 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 112.05 108.30 3.75 0.30 N 38 1 N1 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 122.97 118.90 4.07 0.60 N 39 1 "C3'" B C 15 ? ? "O3'" B C 15 ? ? P B DG 16 ? ? 126.91 119.70 7.21 1.20 Y 40 1 "O3'" B C 15 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 85.40 105.20 -19.80 2.20 Y 41 1 "O5'" B DG 16 ? ? P B DG 16 ? ? OP1 B DG 16 ? ? 125.84 110.70 15.14 1.20 N 42 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.37 108.30 3.07 0.30 N 43 1 "O3'" B DG 16 ? ? P B DC 17 ? ? OP2 B DC 17 ? ? 123.06 110.50 12.56 1.10 Y 44 1 "O3'" B DG 16 ? ? P B DC 17 ? ? OP1 B DC 17 ? ? 88.84 105.20 -16.36 2.20 Y 45 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 112.62 108.30 4.32 0.30 N 46 1 "O3'" B DC 17 ? ? P B DC 18 ? ? OP2 B DC 18 ? ? 125.22 110.50 14.72 1.10 Y 47 1 "O3'" B DC 17 ? ? P B DC 18 ? ? OP1 B DC 18 ? ? 79.12 105.20 -26.08 2.20 Y 48 1 "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? 94.96 102.20 -7.24 0.70 N 49 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.86 108.30 3.56 0.30 N 50 1 "O3'" B DC 18 ? ? P B DG 19 ? ? "O5'" B DG 19 ? ? 120.27 104.00 16.27 1.90 Y 51 1 "O3'" B DC 18 ? ? P B DG 19 ? ? OP1 B DG 19 ? ? 83.57 105.20 -21.63 2.20 Y 52 1 C5 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 132.39 128.60 3.79 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 3 ? ? 0.078 'SIDE CHAIN' 2 1 DG A 4 ? ? 0.061 'SIDE CHAIN' 3 1 DG B 14 ? ? 0.063 'SIDE CHAIN' 4 1 DG B 19 ? ? 0.066 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 DC OP3 O N N 36 DC P P N N 37 DC OP1 O N N 38 DC OP2 O N N 39 DC "O5'" O N N 40 DC "C5'" C N N 41 DC "C4'" C N R 42 DC "O4'" O N N 43 DC "C3'" C N S 44 DC "O3'" O N N 45 DC "C2'" C N N 46 DC "C1'" C N R 47 DC N1 N N N 48 DC C2 C N N 49 DC O2 O N N 50 DC N3 N N N 51 DC C4 C N N 52 DC N4 N N N 53 DC C5 C N N 54 DC C6 C N N 55 DC HOP3 H N N 56 DC HOP2 H N N 57 DC "H5'" H N N 58 DC "H5''" H N N 59 DC "H4'" H N N 60 DC "H3'" H N N 61 DC "HO3'" H N N 62 DC "H2'" H N N 63 DC "H2''" H N N 64 DC "H1'" H N N 65 DC H41 H N N 66 DC H42 H N N 67 DC H5 H N N 68 DC H6 H N N 69 DG OP3 O N N 70 DG P P N N 71 DG OP1 O N N 72 DG OP2 O N N 73 DG "O5'" O N N 74 DG "C5'" C N N 75 DG "C4'" C N R 76 DG "O4'" O N N 77 DG "C3'" C N S 78 DG "O3'" O N N 79 DG "C2'" C N N 80 DG "C1'" C N R 81 DG N9 N Y N 82 DG C8 C Y N 83 DG N7 N Y N 84 DG C5 C Y N 85 DG C6 C N N 86 DG O6 O N N 87 DG N1 N N N 88 DG C2 C N N 89 DG N2 N N N 90 DG N3 N N N 91 DG C4 C Y N 92 DG HOP3 H N N 93 DG HOP2 H N N 94 DG "H5'" H N N 95 DG "H5''" H N N 96 DG "H4'" H N N 97 DG "H3'" H N N 98 DG "HO3'" H N N 99 DG "H2'" H N N 100 DG "H2''" H N N 101 DG "H1'" H N N 102 DG H8 H N N 103 DG H1 H N N 104 DG H21 H N N 105 DG H22 H N N 106 HOH O O N N 107 HOH H1 H N N 108 HOH H2 H N N 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 DC OP3 P sing N N 37 DC OP3 HOP3 sing N N 38 DC P OP1 doub N N 39 DC P OP2 sing N N 40 DC P "O5'" sing N N 41 DC OP2 HOP2 sing N N 42 DC "O5'" "C5'" sing N N 43 DC "C5'" "C4'" sing N N 44 DC "C5'" "H5'" sing N N 45 DC "C5'" "H5''" sing N N 46 DC "C4'" "O4'" sing N N 47 DC "C4'" "C3'" sing N N 48 DC "C4'" "H4'" sing N N 49 DC "O4'" "C1'" sing N N 50 DC "C3'" "O3'" sing N N 51 DC "C3'" "C2'" sing N N 52 DC "C3'" "H3'" sing N N 53 DC "O3'" "HO3'" sing N N 54 DC "C2'" "C1'" sing N N 55 DC "C2'" "H2'" sing N N 56 DC "C2'" "H2''" sing N N 57 DC "C1'" N1 sing N N 58 DC "C1'" "H1'" sing N N 59 DC N1 C2 sing N N 60 DC N1 C6 sing N N 61 DC C2 O2 doub N N 62 DC C2 N3 sing N N 63 DC N3 C4 doub N N 64 DC C4 N4 sing N N 65 DC C4 C5 sing N N 66 DC N4 H41 sing N N 67 DC N4 H42 sing N N 68 DC C5 C6 doub N N 69 DC C5 H5 sing N N 70 DC C6 H6 sing N N 71 DG OP3 P sing N N 72 DG OP3 HOP3 sing N N 73 DG P OP1 doub N N 74 DG P OP2 sing N N 75 DG P "O5'" sing N N 76 DG OP2 HOP2 sing N N 77 DG "O5'" "C5'" sing N N 78 DG "C5'" "C4'" sing N N 79 DG "C5'" "H5'" sing N N 80 DG "C5'" "H5''" sing N N 81 DG "C4'" "O4'" sing N N 82 DG "C4'" "C3'" sing N N 83 DG "C4'" "H4'" sing N N 84 DG "O4'" "C1'" sing N N 85 DG "C3'" "O3'" sing N N 86 DG "C3'" "C2'" sing N N 87 DG "C3'" "H3'" sing N N 88 DG "O3'" "HO3'" sing N N 89 DG "C2'" "C1'" sing N N 90 DG "C2'" "H2'" sing N N 91 DG "C2'" "H2''" sing N N 92 DG "C1'" N9 sing N N 93 DG "C1'" "H1'" sing N N 94 DG N9 C8 sing Y N 95 DG N9 C4 sing Y N 96 DG C8 N7 doub Y N 97 DG C8 H8 sing N N 98 DG N7 C5 sing Y N 99 DG C5 C6 sing N N 100 DG C5 C4 doub Y N 101 DG C6 O6 doub N N 102 DG C6 N1 sing N N 103 DG N1 C2 sing N N 104 DG N1 H1 sing N N 105 DG C2 N2 sing N N 106 DG C2 N3 doub N N 107 DG N2 H21 sing N N 108 DG N2 H22 sing N N 109 DG N3 C4 sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 # _ndb_struct_conf_na.entry_id 393D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.365 -0.141 0.327 -0.075 -8.449 1.503 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.274 -0.064 0.221 4.174 -9.597 2.554 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.365 -0.157 -0.036 -3.286 -11.943 3.545 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.349 -0.357 -0.241 -10.283 -14.893 -3.823 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A C 5 1_555 B DG 6 1_555 0.048 -0.350 0.373 -7.751 -8.911 -3.783 5 A_C5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B C 5 1_555 -0.580 -0.350 0.065 1.666 -14.877 -0.129 6 A_DG6:C15_B A 6 ? B 15 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.166 -0.197 -0.144 6.116 -5.901 0.405 7 A_DC7:DG14_B A 7 ? B 14 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.593 -0.245 -0.124 6.612 -3.410 2.154 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.335 -0.294 -0.420 -12.020 -5.354 -0.377 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 0.107 0.019 0.100 10.361 9.286 2.691 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.636 -1.556 3.118 1.314 0.605 34.421 -2.718 -0.879 3.112 1.022 -2.219 34.450 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.075 -2.041 3.407 0.955 9.914 27.374 -6.094 0.344 2.524 20.123 -1.938 29.097 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -1.677 -1.627 3.462 -3.723 4.518 30.844 -3.902 2.363 3.370 8.399 6.922 31.381 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A C 5 1_555 B DG 6 1_555 1.028 -1.783 3.272 -3.607 8.899 29.569 -4.877 -2.548 2.503 16.885 6.844 31.056 4 AA_DG4C5:DG16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A C 5 1_555 B DG 6 1_555 A DG 6 1_555 B C 5 1_555 -0.262 -1.910 2.868 3.523 14.478 28.563 -5.367 0.939 1.686 27.137 -6.603 32.144 5 AA_C5DG6:C15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B C 5 1_555 A DC 7 1_555 B DG 4 1_555 0.785 -1.210 3.256 0.667 6.110 33.860 -2.967 -1.227 3.013 10.385 -1.133 34.397 6 AA_DG6DC7:DG14C15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 0.089 -2.076 3.371 -0.636 4.927 27.319 -5.484 -0.336 2.955 10.324 1.332 27.759 7 AA_DC7DC8:DG13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.224 -2.151 4.075 1.525 0.851 25.517 -5.156 1.039 3.982 1.923 -3.447 25.575 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.183 -2.164 2.917 -0.678 -1.833 32.997 -3.522 -0.426 3.025 -3.223 1.192 33.053 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 393D _atom_sites.fract_transf_matrix[1][1] 0.040783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022297 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021017 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_