HEADER HYDROLASE 13-OCT-26 39JO TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE MODEL OF LACTOCOCCUS LACTIS PROLIDASE TITLE 2 MUTANT DEL101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE M24 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLIDASE,XAA-PRO DIPEPTIDASE,XAA-PRO PEPTIDASE FAMILY COMPND 5 PROTEIN; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; SOURCE 3 ORGANISM_TAXID: 1360; SOURCE 4 GENE: PEPQ, AMHIJAGA_00052, B8W88_04220, QUD52_07525, RZO27_02460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS XAA-PRO DIPEPTIDASE, IMIDODIPEPTIDASE, DIPEPTIDASE, METALLOPROTEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.XU,P.GROCHULSKI,T.TANAKA REVDAT 1 04-NOV-26 39JO 0 JRNL AUTH S.XU,P.GROCHULSKI,T.TANAKA JRNL TITL STRUCTURAL BASIS FOR THE ALLOSTERIC BEHAVIOUR AND SUBSTRATE JRNL TITL 2 SPECIFICITY OF LACTOCOCCUS LACTIS PROLIDASE JRNL REF BIOCHIMICA ET BIOPHYSICA V.1872 2024 JRNL REF 2 ACTA (BBA) - PROTEINS AND JRNL REF 3 PROTEOMICS REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 87998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.370 REMARK 3 FREE R VALUE TEST SET COUNT : 3848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0500 - 5.2500 1.00 3204 145 0.1749 0.2197 REMARK 3 2 5.2500 - 4.1700 1.00 3205 150 0.1127 0.1263 REMARK 3 3 4.1700 - 3.6400 1.00 3190 148 0.1195 0.1658 REMARK 3 4 3.6400 - 3.3100 1.00 3209 148 0.1317 0.1539 REMARK 3 5 3.3100 - 3.0700 1.00 3190 144 0.1316 0.1820 REMARK 3 6 3.0700 - 2.8900 1.00 3183 141 0.1495 0.2068 REMARK 3 7 2.8900 - 2.7400 1.00 3206 155 0.1503 0.1843 REMARK 3 8 2.7400 - 2.6200 1.00 3208 150 0.1493 0.1918 REMARK 3 9 2.6200 - 2.5200 1.00 3178 142 0.1492 0.1687 REMARK 3 10 2.5200 - 2.4400 1.00 3223 149 0.1403 0.1570 REMARK 3 11 2.4400 - 2.3600 1.00 3196 145 0.1417 0.1741 REMARK 3 12 2.3600 - 2.2900 1.00 3193 143 0.1443 0.1695 REMARK 3 13 2.2900 - 2.2300 1.00 3185 151 0.1545 0.2156 REMARK 3 14 2.2300 - 2.1800 1.00 3206 138 0.1627 0.2099 REMARK 3 15 2.1800 - 2.1300 1.00 3212 154 0.1733 0.2208 REMARK 3 16 2.1300 - 2.0800 1.00 3183 144 0.1765 0.2315 REMARK 3 17 2.0800 - 2.0400 1.00 3209 143 0.1838 0.2094 REMARK 3 18 2.0400 - 2.0000 1.00 3161 147 0.1930 0.2484 REMARK 3 19 2.0000 - 1.9700 1.00 3219 144 0.1996 0.2107 REMARK 3 20 1.9700 - 1.9300 1.00 3206 140 0.2209 0.2661 REMARK 3 21 1.9300 - 1.9000 1.00 3240 148 0.2540 0.2973 REMARK 3 22 1.9000 - 1.8700 1.00 3183 141 0.2729 0.2779 REMARK 3 23 1.8700 - 1.8500 0.96 3049 138 0.2853 0.2958 REMARK 3 24 1.8500 - 1.8200 0.91 2918 139 0.3126 0.3390 REMARK 3 25 1.8200 - 1.8000 0.86 2764 125 0.3227 0.3685 REMARK 3 26 1.8000 - 1.7700 0.81 2544 124 0.3511 0.3822 REMARK 3 27 1.7700 - 1.7500 0.76 2486 112 0.3679 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.545 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2930 REMARK 3 ANGLE : 0.728 3960 REMARK 3 CHIRALITY : 0.051 440 REMARK 3 PLANARITY : 0.006 522 REMARK 3 DIHEDRAL : 17.393 1087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7515 35.6288 -50.6145 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.1485 REMARK 3 T33: 0.2220 T12: -0.0012 REMARK 3 T13: 0.0018 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.2679 L22: 2.8238 REMARK 3 L33: 1.0017 L12: 0.1076 REMARK 3 L13: 0.7958 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.0141 S13: 0.2626 REMARK 3 S21: -0.1526 S22: 0.0059 S23: 0.3742 REMARK 3 S31: 0.0508 S32: -0.0359 S33: 0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3548 19.2361 -22.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.1893 REMARK 3 T33: 0.1894 T12: -0.0051 REMARK 3 T13: -0.0046 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9901 L22: 1.2250 REMARK 3 L33: 1.1258 L12: -0.0357 REMARK 3 L13: -0.2377 L23: -0.3114 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0206 S13: -0.0255 REMARK 3 S21: 0.0377 S22: -0.0415 S23: 0.0366 REMARK 3 S31: 0.0144 S32: 0.0606 S33: 0.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 39JO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-26. REMARK 100 THE DEPOSITION ID IS D_1000311806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CALCIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, 15-20% W/V PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.64500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.13000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -65.95000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 975 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A -4 CG1 CG2 CD1 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 38 -110.32 56.25 REMARK 500 HIS A 38 -111.22 59.41 REMARK 500 ASP A 49 48.20 -146.24 REMARK 500 ARG A 163 -129.19 49.73 REMARK 500 LYS A 332 -57.51 -121.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1119 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 220 OD2 55.9 REMARK 620 3 ASP A 231 OD1 96.1 150.5 REMARK 620 4 GLU A 338 OE1 99.7 105.1 87.1 REMARK 620 5 HOH A 504 O 145.8 90.0 118.0 85.8 REMARK 620 6 HOH A 874 O 94.6 84.9 89.1 165.5 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD2 REMARK 620 2 HIS A 295 NE2 92.2 REMARK 620 3 GLU A 324 OE2 157.6 85.4 REMARK 620 4 GLU A 338 OE2 82.9 121.7 79.5 REMARK 620 5 HOH A 504 O 105.1 151.6 86.6 83.3 REMARK 620 6 HOH A 604 O 93.7 82.2 108.0 155.8 74.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZNG RELATED DB: PDB REMARK 900 WT ENZYME REMARK 900 RELATED ID: 6XMR RELATED DB: PDB REMARK 900 H38S MUTANT OF THE ENZYME DBREF 39JO A 1 361 UNP A8WBX8 A8WBX8_9LACT 1 362 SEQADV 39JO ILE A -4 UNP A8WBX8 EXPRESSION TAG SEQADV 39JO GLY A -3 UNP A8WBX8 EXPRESSION TAG SEQADV 39JO SER A -2 UNP A8WBX8 EXPRESSION TAG SEQADV 39JO GLU A -1 UNP A8WBX8 EXPRESSION TAG SEQADV 39JO PHE A 0 UNP A8WBX8 EXPRESSION TAG SEQADV 39JO A UNP A8WBX8 PHE 101 DELETION SEQRES 1 A 366 ILE GLY SER GLU PHE MET SER LYS ILE GLU ARG ILE SER SEQRES 2 A 366 ALA PHE LEU ASN ASP LYS GLU VAL ASP MET THR PHE ILE SEQRES 3 A 366 THR ASN PRO THR THR LEU ASN TYR LEU THR GLY LEU ALA SEQRES 4 A 366 ILE ASP PRO HIS GLU ARG ILE ALA GLY LEU MET ILE PHE SEQRES 5 A 366 ARG ASP SER THR PRO MET LEU PHE THR PRO ALA LEU GLU SEQRES 6 A 366 VAL GLU LYS ALA LYS GLU HIS THR SER GLY LEU ASP ILE SEQRES 7 A 366 PHE GLY TYR GLU ASP SER GLN ASN PRO TRP GLU VAL VAL SEQRES 8 A 366 LYS ASN HIS VAL LYS SER ASP VAL LYS SER ILE ALA VAL SEQRES 9 A 366 GLU SER ASP ILE PRO LEU ALA LYS THR GLU GLY LEU LYS SEQRES 10 A 366 ALA GLN PHE GLY ASP ILE ASN PHE VAL ASN LEU THR PRO SEQRES 11 A 366 LEU ILE GLU ARG MET ARG LEU ILE LYS SER ALA ASP GLU SEQRES 12 A 366 ILE GLU LYS MET LYS VAL ALA GLY ASP PHE ALA ASP LYS SEQRES 13 A 366 CYS PHE GLU ILE GLY PHE ALA THR ALA ALA GLU ARG ASN SEQRES 14 A 366 GLY VAL THR GLU SER ASP ILE VAL ALA LYS ILE GLU TYR SEQRES 15 A 366 GLU MET LYS ARG MET GLY VAL PRO GLN MET SER PHE ASP SEQRES 16 A 366 THR LEU VAL LEU SER GLY ALA ARG ALA ALA ASN PRO HIS SEQRES 17 A 366 GLY ALA PRO GLU ASN VAL GLU ILE GLN GLU ASN LYS LEU SEQRES 18 A 366 LEU LEU PHE ASP LEU GLY VAL MET SER GLY GLY TYR ALA SEQRES 19 A 366 SER ASP ALA THR ARG THR ILE ALA ILE GLY GLN PRO ASN SEQRES 20 A 366 ASP PHE ASP ALA GLU ILE HIS LYS ILE VAL LYS GLU ALA SEQRES 21 A 366 GLN GLN ALA ALA MET ASP PHE ILE LYS PRO GLY VAL THR SEQRES 22 A 366 ALA HIS GLU VAL ASP ALA VAL ALA ARG ASP LEU ILE THR SEQRES 23 A 366 LYS ALA GLY TYR GLY GLU TYR PHE ASN HIS ARG LEU GLY SEQRES 24 A 366 HIS GLY ILE GLY MET ASP VAL HIS GLU TYR PRO SER ILE SEQRES 25 A 366 VAL ALA GLY ASN ASP LEU VAL ILE GLN GLU GLY MET CYS SEQRES 26 A 366 PHE SER ASN GLU PRO GLY ILE TYR ILE PRO GLY LYS VAL SEQRES 27 A 366 GLY VAL ARG ILE GLU ASP CYS LEU TYR VAL THR GLU ASN SEQRES 28 A 366 GLY CYS GLU SER PHE THR HIS THR ASP HIS ASP LEU LEU SEQRES 29 A 366 ILE PHE HET MN A 401 1 HET MN A 402 1 HET P6G A 403 45 HET ACT A 404 7 HETNAM MN MANGANESE (II) ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 MN 2(MN 2+) FORMUL 4 P6G C12 H26 O7 FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *619(H2 O) HELIX 1 AA1 SER A -2 GLU A 15 1 18 HELIX 2 AA2 ASN A 23 GLY A 32 1 10 HELIX 3 AA3 GLU A 60 THR A 68 1 9 HELIX 4 AA4 ASN A 81 VAL A 90 1 10 HELIX 5 AA5 PRO A 104 GLY A 116 1 13 HELIX 6 AA6 LEU A 123 LEU A 132 1 10 HELIX 7 AA7 SER A 135 GLU A 162 1 28 HELIX 8 AA8 THR A 167 MET A 182 1 16 HELIX 9 AA9 ALA A 197 ASN A 201 5 5 HELIX 10 AB1 ASN A 242 ILE A 263 1 22 HELIX 11 AB2 THR A 268 ALA A 283 1 16 HELIX 12 AB3 TYR A 285 PHE A 289 5 5 SHEET 1 AA1 3 MET A 18 THR A 19 0 SHEET 2 AA1 3 SER A 96 VAL A 99 1 O ALA A 98 N MET A 18 SHEET 3 AA1 3 ASN A 119 ASN A 122 1 O VAL A 121 N VAL A 99 SHEET 1 AA2 3 GLY A 43 MET A 45 0 SHEET 2 AA2 3 MET A 53 PRO A 57 -1 O MET A 53 N MET A 45 SHEET 3 AA2 3 ASP A 72 TYR A 76 1 O ASP A 72 N LEU A 54 SHEET 1 AA3 4 LEU A 192 SER A 195 0 SHEET 2 AA3 4 LYS A 215 LEU A 221 -1 O ASP A 220 N LEU A 192 SHEET 3 AA3 4 ALA A 232 ILE A 238 -1 O ARG A 234 N PHE A 219 SHEET 4 AA3 4 ILE A 360 PHE A 361 1 O PHE A 361 N ALA A 237 SHEET 1 AA4 2 MET A 224 SER A 225 0 SHEET 2 AA4 2 TYR A 228 ALA A 229 -1 O TYR A 228 N SER A 225 SHEET 1 AA5 2 GLY A 294 GLY A 296 0 SHEET 2 AA5 2 GLU A 303 ILE A 307 -1 O ILE A 307 N GLY A 294 SHEET 1 AA6 3 CYS A 320 ASN A 323 0 SHEET 2 AA6 3 ASP A 339 VAL A 343 -1 O ASP A 339 N ASN A 323 SHEET 3 AA6 3 CYS A 348 SER A 350 -1 O GLU A 349 N TYR A 342 SHEET 1 AA7 2 GLY A 326 ILE A 329 0 SHEET 2 AA7 2 VAL A 333 ARG A 336 -1 O VAL A 333 N ILE A 329 LINK OD1 ASP A 220 MN MN A 402 1555 1555 2.12 LINK OD2 ASP A 220 MN MN A 402 1555 1555 2.50 LINK OD2 ASP A 231 MN MN A 401 1555 1555 2.19 LINK OD1 ASP A 231 MN MN A 402 1555 1555 2.09 LINK NE2 HIS A 295 MN MN A 401 1555 1555 2.19 LINK OE2 GLU A 324 MN MN A 401 1555 1555 2.33 LINK OE2 GLU A 338 MN MN A 401 1555 1555 2.18 LINK OE1 GLU A 338 MN MN A 402 1555 1555 2.20 LINK MN MN A 401 O HOH A 504 1555 1555 2.24 LINK MN MN A 401 O HOH A 604 1555 1555 2.24 LINK MN MN A 402 O HOH A 504 1555 1555 2.23 LINK MN MN A 402 O HOH A 874 1555 1555 2.34 CISPEP 1 TYR A 304 PRO A 305 0 4.39 CRYST1 83.290 84.130 131.900 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007582 0.00000 CONECT 3501 5636 CONECT 3502 5636 CONECT 3639 5636 CONECT 3640 5635 CONECT 4630 5635 CONECT 5057 5635 CONECT 5276 5636 CONECT 5277 5635 CONECT 5635 3640 4630 5057 5277 CONECT 5635 5692 5792 CONECT 5636 3501 3502 3639 5276 CONECT 5636 5692 6062 CONECT 5637 5638 5656 CONECT 5638 5637 5639 5657 5658 CONECT 5639 5638 5640 5659 5660 CONECT 5640 5639 5641 CONECT 5641 5640 5642 5661 5662 CONECT 5642 5641 5643 5663 5664 CONECT 5643 5642 5644 CONECT 5644 5643 5645 5665 5666 CONECT 5645 5644 5646 5667 5668 CONECT 5646 5645 5647 CONECT 5647 5646 5648 5669 5670 CONECT 5648 5647 5649 5671 5672 CONECT 5649 5648 5650 CONECT 5650 5649 5651 5673 5674 CONECT 5651 5650 5652 5675 5676 CONECT 5652 5651 5653 CONECT 5653 5652 5654 5677 5678 CONECT 5654 5653 5655 5679 5680 CONECT 5655 5654 5681 CONECT 5656 5637 CONECT 5657 5638 CONECT 5658 5638 CONECT 5659 5639 CONECT 5660 5639 CONECT 5661 5641 CONECT 5662 5641 CONECT 5663 5642 CONECT 5664 5642 CONECT 5665 5644 CONECT 5666 5644 CONECT 5667 5645 CONECT 5668 5645 CONECT 5669 5647 CONECT 5670 5647 CONECT 5671 5648 CONECT 5672 5648 CONECT 5673 5650 CONECT 5674 5650 CONECT 5675 5651 CONECT 5676 5651 CONECT 5677 5653 CONECT 5678 5653 CONECT 5679 5654 CONECT 5680 5654 CONECT 5681 5655 CONECT 5682 5683 5684 5685 CONECT 5683 5682 CONECT 5684 5682 CONECT 5685 5682 5686 5687 5688 CONECT 5686 5685 CONECT 5687 5685 CONECT 5688 5685 CONECT 5692 5635 5636 CONECT 5792 5635 CONECT 6062 5636 MASTER 355 0 4 12 19 0 0 6 3470 1 67 29 END