HEADER ANTIVIRAL PROTEIN 04-MAR-09 3A07 TITLE CRYSTAL STRUCTURE OF ACTINOHIVIN; POTENT ANTI-HIV PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTINOHIVIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-160 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMYCETE; SOURCE 3 ORGANISM_COMMON: LONGISPORA ALBIDA; SOURCE 4 ORGANISM_TAXID: 237531; SOURCE 5 STRAIN: K97-0003 KEYWDS CARBOHYDRATE-BINDING MODULE FAMILY 13, ANTIVIRAL PROTEIN, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR M.TSUNODA,K.SUZUKI,T.SAGARA,A.TAKENAKA REVDAT 4 11-OCT-17 3A07 1 REMARK REVDAT 3 13-JUL-11 3A07 1 VERSN REVDAT 2 06-OCT-09 3A07 1 JRNL REVDAT 1 25-AUG-09 3A07 0 JRNL AUTH H.TANAKA,H.CHIBA,J.INOKOSHI,A.KUNO,T.SUGAI,A.TAKAHASHI, JRNL AUTH 2 Y.ITO,M.TSUNODA,K.SUZUKI,A.TAKENAKA,T.SEKIGUCHI,H.UMEYAMA, JRNL AUTH 3 J.HIRABAYASHI,S.OMURA JRNL TITL MECHANISM BY WHICH THE LECTIN ACTINOHIVIN BLOCKS HIV JRNL TITL 2 INFECTION OF TARGET CELLS JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 15633 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19717426 JRNL DOI 10.1073/PNAS.0907572106 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 67142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 8.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.952 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1871 ; 0.029 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2555 ; 2.223 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 5.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;31.009 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;10.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1540 ; 0.019 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1144 ; 1.192 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1817 ; 1.876 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 727 ; 2.601 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 738 ; 3.713 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1397 26.0965 55.5505 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.0117 REMARK 3 T33: 0.0040 T12: -0.0033 REMARK 3 T13: 0.0024 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9109 L22: 1.0244 REMARK 3 L33: 0.9661 L12: 0.1367 REMARK 3 L13: -0.2668 L23: -0.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.0494 S13: -0.0304 REMARK 3 S21: -0.0500 S22: 0.0143 S23: 0.0152 REMARK 3 S31: 0.0184 S32: -0.0068 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8499 16.9341 76.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0039 REMARK 3 T33: 0.0022 T12: -0.0033 REMARK 3 T13: 0.0040 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6585 L22: 0.5864 REMARK 3 L33: 0.5240 L12: 0.0935 REMARK 3 L13: 0.0230 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0137 S13: -0.0182 REMARK 3 S21: 0.0294 S22: -0.0159 S23: 0.0090 REMARK 3 S31: -0.0081 S32: -0.0067 S33: 0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3A07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000028646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07117 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5650 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-ETHOXYEHANOL, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.64800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.64800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.67300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.81650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.67300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.81650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.64800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.67300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.81650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.64800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.67300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 25.81650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 189 O HOH B 299 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 45 O HOH B 264 7545 1.94 REMARK 500 O HOH B 189 O HOH B 189 4566 2.05 REMARK 500 O HOH B 31 O HOH B 289 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 49 CB VAL A 49 CG2 -0.136 REMARK 500 TYR A 116 CE1 TYR A 116 CZ -0.079 REMARK 500 TYR B 102 CZ TYR B 102 CE2 -0.096 REMARK 500 TYR B 102 CE2 TYR B 102 CD2 0.132 REMARK 500 TYR B 116 CE2 TYR B 116 CD2 0.090 REMARK 500 GLU B 131 CD GLU B 131 OE2 0.070 REMARK 500 TYR B 154 CZ TYR B 154 CE2 -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 64 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 126 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 80 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR B 102 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 126 0.06 SIDE CHAIN REMARK 500 TYR B 154 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 2 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 51 N REMARK 620 2 LEU A 60 O 140.9 REMARK 620 3 GLN A 79 O 111.4 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 3 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 89 N REMARK 620 2 LEU A 98 O 138.8 REMARK 620 3 GLN A 117 O 106.0 91.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 127 N REMARK 620 2 LEU A 136 O 143.3 REMARK 620 3 GLN A 155 O 112.8 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 6 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 51 N REMARK 620 2 LEU B 60 O 140.6 REMARK 620 3 GLN B 79 O 110.7 93.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 4 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 89 N REMARK 620 2 LEU B 98 O 138.2 REMARK 620 3 GLN B 117 O 105.0 91.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 5 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 127 N REMARK 620 2 LEU B 136 O 142.6 REMARK 620 3 GLN B 155 O 112.1 95.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 6 DBREF 3A07 A 43 160 UNP Q9KWN0 AHV_ACTSK 43 160 DBREF 3A07 B 43 160 UNP Q9KWN0 AHV_ACTSK 43 160 SEQRES 1 A 118 SER ALA GLN PHE ALA SER VAL THR ILE ARG ASN ALA GLN SEQRES 2 A 118 THR GLY ARG LEU LEU ASP SER ASN TYR ASN GLY ASN VAL SEQRES 3 A 118 TYR THR LEU PRO ALA ASN GLY GLY ASN TYR GLN ARG TRP SEQRES 4 A 118 THR GLY PRO GLY ASP GLY THR VAL ARG ASN ALA GLN THR SEQRES 5 A 118 GLY ARG CYS LEU ASP SER ASN TYR ASP GLY ALA VAL TYR SEQRES 6 A 118 THR LEU PRO CYS ASN GLY GLY SER TYR GLN LYS TRP LEU SEQRES 7 A 118 PHE TYR SER ASN GLY TYR ILE GLN ASN VAL GLU THR GLY SEQRES 8 A 118 ARG VAL LEU ASP SER ASN TYR ASN GLY ASN VAL TYR THR SEQRES 9 A 118 LEU PRO ALA ASN GLY GLY ASN TYR GLN LYS TRP TYR THR SEQRES 10 A 118 GLY SEQRES 1 B 118 SER ALA GLN PHE ALA SER VAL THR ILE ARG ASN ALA GLN SEQRES 2 B 118 THR GLY ARG LEU LEU ASP SER ASN TYR ASN GLY ASN VAL SEQRES 3 B 118 TYR THR LEU PRO ALA ASN GLY GLY ASN TYR GLN ARG TRP SEQRES 4 B 118 THR GLY PRO GLY ASP GLY THR VAL ARG ASN ALA GLN THR SEQRES 5 B 118 GLY ARG CYS LEU ASP SER ASN TYR ASP GLY ALA VAL TYR SEQRES 6 B 118 THR LEU PRO CYS ASN GLY GLY SER TYR GLN LYS TRP LEU SEQRES 7 B 118 PHE TYR SER ASN GLY TYR ILE GLN ASN VAL GLU THR GLY SEQRES 8 B 118 ARG VAL LEU ASP SER ASN TYR ASN GLY ASN VAL TYR THR SEQRES 9 B 118 LEU PRO ALA ASN GLY GLY ASN TYR GLN LYS TRP TYR THR SEQRES 10 B 118 GLY HET NA A 1 1 HET NA A 2 1 HET NA A 3 1 HET NA B 4 1 HET NA B 5 1 HET NA B 6 1 HETNAM NA SODIUM ION FORMUL 3 NA 6(NA 1+) FORMUL 9 HOH *317(H2 O) HELIX 1 1 GLY A 76 GLN A 79 5 4 HELIX 2 2 GLY A 114 GLN A 117 5 4 HELIX 3 3 GLY A 152 GLN A 155 5 4 HELIX 4 4 GLY B 76 GLN B 79 5 4 HELIX 5 5 GLY B 114 GLN B 117 5 4 HELIX 6 6 GLY B 152 GLN B 155 5 4 SHEET 1 A 3 PHE A 46 VAL A 49 0 SHEET 2 A 3 TRP A 81 GLY A 83 -1 O GLY A 83 N PHE A 46 SHEET 3 A 3 ARG A 90 ASN A 91 -1 O ARG A 90 N THR A 82 SHEET 1 B 2 ILE A 51 ASN A 53 0 SHEET 2 B 2 TRP A 157 THR A 159 -1 O TYR A 158 N ARG A 52 SHEET 1 C 2 LEU A 59 SER A 62 0 SHEET 2 C 2 VAL A 68 LEU A 71 -1 O LEU A 71 N LEU A 59 SHEET 1 D 2 CYS A 97 SER A 100 0 SHEET 2 D 2 VAL A 106 LEU A 109 -1 O LEU A 109 N CYS A 97 SHEET 1 E 2 TRP A 119 PHE A 121 0 SHEET 2 E 2 ILE A 127 ASN A 129 -1 O GLN A 128 N LEU A 120 SHEET 1 F 2 VAL A 135 SER A 138 0 SHEET 2 F 2 VAL A 144 LEU A 147 -1 O LEU A 147 N VAL A 135 SHEET 1 G 3 PHE B 46 VAL B 49 0 SHEET 2 G 3 TRP B 81 GLY B 83 -1 O TRP B 81 N VAL B 49 SHEET 3 G 3 ARG B 90 ASN B 91 -1 O ARG B 90 N THR B 82 SHEET 1 H 2 ILE B 51 ASN B 53 0 SHEET 2 H 2 TRP B 157 THR B 159 -1 O TYR B 158 N ARG B 52 SHEET 1 I 2 LEU B 59 SER B 62 0 SHEET 2 I 2 VAL B 68 LEU B 71 -1 O LEU B 71 N LEU B 59 SHEET 1 J 2 CYS B 97 SER B 100 0 SHEET 2 J 2 VAL B 106 LEU B 109 -1 O TYR B 107 N ASP B 99 SHEET 1 K 2 TRP B 119 PHE B 121 0 SHEET 2 K 2 ILE B 127 ASN B 129 -1 O GLN B 128 N LEU B 120 SHEET 1 L 2 VAL B 135 SER B 138 0 SHEET 2 L 2 VAL B 144 LEU B 147 -1 O LEU B 147 N VAL B 135 SSBOND 1 CYS A 97 CYS A 111 1555 1555 2.06 SSBOND 2 CYS B 97 CYS B 111 1555 1555 2.01 LINK N ILE A 51 NA NA A 2 1555 1555 2.84 LINK O LEU A 60 NA NA A 2 1555 1555 2.82 LINK O GLN A 79 NA NA A 2 1555 1555 2.68 LINK N VAL A 89 NA NA A 3 1555 1555 2.89 LINK O LEU A 98 NA NA A 3 1555 1555 2.80 LINK O GLN A 117 NA NA A 3 1555 1555 2.70 LINK N ILE A 127 NA NA A 1 1555 1555 2.88 LINK O LEU A 136 NA NA A 1 1555 1555 2.81 LINK O GLN A 155 NA NA A 1 1555 1555 2.70 LINK N ILE B 51 NA NA B 6 1555 1555 2.85 LINK O LEU B 60 NA NA B 6 1555 1555 2.82 LINK O GLN B 79 NA NA B 6 1555 1555 2.70 LINK N VAL B 89 NA NA B 4 1555 1555 2.86 LINK O LEU B 98 NA NA B 4 1555 1555 2.80 LINK O GLN B 117 NA NA B 4 1555 1555 2.69 LINK N ILE B 127 NA NA B 5 1555 1555 2.85 LINK O LEU B 136 NA NA B 5 1555 1555 2.82 LINK O GLN B 155 NA NA B 5 1555 1555 2.66 SITE 1 AC1 6 TYR A 126 ILE A 127 VAL A 135 LEU A 136 SITE 2 AC1 6 GLN A 155 TRP A 157 SITE 1 AC2 6 THR A 50 ILE A 51 LEU A 59 LEU A 60 SITE 2 AC2 6 GLN A 79 TRP A 81 SITE 1 AC3 5 THR A 88 VAL A 89 CYS A 97 LEU A 98 SITE 2 AC3 5 GLN A 117 SITE 1 AC4 5 THR B 88 VAL B 89 CYS B 97 LEU B 98 SITE 2 AC4 5 GLN B 117 SITE 1 AC5 6 TYR B 126 ILE B 127 VAL B 135 LEU B 136 SITE 2 AC5 6 GLN B 155 TRP B 157 SITE 1 AC6 6 THR B 50 ILE B 51 LEU B 59 LEU B 60 SITE 2 AC6 6 GLN B 79 TRP B 81 CRYST1 47.346 51.633 175.296 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005705 0.00000