HEADER TRANSFERASE 24-MAR-09 3A0R TITLE CRYSTAL STRUCTURE OF HISTIDINE KINASE THKA (TM1359) IN COMPLEX WITH TITLE 2 RESPONSE REGULATOR PROTEIN TRRA (TM1360) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PAS, CATALYTIC DOMAIN, DHP DOMAIN; COMPND 5 SYNONYM: HISTIDINE KINASE THKA; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RESPONSE REGULATOR; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TRRA; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 12 ORGANISM_TAXID: 2336; SOURCE 13 GENE: TM_1360; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS FOUR HELIX BUNDLE, PAS FOLD, KINASE, PHOSPHOPROTEIN, TRANSFERASE, KEYWDS 2 TWO-COMPONENT REGULATORY SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.YAMADA,H.SUGIMOTO,M.KOBAYASHI,A.OHNO,H.NAKAMURA,Y.SHIRO REVDAT 4 10-NOV-21 3A0R 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3A0R 1 VERSN REVDAT 2 17-NOV-09 3A0R 1 JRNL REVDAT 1 20-OCT-09 3A0R 0 JRNL AUTH S.YAMADA,H.SUGIMOTO,M.KOBAYASHI,A.OHNO,H.NAKAMURA,Y.SHIRO JRNL TITL STRUCTURE OF PAS-LINKED HISTIDINE KINASE AND THE RESPONSE JRNL TITL 2 REGULATOR COMPLEX JRNL REF STRUCTURE V. 17 1333 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836334 JRNL DOI 10.1016/J.STR.2009.07.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.YAMADA,S.AKIYAMA,H.SUGIMOTO,H.KUMITA,K.ITO,T.FUJISAWA, REMARK 1 AUTH 2 H.NAKAMURA,Y.SHIRO REMARK 1 TITL THE SIGNALING PATHWAY IN HISTIDINE KINASE AND THE RESPONSE REMARK 1 TITL 2 REGULATOR COMPLEX REVEALED BY X-RAY CRYSTALLOGRAPHY AND REMARK 1 TITL 3 SOLUTION SCATTERING REMARK 1 REF J.MOL.BIOL. V. 362 123 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16890956 REMARK 1 DOI 10.1016/J.JMB.2006.07.012 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.351 REMARK 3 R VALUE (WORKING SET) : 0.350 REMARK 3 FREE R VALUE : 0.371 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.4670 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 136.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 164.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.63000 REMARK 3 B22 (A**2) : 15.63000 REMARK 3 B33 (A**2) : -31.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.862 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.447 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 280.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3767 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5059 ; 1.203 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 6.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;37.216 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;20.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2779 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1833 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2475 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.030 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2326 ; 0.081 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3643 ; 0.149 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1626 ; 0.152 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 0.243 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 519 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0334 12.0644 -39.0148 REMARK 3 T TENSOR REMARK 3 T11: -2.6357 T22: -0.0415 REMARK 3 T33: -1.6147 T12: 0.5066 REMARK 3 T13: 0.2373 T23: 0.1370 REMARK 3 L TENSOR REMARK 3 L11: 25.6439 L22: 10.2492 REMARK 3 L33: 18.8198 L12: 6.6955 REMARK 3 L13: -2.1973 L23: -3.2403 REMARK 3 S TENSOR REMARK 3 S11: 1.3652 S12: 0.5510 S13: 0.8211 REMARK 3 S21: 1.1181 S22: 0.1064 S23: 1.3261 REMARK 3 S31: -2.9661 S32: -0.5021 S33: -1.4716 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 520 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7992 19.1833 -3.2414 REMARK 3 T TENSOR REMARK 3 T11: 0.7645 T22: 0.5957 REMARK 3 T33: -2.2106 T12: 0.5002 REMARK 3 T13: 0.6379 T23: -0.4634 REMARK 3 L TENSOR REMARK 3 L11: 15.6580 L22: 10.9616 REMARK 3 L33: 6.7048 L12: 4.0094 REMARK 3 L13: 4.8397 L23: -2.9117 REMARK 3 S TENSOR REMARK 3 S11: 0.7464 S12: 1.2093 S13: -0.0029 REMARK 3 S21: 1.4170 S22: -1.3247 S23: -1.5637 REMARK 3 S31: -0.8624 S32: 0.9011 S33: 0.5783 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 604 A 755 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6811 3.4361 -19.8241 REMARK 3 T TENSOR REMARK 3 T11: -3.1098 T22: -2.3962 REMARK 3 T33: -1.5748 T12: 0.6339 REMARK 3 T13: 0.0637 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 29.6360 L22: 18.4324 REMARK 3 L33: 47.4399 L12: -1.6866 REMARK 3 L13: 0.2648 L23: 4.1801 REMARK 3 S TENSOR REMARK 3 S11: -0.6345 S12: -0.0381 S13: -1.0938 REMARK 3 S21: -0.9628 S22: 1.2935 S23: -0.0267 REMARK 3 S31: 4.1691 S32: 2.8779 S33: -0.6590 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1151 34.5083 -21.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.6618 T22: -1.2516 REMARK 3 T33: 0.9228 T12: -0.6975 REMARK 3 T13: -0.0407 T23: 0.3729 REMARK 3 L TENSOR REMARK 3 L11: 20.2695 L22: 8.2702 REMARK 3 L33: 29.0333 L12: -1.8293 REMARK 3 L13: 9.6894 L23: 13.1888 REMARK 3 S TENSOR REMARK 3 S11: -1.1984 S12: 1.0300 S13: 2.3364 REMARK 3 S21: 1.5502 S22: -0.9121 S23: 1.0871 REMARK 3 S31: -2.3886 S32: 0.2644 S33: 2.1105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 IN THE INITIAL MODEL BUILDING OF THIS ENTRY (3A0R), REMARK 3 THE HIGH RESOLUTION STRUCTURES OF THE FOLLOWING FOUR STRUCTURAL REMARK 3 PARTS WERE USED AS A STARTING MODEL: REMARK 3 PAS DOMAIN (3A0S), DHP DOMAIN (2C2A), CA DOMAIN (3A0T) OF THKA , REMARK 3 AND RESPONSE REGULATOR TRRA (3A0U). REMARK 3 THESE MODELS WERE FITTED INTO THE 3.8 A RESOLUTION MAP THAT WAS REMARK 3 EXPERIMENTALLY OBTAINED BY MAD PHASING, REMARK 3 AND THEN INDIVIDUAL ATOMS WERE REFINED. REMARK 3 AMONG THESE FOUR STRUCTURAL PARTS IN THE THKA/TRRA COMPLEX, REMARK 3 TRRA SHOWS A VERY WEAK ELECTRON DENSITY. REMARK 3 THE LOOPS BETA1-ALPHA1, BETA2-ALPHA2, ALPHA2-BETA3, ALPHA3-BETA4 REMARK 3 OF TRRA ARE COMPLETELY DISORDERED. REMARK 3 THE ALPHA4 AND STRANDS BETA1, BETA2, BETA3 OF TRRA SHOW AMBIGUOUS REMARK 3 ELECTRON DENSITY. REMARK 3 THE DENSITY FOR THE LOOP ALPHA6-ALPHA7 OF THE DHP DOMAIN IS NOT REMARK 3 WELL-DEFINED. REMARK 3 THE ATOMIC MODEL OF THESE REGIONS IS NOT ACCURATELY MODELED. REMARK 3 THE ATP-LID REGION OF THE CA DOMAIN COULD NOT BE BUILT DUE TO REMARK 3 DISORDER, REMARK 3 BECAUSE IT DOES NOT HAVE STABLE CONFORMATION IN THE ABSENCE OF THE REMARK 3 NUCLEOTIDE. REMARK 4 REMARK 4 3A0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000028666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97890, 1.00551, 1.00855, REMARK 200 0.99240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11189 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36200 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS-PROPANE PH 7.0, 1.8M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.29700 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.25400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.12700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.29700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 264.38100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 264.38100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.29700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.12700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.29700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.25400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.29700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 176.25400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.29700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 264.38100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 88.12700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.29700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 88.12700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 264.38100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.29700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.29700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 176.25400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 407 REMARK 465 LEU A 408 REMARK 465 VAL A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 LEU A 412 REMARK 465 ARG A 413 REMARK 465 ASN A 414 REMARK 465 GLN A 602 REMARK 465 LYS A 710 REMARK 465 THR A 711 REMARK 465 GLN A 712 REMARK 465 GLY A 713 REMARK 465 THR A 714 REMARK 465 GLY A 715 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 721 HG HG A 800 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 416 131.78 73.25 REMARK 500 GLU A 421 -37.01 -18.67 REMARK 500 LEU A 423 61.32 -109.77 REMARK 500 GLU A 424 -131.20 -148.79 REMARK 500 THR A 425 -129.19 -88.67 REMARK 500 SER A 431 -168.97 -78.18 REMARK 500 LYS A 432 12.36 -59.03 REMARK 500 LEU A 446 -31.05 174.06 REMARK 500 ASP A 464 9.76 49.04 REMARK 500 PHE A 465 -84.24 -98.58 REMARK 500 GLU A 466 -105.78 59.77 REMARK 500 LYS A 479 -85.63 66.72 REMARK 500 GLU A 480 128.90 -34.03 REMARK 500 PHE A 486 92.83 85.95 REMARK 500 LEU A 508 -160.72 -74.63 REMARK 500 LEU A 509 65.43 -104.91 REMARK 500 GLU A 510 -72.08 -70.92 REMARK 500 ASP A 518 97.76 -65.68 REMARK 500 THR A 520 -51.22 171.17 REMARK 500 GLU A 521 43.86 -66.23 REMARK 500 LEU A 522 -67.03 -156.86 REMARK 500 LYS A 530 -72.58 -118.54 REMARK 500 ALA A 543 -73.90 -62.53 REMARK 500 GLU A 548 -4.95 -56.87 REMARK 500 MET A 561 33.82 -96.07 REMARK 500 ARG A 562 -38.17 -142.36 REMARK 500 LYS A 564 40.15 -94.44 REMARK 500 LYS A 565 18.18 -152.48 REMARK 500 ASP A 568 100.10 69.60 REMARK 500 PRO A 570 40.56 -49.78 REMARK 500 GLU A 571 -16.22 62.86 REMARK 500 LEU A 573 59.52 -90.43 REMARK 500 LYS A 574 -41.04 -130.01 REMARK 500 THR A 589 -70.87 -53.22 REMARK 500 ILE A 590 7.03 -60.95 REMARK 500 TYR A 597 -8.18 -51.20 REMARK 500 GLU A 600 -150.07 -78.05 REMARK 500 GLU A 623 -65.23 -16.47 REMARK 500 MET A 629 45.93 -83.23 REMARK 500 ASN A 630 78.85 3.13 REMARK 500 ASP A 632 69.91 -68.43 REMARK 500 ARG A 648 -70.25 -37.95 REMARK 500 THR A 649 -31.86 -34.00 REMARK 500 ILE A 651 -8.46 -57.16 REMARK 500 LEU A 655 -72.58 -63.13 REMARK 500 ILE A 656 -64.96 -8.43 REMARK 500 ASN A 657 61.87 -110.99 REMARK 500 ALA A 662 12.45 -65.99 REMARK 500 TYR A 680 -51.83 -13.30 REMARK 500 PRO A 693 -172.64 -66.36 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 657 LEU A 658 131.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 800 DBREF 3A0R A 408 755 UNP Q9X180 Q9X180_THEMA 408 755 DBREF 3A0R B 1 116 UNP Q9X181 Q9X181_THEMA 1 116 SEQADV 3A0R MET A 407 UNP Q9X180 EXPRESSION TAG SEQADV 3A0R MSE B 89 UNP Q9X181 LEU 89 ENGINEERED MUTATION SEQRES 1 A 349 MET LEU VAL GLU HIS LEU ARG ASN PHE SER GLU SER ILE SEQRES 2 A 349 LEU GLU SER LEU GLU THR ALA ILE ILE THR LEU SER LYS SEQRES 3 A 349 ASP GLY ARG ILE THR GLU TRP ASN LYS LYS ALA GLU GLN SEQRES 4 A 349 LEU PHE GLY LEU LYS LYS GLU ASN VAL LEU GLY ARG ARG SEQRES 5 A 349 LEU LYS ASP LEU PRO ASP PHE GLU GLU ILE GLY SER VAL SEQRES 6 A 349 ALA GLU SER VAL PHE GLU ASN LYS GLU PRO VAL PHE LEU SEQRES 7 A 349 ASN PHE TYR LYS PHE GLY GLU ARG TYR PHE ASN ILE ARG SEQRES 8 A 349 PHE SER PRO PHE ARG ASN ALA LYS THR GLN LEU LEU GLU SEQRES 9 A 349 GLY VAL ILE ILE THR ILE ASP ASP VAL THR GLU LEU TYR SEQRES 10 A 349 LYS TYR GLU GLU GLU ARG LYS ARG ARG GLU ARG LEU SER SEQRES 11 A 349 ILE LEU GLY GLU MET THR ALA ARG VAL ALA HIS GLU ILE SEQRES 12 A 349 ARG ASN PRO ILE THR ILE ILE GLY GLY PHE ILE MET ARG SEQRES 13 A 349 MET LYS LYS HIS LEU ASP ASP PRO GLU THR LEU LYS LYS SEQRES 14 A 349 TYR ILE ASN ILE ILE THR ASN GLU LEU SER ARG LEU GLU SEQRES 15 A 349 THR ILE VAL LYS GLU ILE LEU GLU TYR SER LYS GLU ARG SEQRES 16 A 349 GLN VAL LEU GLU PHE THR GLU PHE ASN LEU ASN GLU LEU SEQRES 17 A 349 ILE ARG GLU VAL TYR VAL LEU PHE GLU GLU LYS ILE ARG SEQRES 18 A 349 LYS MET ASN ILE ASP PHE CYS PHE GLU THR ASP ASN GLU SEQRES 19 A 349 ASP LEU ARG VAL GLU ALA ASP ARG THR ARG ILE LYS GLN SEQRES 20 A 349 VAL LEU ILE ASN LEU VAL GLN ASN ALA ILE GLU ALA THR SEQRES 21 A 349 GLY GLU ASN GLY LYS ILE LYS ILE THR SER GLU ASP MET SEQRES 22 A 349 TYR THR LYS VAL ARG VAL SER VAL TRP ASN SER GLY PRO SEQRES 23 A 349 PRO ILE PRO GLU GLU LEU LYS GLU LYS ILE PHE SER PRO SEQRES 24 A 349 PHE PHE THR THR LYS THR GLN GLY THR GLY LEU GLY LEU SEQRES 25 A 349 SER ILE CYS ARG LYS ILE ILE GLU ASP GLU HIS GLY GLY SEQRES 26 A 349 LYS ILE TRP THR GLU ASN ARG GLU ASN GLY VAL VAL PHE SEQRES 27 A 349 ILE PHE GLU ILE PRO LYS THR PRO GLU LYS ARG SEQRES 1 B 116 MSE LYS ARG ILE LEU VAL VAL ASP ASP GLU PRO ASN ILE SEQRES 2 B 116 ARG GLU LEU LEU LYS GLU GLU LEU GLN GLU GLU GLY TYR SEQRES 3 B 116 GLU ILE ASP THR ALA GLU ASN GLY GLU GLU ALA LEU LYS SEQRES 4 B 116 LYS PHE PHE SER GLY ASN TYR ASP LEU VAL ILE LEU ASP SEQRES 5 B 116 ILE GLU MSE PRO GLY ILE SER GLY LEU GLU VAL ALA GLY SEQRES 6 B 116 GLU ILE ARG LYS LYS LYS LYS ASP ALA LYS ILE ILE LEU SEQRES 7 B 116 LEU THR ALA TYR SER HIS TYR ARG SER ASP MSE SER SER SEQRES 8 B 116 TRP ALA ALA ASP GLU TYR VAL VAL LYS SER PHE ASN PHE SEQRES 9 B 116 ASP GLU LEU LYS GLU LYS VAL LYS LYS LEU LEU SER MODRES 3A0R MSE B 1 MET SELENOMETHIONINE MODRES 3A0R MSE B 55 MET SELENOMETHIONINE MODRES 3A0R MSE B 89 MET SELENOMETHIONINE HET MSE B 1 8 HET MSE B 55 8 HET MSE B 89 8 HET HG A 800 1 HETNAM MSE SELENOMETHIONINE HETNAM HG MERCURY (II) ION FORMUL 2 MSE 3(C5 H11 N O2 SE) FORMUL 3 HG HG 2+ HELIX 1 1 LEU A 420 LEU A 423 1 4 HELIX 2 2 ASN A 440 GLY A 448 1 9 HELIX 3 3 LYS A 450 VAL A 454 5 5 HELIX 4 4 ARG A 458 LEU A 462 5 5 HELIX 5 5 PHE A 465 LYS A 479 1 15 HELIX 6 7 THR A 520 MET A 561 1 42 HELIX 7 8 LEU A 573 LYS A 599 1 27 HELIX 8 9 LEU A 611 MET A 629 1 19 HELIX 9 10 ARG A 648 GLY A 667 1 20 HELIX 10 11 GLU A 700 PHE A 703 1 4 HELIX 11 12 GLY A 717 GLU A 726 1 10 HELIX 12 13 GLU B 10 GLY B 25 1 16 HELIX 13 14 ASN B 33 GLY B 44 1 12 HELIX 14 15 SER B 59 LYS B 71 1 13 HELIX 15 16 MSE B 89 TRP B 92 1 4 HELIX 16 17 PHE B 104 LEU B 115 1 12 SHEET 1 A 4 ILE A 436 TRP A 439 0 SHEET 2 A 4 ILE A 427 SER A 431 -1 N THR A 429 O THR A 437 SHEET 3 A 4 LEU A 509 ASP A 517 -1 O ILE A 514 N ILE A 428 SHEET 4 A 4 ASN A 495 ARG A 502 -1 N SER A 499 O ILE A 513 SHEET 1 B 3 VAL A 482 LEU A 484 0 SHEET 2 B 3 GLU A 605 ASN A 610 -1 O PHE A 606 N PHE A 483 SHEET 3 B 3 ARG A 643 ASP A 647 -1 O ALA A 646 N THR A 607 SHEET 1 C 5 ASP A 632 THR A 637 0 SHEET 2 C 5 LYS A 671 ASP A 678 1 O ILE A 674 N CYS A 634 SHEET 3 C 5 LYS A 682 SER A 690 -1 O TRP A 688 N LYS A 673 SHEET 4 C 5 GLY A 741 PRO A 749 -1 O VAL A 742 N ASN A 689 SHEET 5 C 5 LYS A 732 ASN A 737 -1 N TRP A 734 O ILE A 745 SHEET 1 D 5 TYR B 26 ALA B 31 0 SHEET 2 D 5 LYS B 2 VAL B 7 1 N ILE B 4 O GLU B 27 SHEET 3 D 5 LEU B 48 LEU B 51 1 O ILE B 50 N VAL B 7 SHEET 4 D 5 ILE B 76 THR B 80 1 O ILE B 77 N LEU B 51 SHEET 5 D 5 GLU B 96 VAL B 99 1 O GLU B 96 N LEU B 78 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C GLU B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N PRO B 56 1555 1555 1.35 LINK C ASP B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N SER B 90 1555 1555 1.33 CISPEP 1 SER A 416 GLU A 417 0 12.77 CISPEP 2 HIS A 566 LEU A 567 0 -2.12 SITE 1 AC1 1 CYS A 721 CRYST1 110.594 110.594 352.508 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002837 0.00000