data_3A0V # _entry.id 3A0V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3A0V pdb_00003a0v 10.2210/pdb3a0v/pdb RCSB RCSB028670 ? ? WWPDB D_1000028670 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3A0R 'Structure of histidine kinase ThkA (TM1359) in complex with response regulator protein TrrA (TM1360)' unspecified PDB 3A0S 'PAS domain of histidine kinase ThkA (TM1359) (wild type)' unspecified PDB 3A0T 'Catalytic domain of histidine kinase ThkA (TM1359) in complex with ADP and Mg ion' unspecified PDB 3A0U 'Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF' unspecified # _pdbx_database_status.entry_id 3A0V _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-03-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamada, S.' 1 'Sugimoto, H.' 2 'Kobayashi, M.' 3 'Ohno, A.' 4 'Nakamura, H.' 5 'Shiro, Y.' 6 # _citation.id primary _citation.title 'Structure of PAS-linked histidine kinase and the response regulator complex' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 1333 _citation.page_last 1344 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19836334 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.07.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, S.' 1 ? primary 'Sugimoto, H.' 2 ? primary 'Kobayashi, M.' 3 ? primary 'Ohno, A.' 4 ? primary 'Nakamura, H.' 5 ? primary 'Shiro, Y.' 6 ? # _cell.length_a 43.238 _cell.length_b 43.238 _cell.length_c 116.160 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3A0V _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3A0V _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensor protein' 11328.541 1 2.7.13.3 'F486Mse, F489Mse' 'PAS domain' ? 2 non-polymer syn ETHANOL 46.068 4 ? ? ? ? 3 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLN(MSE)YK(MSE)G ERYFNIRFSPFRNAKTQLLEGVIITIDD ; _entity_poly.pdbx_seq_one_letter_code_can ;METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNMYKMGERYFNIRFSPFR NAKTQLLEGVIITIDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 THR n 1 4 ALA n 1 5 ILE n 1 6 ILE n 1 7 THR n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 ASP n 1 12 GLY n 1 13 ARG n 1 14 ILE n 1 15 THR n 1 16 GLU n 1 17 TRP n 1 18 ASN n 1 19 LYS n 1 20 LYS n 1 21 ALA n 1 22 GLU n 1 23 GLN n 1 24 LEU n 1 25 PHE n 1 26 GLY n 1 27 LEU n 1 28 LYS n 1 29 LYS n 1 30 GLU n 1 31 ASN n 1 32 VAL n 1 33 LEU n 1 34 GLY n 1 35 ARG n 1 36 ARG n 1 37 LEU n 1 38 LYS n 1 39 ASP n 1 40 LEU n 1 41 PRO n 1 42 ASP n 1 43 PHE n 1 44 GLU n 1 45 GLU n 1 46 ILE n 1 47 GLY n 1 48 SER n 1 49 VAL n 1 50 ALA n 1 51 GLU n 1 52 SER n 1 53 VAL n 1 54 PHE n 1 55 GLU n 1 56 ASN n 1 57 LYS n 1 58 GLU n 1 59 PRO n 1 60 VAL n 1 61 PHE n 1 62 LEU n 1 63 ASN n 1 64 MSE n 1 65 TYR n 1 66 LYS n 1 67 MSE n 1 68 GLY n 1 69 GLU n 1 70 ARG n 1 71 TYR n 1 72 PHE n 1 73 ASN n 1 74 ILE n 1 75 ARG n 1 76 PHE n 1 77 SER n 1 78 PRO n 1 79 PHE n 1 80 ARG n 1 81 ASN n 1 82 ALA n 1 83 LYS n 1 84 THR n 1 85 GLN n 1 86 LEU n 1 87 LEU n 1 88 GLU n 1 89 GLY n 1 90 VAL n 1 91 ILE n 1 92 ILE n 1 93 THR n 1 94 ILE n 1 95 ASP n 1 96 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_1359 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSETA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X180_THEMA _struct_ref.pdbx_db_accession Q9X180 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRN AKTQLLEGVIITIDD ; _struct_ref.pdbx_align_begin 424 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3A0V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 96 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X180 _struct_ref_seq.db_align_beg 424 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 518 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 424 _struct_ref_seq.pdbx_auth_seq_align_end 518 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3A0V MSE A 1 ? UNP Q9X180 ? ? 'expression tag' 423 1 1 3A0V MSE A 64 ? UNP Q9X180 PHE 486 'engineered mutation' 486 2 1 3A0V MSE A 67 ? UNP Q9X180 PHE 489 'engineered mutation' 489 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3A0V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 48.67 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '40% ethanol, 0.05M phosphate-citrate, 5% PEG1000, pH 6.2, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2005-10-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'DIAMOND 111 DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9797 1.0 3 0.9789 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.pdbx_wavelength_list '0.9795, 0.9797, 0.9789' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL45XU # _reflns.entry_id 3A0V _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 20.0 _reflns.number_all ? _reflns.number_obs 12735 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI 55.5 _reflns.B_iso_Wilson_estimate 26.7 _reflns.pdbx_redundancy 15.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 10.2 _reflns_shell.pdbx_Rsym_value 0.126 _reflns_shell.pdbx_redundancy 13.9 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3A0V _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.200 _refine.ls_number_reflns_obs 12724 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.258 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 619 _refine.B_iso_mean 21.354 _refine.aniso_B[1][1] 0.620 _refine.aniso_B[2][2] 0.620 _refine.aniso_B[3][3] -1.240 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.131 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 52.53 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 791 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 913 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 812 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1082 1.515 1.982 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 95 6.201 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40 33.812 24.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 161 15.089 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 17.069 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 118 0.108 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 597 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 371 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 558 0.314 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 71 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 20 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.167 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 482 1.044 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 779 1.868 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 330 3.268 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 303 4.700 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.780 _refine_ls_shell.number_reflns_R_work 870 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.R_factor_R_free 0.303 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 918 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3A0V _struct.title 'PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3A0V _struct_keywords.text 'PAS-fold, Kinase, Phosphoprotein, Transferase, Two-component regulatory system' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 18 ? GLY A 26 ? ASN A 440 GLY A 448 1 ? 9 HELX_P HELX_P2 2 LYS A 28 ? LEU A 33 ? LYS A 450 LEU A 455 1 ? 6 HELX_P HELX_P3 3 ARG A 36 ? LEU A 40 ? ARG A 458 LEU A 462 5 ? 5 HELX_P HELX_P4 4 PHE A 43 ? LYS A 57 ? PHE A 465 LYS A 479 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 1 C ? ? ? 1_555 A GLU 2 N ? ? A MSE 423 A GLU 424 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A ASN 63 C ? ? ? 1_555 A MSE 64 N ? ? A ASN 485 A MSE 486 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A MSE 64 C ? ? ? 1_555 A TYR 65 N ? ? A MSE 486 A TYR 487 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale4 covale both ? A LYS 66 C ? ? ? 1_555 A MSE 67 N ? ? A LYS 488 A MSE 489 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A MSE 67 C ? ? ? 1_555 A GLY 68 N ? ? A MSE 489 A GLY 490 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 14 ? TRP A 17 ? ILE A 436 TRP A 439 A 2 ALA A 4 ? SER A 9 ? ALA A 426 SER A 431 A 3 LEU A 87 ? ASP A 95 ? LEU A 509 ASP A 517 A 4 ARG A 70 ? ARG A 80 ? ARG A 492 ARG A 502 A 5 VAL A 60 ? MSE A 67 ? VAL A 482 MSE A 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 15 ? O THR A 437 N THR A 7 ? N THR A 429 A 2 3 N ALA A 4 ? N ALA A 426 O ILE A 94 ? O ILE A 516 A 3 4 O ASP A 95 ? O ASP A 517 N ASN A 73 ? N ASN A 495 A 4 5 O PHE A 76 ? O PHE A 498 N VAL A 60 ? N VAL A 482 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EOH 101 ? 4 'BINDING SITE FOR RESIDUE EOH A 101' AC2 Software A EOH 102 ? 3 'BINDING SITE FOR RESIDUE EOH A 102' AC3 Software A EOH 103 ? 5 'BINDING SITE FOR RESIDUE EOH A 103' AC4 Software A EOH 104 ? 1 'BINDING SITE FOR RESIDUE EOH A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH F . ? HOH A 11 . ? 1_555 ? 2 AC1 4 SER A 9 ? SER A 431 . ? 1_555 ? 3 AC1 4 LYS A 10 ? LYS A 432 . ? 1_555 ? 4 AC1 4 GLU A 51 ? GLU A 473 . ? 1_555 ? 5 AC2 3 HOH F . ? HOH A 6 . ? 6_555 ? 6 AC2 3 ASN A 31 ? ASN A 453 . ? 6_555 ? 7 AC2 3 THR A 93 ? THR A 515 . ? 1_555 ? 8 AC3 5 HOH F . ? HOH A 35 . ? 1_555 ? 9 AC3 5 MSE A 64 ? MSE A 486 . ? 1_555 ? 10 AC3 5 PHE A 72 ? PHE A 494 . ? 1_555 ? 11 AC3 5 ASN A 73 ? ASN A 495 . ? 1_555 ? 12 AC3 5 ASP A 96 ? ASP A 518 . ? 1_555 ? 13 AC4 1 PHE A 25 ? PHE A 447 . ? 1_555 ? # _atom_sites.entry_id 3A0V _atom_sites.fract_transf_matrix[1][1] 0.023128 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023128 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008609 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 423 423 MSE MSE A . n A 1 2 GLU 2 424 424 GLU GLU A . n A 1 3 THR 3 425 425 THR THR A . n A 1 4 ALA 4 426 426 ALA ALA A . n A 1 5 ILE 5 427 427 ILE ILE A . n A 1 6 ILE 6 428 428 ILE ILE A . n A 1 7 THR 7 429 429 THR THR A . n A 1 8 LEU 8 430 430 LEU LEU A . n A 1 9 SER 9 431 431 SER SER A . n A 1 10 LYS 10 432 432 LYS LYS A . n A 1 11 ASP 11 433 433 ASP ASP A . n A 1 12 GLY 12 434 434 GLY GLY A . n A 1 13 ARG 13 435 435 ARG ARG A . n A 1 14 ILE 14 436 436 ILE ILE A . n A 1 15 THR 15 437 437 THR THR A . n A 1 16 GLU 16 438 438 GLU GLU A . n A 1 17 TRP 17 439 439 TRP TRP A . n A 1 18 ASN 18 440 440 ASN ASN A . n A 1 19 LYS 19 441 441 LYS LYS A . n A 1 20 LYS 20 442 442 LYS LYS A . n A 1 21 ALA 21 443 443 ALA ALA A . n A 1 22 GLU 22 444 444 GLU GLU A . n A 1 23 GLN 23 445 445 GLN GLN A . n A 1 24 LEU 24 446 446 LEU LEU A . n A 1 25 PHE 25 447 447 PHE PHE A . n A 1 26 GLY 26 448 448 GLY GLY A . n A 1 27 LEU 27 449 449 LEU LEU A . n A 1 28 LYS 28 450 450 LYS LYS A . n A 1 29 LYS 29 451 451 LYS LYS A . n A 1 30 GLU 30 452 452 GLU GLU A . n A 1 31 ASN 31 453 453 ASN ASN A . n A 1 32 VAL 32 454 454 VAL VAL A . n A 1 33 LEU 33 455 455 LEU LEU A . n A 1 34 GLY 34 456 456 GLY GLY A . n A 1 35 ARG 35 457 457 ARG ARG A . n A 1 36 ARG 36 458 458 ARG ARG A . n A 1 37 LEU 37 459 459 LEU LEU A . n A 1 38 LYS 38 460 460 LYS LYS A . n A 1 39 ASP 39 461 461 ASP ASP A . n A 1 40 LEU 40 462 462 LEU LEU A . n A 1 41 PRO 41 463 463 PRO PRO A . n A 1 42 ASP 42 464 464 ASP ASP A . n A 1 43 PHE 43 465 465 PHE PHE A . n A 1 44 GLU 44 466 466 GLU GLU A . n A 1 45 GLU 45 467 467 GLU GLU A . n A 1 46 ILE 46 468 468 ILE ILE A . n A 1 47 GLY 47 469 469 GLY GLY A . n A 1 48 SER 48 470 470 SER SER A . n A 1 49 VAL 49 471 471 VAL VAL A . n A 1 50 ALA 50 472 472 ALA ALA A . n A 1 51 GLU 51 473 473 GLU GLU A . n A 1 52 SER 52 474 474 SER SER A . n A 1 53 VAL 53 475 475 VAL VAL A . n A 1 54 PHE 54 476 476 PHE PHE A . n A 1 55 GLU 55 477 477 GLU GLU A . n A 1 56 ASN 56 478 478 ASN ASN A . n A 1 57 LYS 57 479 479 LYS LYS A . n A 1 58 GLU 58 480 480 GLU GLU A . n A 1 59 PRO 59 481 481 PRO PRO A . n A 1 60 VAL 60 482 482 VAL VAL A . n A 1 61 PHE 61 483 483 PHE PHE A . n A 1 62 LEU 62 484 484 LEU LEU A . n A 1 63 ASN 63 485 485 ASN ASN A . n A 1 64 MSE 64 486 486 MSE MSE A . n A 1 65 TYR 65 487 487 TYR TYR A . n A 1 66 LYS 66 488 488 LYS LYS A . n A 1 67 MSE 67 489 489 MSE MSE A . n A 1 68 GLY 68 490 490 GLY GLY A . n A 1 69 GLU 69 491 491 GLU GLU A . n A 1 70 ARG 70 492 492 ARG ARG A . n A 1 71 TYR 71 493 493 TYR TYR A . n A 1 72 PHE 72 494 494 PHE PHE A . n A 1 73 ASN 73 495 495 ASN ASN A . n A 1 74 ILE 74 496 496 ILE ILE A . n A 1 75 ARG 75 497 497 ARG ARG A . n A 1 76 PHE 76 498 498 PHE PHE A . n A 1 77 SER 77 499 499 SER SER A . n A 1 78 PRO 78 500 500 PRO PRO A . n A 1 79 PHE 79 501 501 PHE PHE A . n A 1 80 ARG 80 502 502 ARG ARG A . n A 1 81 ASN 81 503 503 ASN ASN A . n A 1 82 ALA 82 504 504 ALA ALA A . n A 1 83 LYS 83 505 505 LYS LYS A . n A 1 84 THR 84 506 506 THR THR A . n A 1 85 GLN 85 507 507 GLN GLN A . n A 1 86 LEU 86 508 508 LEU LEU A . n A 1 87 LEU 87 509 509 LEU LEU A . n A 1 88 GLU 88 510 510 GLU GLU A . n A 1 89 GLY 89 511 511 GLY GLY A . n A 1 90 VAL 90 512 512 VAL VAL A . n A 1 91 ILE 91 513 513 ILE ILE A . n A 1 92 ILE 92 514 514 ILE ILE A . n A 1 93 THR 93 515 515 THR THR A . n A 1 94 ILE 94 516 516 ILE ILE A . n A 1 95 ASP 95 517 517 ASP ASP A . n A 1 96 ASP 96 518 518 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EOH 1 101 101 EOH EOH A . C 2 EOH 1 102 102 EOH EOH A . D 2 EOH 1 103 103 EOH EOH A . E 2 EOH 1 104 104 EOH EOH A . F 3 HOH 1 1 1 HOH HOH A . F 3 HOH 2 2 2 HOH HOH A . F 3 HOH 3 3 3 HOH HOH A . F 3 HOH 4 4 4 HOH HOH A . F 3 HOH 5 5 5 HOH HOH A . F 3 HOH 6 6 6 HOH HOH A . F 3 HOH 7 7 7 HOH HOH A . F 3 HOH 8 8 8 HOH HOH A . F 3 HOH 9 9 9 HOH HOH A . F 3 HOH 10 10 10 HOH HOH A . F 3 HOH 11 11 11 HOH HOH A . F 3 HOH 12 12 12 HOH HOH A . F 3 HOH 13 13 13 HOH HOH A . F 3 HOH 14 14 14 HOH HOH A . F 3 HOH 15 15 15 HOH HOH A . F 3 HOH 16 16 16 HOH HOH A . F 3 HOH 17 17 17 HOH HOH A . F 3 HOH 18 18 18 HOH HOH A . F 3 HOH 19 19 19 HOH HOH A . F 3 HOH 20 20 20 HOH HOH A . F 3 HOH 21 21 21 HOH HOH A . F 3 HOH 22 22 22 HOH HOH A . F 3 HOH 23 23 23 HOH HOH A . F 3 HOH 24 24 24 HOH HOH A . F 3 HOH 25 25 25 HOH HOH A . F 3 HOH 26 26 26 HOH HOH A . F 3 HOH 27 27 27 HOH HOH A . F 3 HOH 28 28 28 HOH HOH A . F 3 HOH 29 29 29 HOH HOH A . F 3 HOH 30 30 30 HOH HOH A . F 3 HOH 31 31 31 HOH HOH A . F 3 HOH 32 32 32 HOH HOH A . F 3 HOH 33 33 33 HOH HOH A . F 3 HOH 34 34 34 HOH HOH A . F 3 HOH 35 35 35 HOH HOH A . F 3 HOH 36 36 36 HOH HOH A . F 3 HOH 37 37 37 HOH HOH A . F 3 HOH 38 38 38 HOH HOH A . F 3 HOH 39 39 39 HOH HOH A . F 3 HOH 40 40 40 HOH HOH A . F 3 HOH 41 41 41 HOH HOH A . F 3 HOH 42 42 42 HOH HOH A . F 3 HOH 43 43 43 HOH HOH A . F 3 HOH 44 44 44 HOH HOH A . F 3 HOH 45 45 45 HOH HOH A . F 3 HOH 46 46 46 HOH HOH A . F 3 HOH 47 47 47 HOH HOH A . F 3 HOH 48 48 48 HOH HOH A . F 3 HOH 49 49 49 HOH HOH A . F 3 HOH 50 50 50 HOH HOH A . F 3 HOH 51 51 51 HOH HOH A . F 3 HOH 52 52 52 HOH HOH A . F 3 HOH 53 53 53 HOH HOH A . F 3 HOH 54 54 54 HOH HOH A . F 3 HOH 55 55 55 HOH HOH A . F 3 HOH 56 56 56 HOH HOH A . F 3 HOH 57 57 57 HOH HOH A . F 3 HOH 58 58 58 HOH HOH A . F 3 HOH 59 59 59 HOH HOH A . F 3 HOH 60 60 60 HOH HOH A . F 3 HOH 61 61 61 HOH HOH A . F 3 HOH 62 62 62 HOH HOH A . F 3 HOH 63 63 63 HOH HOH A . F 3 HOH 64 64 64 HOH HOH A . F 3 HOH 65 65 65 HOH HOH A . F 3 HOH 66 66 66 HOH HOH A . F 3 HOH 67 67 67 HOH HOH A . F 3 HOH 68 68 68 HOH HOH A . F 3 HOH 69 69 69 HOH HOH A . F 3 HOH 70 70 70 HOH HOH A . F 3 HOH 71 71 71 HOH HOH A . F 3 HOH 72 72 72 HOH HOH A . F 3 HOH 73 73 73 HOH HOH A . F 3 HOH 74 74 74 HOH HOH A . F 3 HOH 75 75 75 HOH HOH A . F 3 HOH 76 76 76 HOH HOH A . F 3 HOH 77 77 77 HOH HOH A . F 3 HOH 78 78 78 HOH HOH A . F 3 HOH 79 79 79 HOH HOH A . F 3 HOH 80 80 80 HOH HOH A . F 3 HOH 81 81 81 HOH HOH A . F 3 HOH 82 82 82 HOH HOH A . F 3 HOH 83 83 83 HOH HOH A . F 3 HOH 84 84 84 HOH HOH A . F 3 HOH 85 85 85 HOH HOH A . F 3 HOH 86 86 86 HOH HOH A . F 3 HOH 87 87 87 HOH HOH A . F 3 HOH 88 88 88 HOH HOH A . F 3 HOH 89 89 89 HOH HOH A . F 3 HOH 90 90 90 HOH HOH A . F 3 HOH 91 91 91 HOH HOH A . F 3 HOH 92 92 92 HOH HOH A . F 3 HOH 93 93 93 HOH HOH A . F 3 HOH 94 94 94 HOH HOH A . F 3 HOH 95 95 95 HOH HOH A . F 3 HOH 96 96 96 HOH HOH A . F 3 HOH 97 97 97 HOH HOH A . F 3 HOH 98 98 98 HOH HOH A . F 3 HOH 99 99 99 HOH HOH A . F 3 HOH 100 100 100 HOH HOH A . F 3 HOH 101 105 105 HOH HOH A . F 3 HOH 102 106 106 HOH HOH A . F 3 HOH 103 107 107 HOH HOH A . F 3 HOH 104 108 108 HOH HOH A . F 3 HOH 105 109 109 HOH HOH A . F 3 HOH 106 110 110 HOH HOH A . F 3 HOH 107 519 101 HOH HOH A . F 3 HOH 108 520 102 HOH HOH A . F 3 HOH 109 521 103 HOH HOH A . F 3 HOH 110 522 104 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 423 ? MET SELENOMETHIONINE 2 A MSE 64 A MSE 486 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 489 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 3 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH A TYR 487 ? ? O A HOH 45 ? ? 2.16 2 1 O A ASP 433 ? ? NH2 A ARG 458 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 439 ? ? -163.30 99.88 2 1 ASP A 464 ? ? 78.01 -7.22 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ETHANOL EOH 3 water HOH #