HEADER HYDROLASE 31-MAR-09 3A1C TITLE CRYSTAL STRUCTURE OF THE P- AND N-DOMAINS OF COPA, A COPPER- TITLE 2 TRANSPORTING P-TYPE ATPASE, BOUND WITH AMPPCP-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE COPPER-EXPORTING P-TYPE ATPASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 387-673; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: COPA, PACS, AF_0473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS P-TYPE ATPASE, ATP-BINDING, CELL MEMBRANE, COPPER TRANSPORT, KEYWDS 2 HYDROLASE, ION TRANSPORT, MAGNESIUM, MEMBRANE, METAL-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUDA,C.TOYOSHIMA REVDAT 3 01-NOV-23 3A1C 1 REMARK SEQADV REVDAT 2 13-JUL-11 3A1C 1 VERSN REVDAT 1 21-JUL-09 3A1C 0 JRNL AUTH T.TSUDA,C.TOYOSHIMA JRNL TITL NUCLEOTIDE RECOGNITION BY COPA, A CU+-TRANSPORTING P-TYPE JRNL TITL 2 ATPASE. JRNL REF EMBO J. V. 28 1782 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19478797 JRNL DOI 10.1038/EMBOJ.2009.143 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4131 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5593 ; 1.341 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.223 ;25.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;13.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.170 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2956 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1952 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2841 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2765 ; 0.849 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4280 ; 1.388 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 2.256 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 3.739 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 430 REMARK 3 RESIDUE RANGE : A 548 A 666 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8702 23.0280 51.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: -0.0449 REMARK 3 T33: -0.0507 T12: 0.0418 REMARK 3 T13: 0.0660 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.9109 L22: 0.4523 REMARK 3 L33: 1.1229 L12: 0.4464 REMARK 3 L13: -0.6786 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.1178 S13: 0.0398 REMARK 3 S21: 0.0323 S22: -0.0579 S23: -0.0303 REMARK 3 S31: -0.0349 S32: -0.1215 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 430 REMARK 3 RESIDUE RANGE : B 548 B 671 REMARK 3 ORIGIN FOR THE GROUP (A): 74.2489 41.3352 26.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: -0.0592 REMARK 3 T33: -0.0513 T12: -0.0127 REMARK 3 T13: 0.0184 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 0.4519 L22: 1.9543 REMARK 3 L33: 1.2537 L12: -0.2005 REMARK 3 L13: 0.0714 L23: -1.5540 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.0809 S13: 0.0366 REMARK 3 S21: 0.0229 S22: 0.0868 S23: -0.0079 REMARK 3 S31: 0.0433 S32: -0.0422 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 80.7587 5.4150 34.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: -0.1203 REMARK 3 T33: -0.0081 T12: 0.0158 REMARK 3 T13: 0.0790 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.6082 L22: 2.3493 REMARK 3 L33: 0.8945 L12: -0.3416 REMARK 3 L13: 0.5299 L23: -0.4480 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.1992 S13: -0.0843 REMARK 3 S21: -0.0023 S22: -0.0392 S23: -0.1118 REMARK 3 S31: -0.0320 S32: 0.0863 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 546 REMARK 3 ORIGIN FOR THE GROUP (A): 100.9534 32.6206 36.8823 REMARK 3 T TENSOR REMARK 3 T11: -0.2245 T22: -0.0093 REMARK 3 T33: 0.3421 T12: -0.0277 REMARK 3 T13: -0.0053 T23: 0.1546 REMARK 3 L TENSOR REMARK 3 L11: 3.4774 L22: 3.3736 REMARK 3 L33: 3.3315 L12: 0.6662 REMARK 3 L13: -0.2129 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: 0.2118 S13: -0.2046 REMARK 3 S21: 0.2598 S22: -0.0986 S23: -1.1856 REMARK 3 S31: -0.0649 S32: 0.4431 S33: 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000028687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 1.5M NACL, 0.1M MES, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.89400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.84100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.94700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.89400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.94700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.84100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT A FUNCTINAL UNIT IS UNKNOWN ABOUT REMARK 300 THIS PROTEIN AND WOULD LIKE TO CHANGE DIMERIC TO UNKNOWN IN REMARK REMARK 300 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 SER A 396 REMARK 465 ARG A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 667 REMARK 465 THR A 668 REMARK 465 MET A 669 REMARK 465 SER A 670 REMARK 465 LYS A 671 REMARK 465 ILE A 672 REMARK 465 LYS A 673 REMARK 465 MET B 387 REMARK 465 GLY B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 GLY B 395 REMARK 465 SER B 396 REMARK 465 ARG B 397 REMARK 465 LYS B 398 REMARK 465 GLY B 399 REMARK 465 LYS B 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1428 O HOH B 1435 1.94 REMARK 500 O HOH B 1211 O HOH B 1419 2.10 REMARK 500 O HOH A 1216 O HOH B 1211 2.12 REMARK 500 O HOH A 1133 O HOH A 1153 2.17 REMARK 500 OE1 GLU A 474 O HOH A 1091 2.17 REMARK 500 O HOH A 1194 O HOH A 1205 2.17 REMARK 500 O HOH B 1360 O HOH B 1368 2.18 REMARK 500 O HOH B 1326 O HOH B 1328 2.18 REMARK 500 O HOH B 1304 O HOH B 1305 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 526 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 526 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 491 -57.91 -128.21 REMARK 500 HIS A 598 22.79 49.04 REMARK 500 THR B 428 -44.59 -159.79 REMARK 500 GLU B 481 136.96 -35.52 REMARK 500 PRO B 482 111.78 -37.42 REMARK 500 GLU B 491 -59.11 -132.97 REMARK 500 ASP B 496 93.09 -64.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A 997 O1G REMARK 620 2 ACP A 997 O2B 82.6 REMARK 620 3 HOH A1003 O 147.8 97.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 997 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A1D RELATED DB: PDB REMARK 900 ADP-MG BOUND FORM REMARK 900 RELATED ID: 3A1E RELATED DB: PDB REMARK 900 HIS462GLN MUTANT REMARK 900 RELATED ID: 2B8E RELATED DB: PDB REMARK 900 NUCLEOTIDE UNBOUND FORM REMARK 900 RELATED ID: 2IYE RELATED DB: PDB REMARK 900 SO4 BOUND FORM REMARK 900 RELATED ID: 2ARF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE N-DOMAIN OF ATP7B DBREF 3A1C A 398 673 UNP O29777 COPA_ARCFU 398 673 DBREF 3A1C B 398 673 UNP O29777 COPA_ARCFU 398 673 SEQADV 3A1C MET A 387 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY A 388 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 389 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 390 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 391 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 392 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 393 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 394 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY A 395 UNP O29777 EXPRESSION TAG SEQADV 3A1C SER A 396 UNP O29777 EXPRESSION TAG SEQADV 3A1C ARG A 397 UNP O29777 EXPRESSION TAG SEQADV 3A1C MET B 387 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY B 388 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 389 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 390 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 391 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 392 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 393 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 394 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY B 395 UNP O29777 EXPRESSION TAG SEQADV 3A1C SER B 396 UNP O29777 EXPRESSION TAG SEQADV 3A1C ARG B 397 UNP O29777 EXPRESSION TAG SEQRES 1 A 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 A 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 A 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 A 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 A 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 A 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 A 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 A 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 A 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 A 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 A 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 A 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 A 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 A 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 A 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 A 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 A 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 A 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 A 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 A 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 A 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 A 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 A 287 LYS SEQRES 1 B 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 B 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 B 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 B 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 B 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 B 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 B 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 B 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 B 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 B 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 B 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 B 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 B 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 B 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 B 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 B 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 B 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 B 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 B 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 B 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 B 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 B 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 B 287 LYS HET ACP A 997 31 HET MG A 998 1 HET ACP B 997 31 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG MG 2+ FORMUL 6 HOH *473(H2 O) HELIX 1 1 ASP A 410 VAL A 418 1 9 HELIX 2 2 ASP A 445 GLU A 457 1 13 HELIX 3 3 HIS A 462 HIS A 475 1 14 HELIX 4 4 ASN A 502 PHE A 509 1 8 HELIX 5 5 SER A 514 GLU A 527 1 14 HELIX 6 6 SER A 553 MET A 564 1 12 HELIX 7 7 ASN A 575 ASN A 587 1 13 HELIX 8 8 GLN A 599 GLN A 608 1 10 HELIX 9 9 ASP A 622 ALA A 629 1 8 HELIX 10 10 LEU A 655 LEU A 664 1 10 HELIX 11 11 ASP B 410 VAL B 418 1 9 HELIX 12 12 LYS B 425 LEU B 429 1 5 HELIX 13 13 ASP B 445 ARG B 458 1 14 HELIX 14 14 HIS B 462 HIS B 475 1 14 HELIX 15 15 ASN B 502 PHE B 509 1 8 HELIX 16 16 SER B 514 ARG B 526 1 13 HELIX 17 17 SER B 553 MET B 564 1 12 HELIX 18 18 ASN B 575 ASN B 587 1 13 HELIX 19 19 GLN B 599 GLN B 608 1 10 HELIX 20 20 ASP B 622 ALA B 629 1 8 HELIX 21 21 LEU B 655 SER B 670 1 16 SHEET 1 A 7 ILE A 404 ILE A 406 0 SHEET 2 A 7 ILE A 648 LEU A 650 -1 O VAL A 649 N LEU A 405 SHEET 3 A 7 LEU A 631 VAL A 635 1 N ALA A 634 O LEU A 650 SHEET 4 A 7 VAL A 613 GLY A 617 1 N PHE A 615 O ILE A 633 SHEET 5 A 7 ALA A 420 ASP A 424 1 N ASP A 424 O VAL A 616 SHEET 6 A 7 LYS A 567 ILE A 571 1 O LYS A 567 N VAL A 421 SHEET 7 A 7 LEU A 590 ILE A 592 1 O ILE A 592 N MET A 570 SHEET 1 B 6 GLU A 435 PRO A 441 0 SHEET 2 B 6 ARG A 539 SER A 547 -1 O ILE A 543 N VAL A 440 SHEET 3 B 6 THR A 530 ARG A 536 -1 N VAL A 534 O GLU A 541 SHEET 4 B 6 ILE A 498 GLY A 501 -1 N GLY A 501 O ILE A 533 SHEET 5 B 6 GLY A 492 ALA A 495 -1 N ALA A 495 O ILE A 498 SHEET 6 B 6 VAL A 485 ILE A 488 -1 N ILE A 488 O GLY A 492 SHEET 1 C 7 ILE B 404 ILE B 406 0 SHEET 2 C 7 ILE B 648 LEU B 650 -1 O VAL B 649 N LEU B 405 SHEET 3 C 7 LEU B 631 VAL B 635 1 N ALA B 634 O LEU B 650 SHEET 4 C 7 VAL B 613 GLY B 617 1 N PHE B 615 O ILE B 633 SHEET 5 C 7 ALA B 420 ASP B 424 1 N ILE B 422 O VAL B 616 SHEET 6 C 7 LYS B 567 ILE B 571 1 O LYS B 567 N VAL B 421 SHEET 7 C 7 LEU B 590 ILE B 592 1 O ILE B 592 N MET B 570 SHEET 1 D 6 GLU B 435 PRO B 441 0 SHEET 2 D 6 ARG B 539 SER B 547 -1 O ILE B 543 N VAL B 440 SHEET 3 D 6 THR B 530 ARG B 536 -1 N VAL B 534 O GLU B 541 SHEET 4 D 6 ILE B 498 GLY B 501 -1 N GLY B 501 O ILE B 533 SHEET 5 D 6 GLY B 492 ALA B 495 -1 N ALA B 495 O ILE B 498 SHEET 6 D 6 GLU B 486 ILE B 488 -1 N ILE B 488 O GLY B 492 LINK O1G ACP A 997 MG MG A 998 1555 1555 1.97 LINK O2B ACP A 997 MG MG A 998 1555 1555 2.49 LINK MG MG A 998 O HOH A1003 1555 1555 2.42 SITE 1 AC1 24 ASP A 424 LYS A 425 THR A 426 GLU A 457 SITE 2 AC1 24 HIS A 462 ILE A 464 GLY A 490 GLU A 491 SITE 3 AC1 24 GLY A 492 VAL A 500 GLY A 501 ASN A 502 SITE 4 AC1 24 VAL A 532 THR A 572 GLY A 573 ASP A 574 SITE 5 AC1 24 LYS A 600 MG A 998 HOH A1001 HOH A1156 SITE 6 AC1 24 HOH A1173 HOH A1190 HOH A1196 HOH A1199 SITE 1 AC2 6 ASP A 424 LYS A 600 ACP A 997 HOH A1001 SITE 2 AC2 6 HOH A1002 HOH A1003 SITE 1 AC3 23 ASP B 424 LYS B 425 THR B 426 GLU B 457 SITE 2 AC3 23 SER B 460 HIS B 462 ILE B 464 GLY B 490 SITE 3 AC3 23 GLU B 491 VAL B 493 VAL B 500 GLY B 501 SITE 4 AC3 23 ASN B 502 THR B 572 GLY B 573 ASP B 574 SITE 5 AC3 23 LYS B 600 HOH B1454 HOH B1471 HOH B1480 SITE 6 AC3 23 HOH B1483 HOH B1486 HOH B1504 CRYST1 90.787 90.787 191.788 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005214 0.00000