HEADER HYDROLASE 31-MAR-09 3A1D TITLE CRYSTAL STRUCTURE OF THE P- AND N-DOMAINS OF COPA, A COPPER- TITLE 2 TRANSPORTING P-TYPE ATPASE, BOUND WITH ADP-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE COPPER-EXPORTING P-TYPE ATPASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 387-673; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: COPA, PACS, AF_0473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASIMD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS P-TYPE ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUDA,C.TOYOSHIMA REVDAT 3 01-NOV-23 3A1D 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3A1D 1 VERSN REVDAT 1 21-JUL-09 3A1D 0 JRNL AUTH T.TSUDA,C.TOYOSHIMA JRNL TITL NUCLEOTIDE RECOGNITION BY COPA, A CU+-TRANSPORTING P-TYPE JRNL TITL 2 ATPASE. JRNL REF EMBO J. V. 28 1782 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19478797 JRNL DOI 10.1038/EMBOJ.2009.143 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3413 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4119 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5573 ; 1.285 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.560 ;25.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;12.735 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2956 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2075 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2874 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 530 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.257 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2760 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4276 ; 1.312 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 2.174 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1297 ; 3.610 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 430 REMARK 3 RESIDUE RANGE : A 548 A 666 REMARK 3 ORIGIN FOR THE GROUP (A): 65.5896 22.5467 51.3247 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: -0.0562 REMARK 3 T33: -0.0401 T12: 0.0369 REMARK 3 T13: 0.0526 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.9546 L22: 0.2958 REMARK 3 L33: 1.1660 L12: 0.2532 REMARK 3 L13: -0.5376 L23: 0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: 0.0473 S13: 0.0084 REMARK 3 S21: -0.0319 S22: -0.0548 S23: -0.0617 REMARK 3 S31: -0.0958 S32: -0.1531 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 430 REMARK 3 RESIDUE RANGE : B 548 B 671 REMARK 3 ORIGIN FOR THE GROUP (A): 74.2166 40.9671 25.9879 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: -0.0841 REMARK 3 T33: -0.0416 T12: -0.0038 REMARK 3 T13: 0.0160 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.3117 L22: 1.9807 REMARK 3 L33: 1.0047 L12: -0.1768 REMARK 3 L13: 0.1081 L23: -1.4100 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: 0.0598 S13: 0.0250 REMARK 3 S21: 0.0247 S22: 0.0431 S23: -0.0158 REMARK 3 S31: 0.0382 S32: -0.0124 S33: 0.0768 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 80.5847 5.2561 33.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: -0.1256 REMARK 3 T33: 0.0427 T12: 0.0144 REMARK 3 T13: 0.0820 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2744 L22: 2.8176 REMARK 3 L33: 0.6658 L12: 0.0368 REMARK 3 L13: 0.2704 L23: -0.4696 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: 0.0952 S13: -0.1329 REMARK 3 S21: -0.1249 S22: -0.0472 S23: -0.1477 REMARK 3 S31: 0.0024 S32: 0.0040 S33: -0.0382 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 546 REMARK 3 ORIGIN FOR THE GROUP (A): 100.8389 32.3900 36.6585 REMARK 3 T TENSOR REMARK 3 T11: -0.1861 T22: -0.0671 REMARK 3 T33: 0.3585 T12: -0.0248 REMARK 3 T13: -0.0273 T23: 0.1049 REMARK 3 L TENSOR REMARK 3 L11: 3.7927 L22: 3.5074 REMARK 3 L33: 2.9653 L12: 0.4382 REMARK 3 L13: -0.2050 L23: 0.2068 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: 0.2164 S13: -0.0398 REMARK 3 S21: 0.3325 S22: -0.0066 S23: -1.2181 REMARK 3 S31: -0.0788 S32: 0.3968 S33: 0.1148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000028688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.18750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.78125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.59375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.18750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.59375 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 142.78125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT A FUNCTINAL UNIT IS UNKNOWN ABOUT REMARK 300 THIS PROTEIN AND WOULD LIKE TO CHANGE DIMERIC TO UNKNOWN IN REMARK REMARK 300 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1077 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 SER A 396 REMARK 465 ARG A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 THR A 668 REMARK 465 MET A 669 REMARK 465 SER A 670 REMARK 465 LYS A 671 REMARK 465 ILE A 672 REMARK 465 LYS A 673 REMARK 465 MET B 387 REMARK 465 GLY B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 GLY B 395 REMARK 465 SER B 396 REMARK 465 ARG B 397 REMARK 465 LYS B 398 REMARK 465 LYS B 671 REMARK 465 ILE B 672 REMARK 465 LYS B 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 998 O HOH A 1002 1.70 REMARK 500 MG MG A 998 O HOH A 1001 1.70 REMARK 500 O HOH A 1204 O HOH A 1222 1.73 REMARK 500 O HOH B 1359 O HOH B 1361 1.84 REMARK 500 O THR A 426 O HOH A 1106 1.87 REMARK 500 O ASP A 618 OD1 ASP A 622 1.95 REMARK 500 O HOH B 1537 O HOH B 1540 2.15 REMARK 500 OD2 ASP B 424 O HOH B 1440 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 447 NE ARG B 447 CZ 0.088 REMARK 500 ARG B 447 CZ ARG B 447 NH1 0.200 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 526 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 447 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 447 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 491 -60.39 -127.35 REMARK 500 THR B 428 -30.04 -148.37 REMARK 500 GLU B 491 -56.54 -131.43 REMARK 500 ASP B 496 95.88 -54.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 997 O3B REMARK 620 2 ADP A 997 O1A 83.9 REMARK 620 3 HOH A1003 O 171.3 90.8 REMARK 620 4 HOH A1004 O 90.9 174.8 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 997 O3B REMARK 620 2 ADP B 997 O1A 85.6 REMARK 620 3 HOH B1306 O 166.4 94.2 REMARK 620 4 HOH B1509 O 84.1 90.9 82.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8E RELATED DB: PDB REMARK 900 NUCLEOTIDE UNBOUND FORM REMARK 900 RELATED ID: 2IYE RELATED DB: PDB REMARK 900 SO4 BOUND FORM REMARK 900 RELATED ID: 2ARF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE N-DOMAIN OF ATP7B REMARK 900 RELATED ID: 3A1C RELATED DB: PDB REMARK 900 AMPPCP-MG BOUND FORM REMARK 900 RELATED ID: 3A1E RELATED DB: PDB REMARK 900 HIS462GLN MUTANT DBREF 3A1D A 398 673 UNP O29777 COPA_ARCFU 398 673 DBREF 3A1D B 398 673 UNP O29777 COPA_ARCFU 398 673 SEQADV 3A1D MET A 387 UNP O29777 EXPRESSION TAG SEQADV 3A1D GLY A 388 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 389 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 390 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 391 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 392 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 393 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS A 394 UNP O29777 EXPRESSION TAG SEQADV 3A1D GLY A 395 UNP O29777 EXPRESSION TAG SEQADV 3A1D SER A 396 UNP O29777 EXPRESSION TAG SEQADV 3A1D ARG A 397 UNP O29777 EXPRESSION TAG SEQADV 3A1D MET B 387 UNP O29777 EXPRESSION TAG SEQADV 3A1D GLY B 388 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 389 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 390 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 391 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 392 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 393 UNP O29777 EXPRESSION TAG SEQADV 3A1D HIS B 394 UNP O29777 EXPRESSION TAG SEQADV 3A1D GLY B 395 UNP O29777 EXPRESSION TAG SEQADV 3A1D SER B 396 UNP O29777 EXPRESSION TAG SEQADV 3A1D ARG B 397 UNP O29777 EXPRESSION TAG SEQRES 1 A 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 A 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 A 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 A 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 A 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 A 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 A 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 A 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 A 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 A 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 A 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 A 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 A 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 A 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 A 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 A 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 A 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 A 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 A 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 A 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 A 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 A 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 A 287 LYS SEQRES 1 B 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 B 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 B 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 B 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 B 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 B 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 B 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 B 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 B 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 B 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 B 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 B 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 B 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 B 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 B 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 B 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 B 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 B 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 B 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 B 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 B 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 B 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 B 287 LYS HET ADP A 997 27 HET MG A 998 1 HET ADP B 997 27 HET MG B 998 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *555(H2 O) HELIX 1 1 ASP A 410 VAL A 418 1 9 HELIX 2 2 ASP A 445 GLU A 457 1 13 HELIX 3 3 HIS A 462 HIS A 475 1 14 HELIX 4 4 ASN A 502 PHE A 509 1 8 HELIX 5 5 SER A 514 ARG A 526 1 13 HELIX 6 6 SER A 553 MET A 564 1 12 HELIX 7 7 ASN A 575 ASN A 587 1 13 HELIX 8 8 LEU A 596 HIS A 598 5 3 HELIX 9 9 GLN A 599 ALA A 609 1 11 HELIX 10 10 ASP A 622 ALA A 629 1 8 HELIX 11 11 LEU A 655 LEU A 664 1 10 HELIX 12 12 ASP B 410 VAL B 418 1 9 HELIX 13 13 LYS B 425 LEU B 429 1 5 HELIX 14 14 ASP B 445 ARG B 458 1 14 HELIX 15 15 HIS B 462 HIS B 475 1 14 HELIX 16 16 ASN B 502 PHE B 509 1 8 HELIX 17 17 SER B 514 GLU B 527 1 14 HELIX 18 18 SER B 553 MET B 564 1 12 HELIX 19 19 ASN B 575 ASN B 587 1 13 HELIX 20 20 GLN B 599 GLN B 608 1 10 HELIX 21 21 ASP B 622 ALA B 629 1 8 HELIX 22 22 LEU B 655 SER B 670 1 16 SHEET 1 A 7 ILE A 404 ILE A 406 0 SHEET 2 A 7 ILE A 648 LEU A 650 -1 O VAL A 649 N LEU A 405 SHEET 3 A 7 LEU A 631 ALA A 634 1 N ALA A 634 O LEU A 650 SHEET 4 A 7 VAL A 613 GLY A 617 1 N PHE A 615 O ILE A 633 SHEET 5 A 7 ALA A 420 ASP A 424 1 N ILE A 422 O ALA A 614 SHEET 6 A 7 LYS A 567 ILE A 571 1 O LYS A 567 N VAL A 421 SHEET 7 A 7 LEU A 590 ILE A 592 1 O ILE A 592 N MET A 570 SHEET 1 B 6 GLU A 435 PRO A 441 0 SHEET 2 B 6 ARG A 539 SER A 547 -1 O ILE A 543 N VAL A 440 SHEET 3 B 6 THR A 530 ARG A 536 -1 N VAL A 534 O GLU A 541 SHEET 4 B 6 ILE A 498 GLY A 501 -1 N GLY A 501 O ILE A 533 SHEET 5 B 6 GLY A 492 ALA A 495 -1 N ALA A 495 O ILE A 498 SHEET 6 B 6 VAL A 485 ILE A 488 -1 N ILE A 488 O GLY A 492 SHEET 1 C 7 ILE B 404 ILE B 406 0 SHEET 2 C 7 ILE B 648 LEU B 650 -1 O VAL B 649 N LEU B 405 SHEET 3 C 7 LEU B 631 VAL B 635 1 N ALA B 634 O LEU B 650 SHEET 4 C 7 VAL B 613 GLY B 617 1 N PHE B 615 O ILE B 633 SHEET 5 C 7 ALA B 420 ASP B 424 1 N ASP B 424 O VAL B 616 SHEET 6 C 7 LYS B 567 ILE B 571 1 O LYS B 567 N VAL B 421 SHEET 7 C 7 LEU B 590 ILE B 592 1 O ILE B 592 N MET B 570 SHEET 1 D 6 GLU B 435 PRO B 441 0 SHEET 2 D 6 ARG B 539 SER B 547 -1 O ILE B 543 N VAL B 440 SHEET 3 D 6 THR B 530 ARG B 536 -1 N THR B 530 O VAL B 546 SHEET 4 D 6 ILE B 498 GLY B 501 -1 N GLY B 501 O ILE B 533 SHEET 5 D 6 GLY B 492 ALA B 495 -1 N ALA B 495 O ILE B 498 SHEET 6 D 6 GLU B 486 ILE B 488 -1 N ILE B 488 O GLY B 492 LINK O3B ADP A 997 MG MG A 998 1555 1555 2.01 LINK O1A ADP A 997 MG MG A 998 1555 1555 2.17 LINK MG MG A 998 O HOH A1003 1555 1555 2.18 LINK MG MG A 998 O HOH A1004 1555 1555 2.26 LINK O3B ADP B 997 MG MG B 998 1555 1555 2.14 LINK O1A ADP B 997 MG MG B 998 1555 1555 2.16 LINK MG MG B 998 O HOH B1306 1555 1555 2.21 LINK MG MG B 998 O HOH B1509 1555 1555 1.87 SITE 1 AC1 32 THR A 426 GLU A 457 SER A 460 HIS A 462 SITE 2 AC1 32 ILE A 464 GLY A 490 GLU A 491 GLY A 492 SITE 3 AC1 32 VAL A 493 VAL A 500 GLY A 501 ASN A 502 SITE 4 AC1 32 THR A 572 GLY A 573 ASP A 574 PRO A 597 SITE 5 AC1 32 LYS A 600 MG A 998 HOH A1001 HOH A1002 SITE 6 AC1 32 HOH A1003 HOH A1004 HOH A1146 HOH A1150 SITE 7 AC1 32 HOH A1155 HOH A1160 HOH A1181 HOH A1202 SITE 8 AC1 32 HOH A1206 HOH A1216 HOH A1223 HOH A1224 SITE 1 AC2 5 ADP A 997 HOH A1001 HOH A1002 HOH A1003 SITE 2 AC2 5 HOH A1004 SITE 1 AC3 29 THR B 426 GLU B 457 SER B 460 HIS B 462 SITE 2 AC3 29 ILE B 464 GLY B 490 GLU B 491 GLY B 492 SITE 3 AC3 29 VAL B 493 VAL B 500 GLY B 501 ASN B 502 SITE 4 AC3 29 THR B 572 GLY B 573 ASP B 574 MG B 998 SITE 5 AC3 29 HOH B1304 HOH B1305 HOH B1480 HOH B1481 SITE 6 AC3 29 HOH B1482 HOH B1505 HOH B1508 HOH B1509 SITE 7 AC3 29 HOH B1516 HOH B1519 HOH B1524 HOH B1532 SITE 8 AC3 29 HOH B1545 SITE 1 AC4 5 HIS B 462 ADP B 997 HOH B1305 HOH B1306 SITE 2 AC4 5 HOH B1509 CRYST1 89.956 89.956 190.375 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005253 0.00000